EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000039400 (Gene tree)
Gene ID: 393538
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4570 bases
Position: chr13:28690355-28694924
Accession: ZDB-GENE-040426-1495
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000112094	RNA_pol_A_bac	PF01000.26	2.8e-29	1	1
ENSDARP00000114654	RNA_pol_A_bac	PF01000.26	2e-12	1	1
ENSDARP00000112094	RNA_pol_L	PF01193.24	5.3e-23	1	1
ENSDARP00000114654	RNA_pol_L	PF01193.24	3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000137475	-	843	-	ENSDARP00000114654	197 (aa)	-	A2ATX2
ENSDART00000128246	-	1323	-	ENSDARP00000112094	362 (aa)	-	A2ATX1

Gene Model

Click here to download ENSDARG00000039400's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG
dre04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000039400's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000039400	polr1c	96	71.470	ENSG00000171453	POLR1C	99	76.423	Homo_sapiens
ENSDARG00000039400	polr1c	96	80.342	ENSAPOG00000024356	polr1c	100	81.197	Acanthochromis_polyacanthus
ENSDARG00000039400	polr1c	96	71.839	ENSAMEG00000012205	POLR1C	99	71.839	Ailuropoda_melanoleuca
ENSDARG00000039400	polr1c	90	68.902	ENSACIG00000016268	polr1c	90	69.817	Amphilophus_citrinellus
ENSDARG00000039400	polr1c	99	76.796	ENSAOCG00000011687	polr1c	100	77.624	Amphiprion_ocellaris
ENSDARG00000039400	polr1c	96	79.487	ENSAPEG00000002433	polr1c	100	80.342	Amphiprion_percula
ENSDARG00000039400	polr1c	95	81.375	ENSATEG00000005985	polr1c	99	81.662	Anabas_testudineus
ENSDARG00000039400	polr1c	83	71.333	ENSAPLG00000002908	POLR1C	100	71.333	Anas_platyrhynchos
ENSDARG00000039400	polr1c	93	72.131	ENSACAG00000009764	POLR1C	89	72.669	Anolis_carolinensis
ENSDARG00000039400	polr1c	97	70.940	ENSANAG00000025805	POLR1C	100	70.940	Aotus_nancymaae
ENSDARG00000039400	polr1c	52	31.606	ENSACLG00000004854	polr2c	77	31.606	Astatotilapia_calliptera
ENSDARG00000039400	polr1c	96	80.627	ENSACLG00000006573	polr1c	100	81.481	Astatotilapia_calliptera
ENSDARG00000039400	polr1c	96	87.896	ENSAMXG00000012062	polr1c	99	87.896	Astyanax_mexicanus
ENSDARG00000039400	polr1c	96	71.758	ENSBTAG00000018969	POLR1C	100	71.758	Bos_taurus
ENSDARG00000039400	polr1c	97	45.257	WBGene00019275	rpac-40	99	45.257	Caenorhabditis_elegans
ENSDARG00000039400	polr1c	96	71.182	ENSCJAG00000005594	POLR1C	100	71.182	Callithrix_jacchus
ENSDARG00000039400	polr1c	96	71.758	ENSCAFG00000001872	POLR1C	100	71.758	Canis_familiaris
ENSDARG00000039400	polr1c	96	71.758	ENSCAFG00020012018	POLR1C	100	71.758	Canis_lupus_dingo
ENSDARG00000039400	polr1c	56	31.068	ENSCAFG00020007660	POLR2C	58	31.068	Canis_lupus_dingo
ENSDARG00000039400	polr1c	96	71.552	ENSCHIG00000004352	POLR1C	100	71.552	Capra_hircus
ENSDARG00000039400	polr1c	96	71.552	ENSTSYG00000011921	POLR1C	100	71.470	Carlito_syrichta
ENSDARG00000039400	polr1c	83	73.244	ENSCAPG00000015364	POLR1C	88	73.244	Cavia_aperea
ENSDARG00000039400	polr1c	96	72.046	ENSCPOG00000038098	POLR1C	100	72.046	Cavia_porcellus
ENSDARG00000039400	polr1c	98	70.822	ENSCCAG00000020169	POLR1C	100	71.758	Cebus_capucinus
ENSDARG00000039400	polr1c	97	71.225	ENSCATG00000044045	POLR1C	100	71.470	Cercocebus_atys
ENSDARG00000039400	polr1c	96	72.334	ENSCLAG00000009266	POLR1C	100	72.334	Chinchilla_lanigera
ENSDARG00000039400	polr1c	56	31.068	ENSCLAG00000013676	POLR2C	51	31.068	Chinchilla_lanigera
ENSDARG00000039400	polr1c	96	70.605	ENSCSAG00000011913	POLR1C	100	70.605	Chlorocebus_sabaeus
ENSDARG00000039400	polr1c	59	68.868	ENSCHOG00000006601	POLR1C	100	68.868	Choloepus_hoffmanni
ENSDARG00000039400	polr1c	95	74.493	ENSCPBG00000025203	POLR1C	99	74.493	Chrysemys_picta_bellii
ENSDARG00000039400	polr1c	95	56.686	ENSCING00000003563	-	99	56.686	Ciona_intestinalis
ENSDARG00000039400	polr1c	97	70.940	ENSCANG00000043167	POLR1C	100	71.182	Colobus_angolensis_palliatus
ENSDARG00000039400	polr1c	96	71.182	ENSCGRG00001017533	Polr1c	100	71.182	Cricetulus_griseus_chok1gshd
ENSDARG00000039400	polr1c	83	71.906	ENSCGRG00000013225	Polr1c	100	71.906	Cricetulus_griseus_crigri
ENSDARG00000039400	polr1c	96	81.268	ENSCSEG00000018097	polr1c	100	81.268	Cynoglossus_semilaevis
ENSDARG00000039400	polr1c	65	71.212	ENSCVAG00000009585	polr1c	87	71.212	Cyprinodon_variegatus
ENSDARG00000039400	polr1c	59	82.547	ENSCVAG00000005684	polr1c	88	80.455	Cyprinodon_variegatus
ENSDARG00000039400	polr1c	60	30.837	ENSCVAG00000017931	polr2c	87	30.837	Cyprinodon_variegatus
ENSDARG00000039400	polr1c	96	71.758	ENSDNOG00000042693	POLR1C	100	71.758	Dasypus_novemcinctus
ENSDARG00000039400	polr1c	96	71.470	ENSDORG00000000429	Polr1c	100	71.470	Dipodomys_ordii
ENSDARG00000039400	polr1c	86	54.140	FBgn0031657	CG3756	93	54.140	Drosophila_melanogaster
ENSDARG00000039400	polr1c	96	69.075	ENSETEG00000010807	POLR1C	99	69.075	Echinops_telfairi
ENSDARG00000039400	polr1c	93	68.639	ENSEBUG00000013725	polr1c	97	68.639	Eptatretus_burgeri
ENSDARG00000039400	polr1c	96	71.758	ENSEASG00005003338	POLR1C	100	71.758	Equus_asinus_asinus
ENSDARG00000039400	polr1c	96	71.839	ENSECAG00000023516	POLR1C	99	71.839	Equus_caballus
ENSDARG00000039400	polr1c	95	72.464	ENSEEUG00000005471	POLR1C	99	72.464	Erinaceus_europaeus
ENSDARG00000039400	polr1c	96	82.421	ENSELUG00000013027	polr1c	100	82.421	Esox_lucius
ENSDARG00000039400	polr1c	96	71.470	ENSFCAG00000009735	POLR1C	100	71.470	Felis_catus
ENSDARG00000039400	polr1c	89	72.446	ENSFALG00000012111	POLR1C	100	72.446	Ficedula_albicollis
ENSDARG00000039400	polr1c	96	71.758	ENSFDAG00000008428	POLR1C	100	71.758	Fukomys_damarensis
ENSDARG00000039400	polr1c	88	79.310	ENSFHEG00000000262	polr1c	100	69.452	Fundulus_heteroclitus
ENSDARG00000039400	polr1c	93	74.866	ENSFHEG00000013867	-	90	75.401	Fundulus_heteroclitus
ENSDARG00000039400	polr1c	89	81.173	ENSGMOG00000013878	polr1c	100	81.173	Gadus_morhua
ENSDARG00000039400	polr1c	96	71.182	ENSGALG00000010349	POLR1C	100	71.182	Gallus_gallus
ENSDARG00000039400	polr1c	96	79.487	ENSGAFG00000010153	polr1c	100	79.772	Gambusia_affinis
ENSDARG00000039400	polr1c	96	77.778	ENSGACG00000002453	polr1c	100	78.632	Gasterosteus_aculeatus
ENSDARG00000039400	polr1c	97	73.504	ENSGAGG00000010640	POLR1C	100	73.504	Gopherus_agassizii
ENSDARG00000039400	polr1c	97	71.225	ENSGGOG00000010903	POLR1C	100	71.470	Gorilla_gorilla
ENSDARG00000039400	polr1c	96	74.928	ENSHBUG00000017816	polr1c	100	74.928	Haplochromis_burtoni
ENSDARG00000039400	polr1c	52	31.606	ENSHBUG00000023040	polr2c	77	31.606	Haplochromis_burtoni
ENSDARG00000039400	polr1c	96	71.470	ENSHGLG00000019441	POLR1C	100	71.538	Heterocephalus_glaber_female
ENSDARG00000039400	polr1c	96	71.758	ENSHGLG00100005970	POLR1C	100	71.758	Heterocephalus_glaber_male
ENSDARG00000039400	polr1c	95	76.081	ENSHCOG00000002179	polr1c	99	76.081	Hippocampus_comes
ENSDARG00000039400	polr1c	95	87.791	ENSIPUG00000024464	polr1c	99	87.791	Ictalurus_punctatus
ENSDARG00000039400	polr1c	96	71.470	ENSSTOG00000010631	POLR1C	100	71.470	Ictidomys_tridecemlineatus
ENSDARG00000039400	polr1c	96	71.470	ENSJJAG00000023110	Polr1c	100	71.470	Jaculus_jaculus
ENSDARG00000039400	polr1c	96	78.977	ENSKMAG00000014305	polr1c	98	79.261	Kryptolebias_marmoratus
ENSDARG00000039400	polr1c	96	80.342	ENSLBEG00000014925	polr1c	100	81.197	Labrus_bergylta
ENSDARG00000039400	polr1c	91	59.517	ENSLACG00000012567	POLR1C	98	59.517	Latimeria_chalumnae
ENSDARG00000039400	polr1c	98	79.718	ENSLOCG00000016710	polr1c	98	79.718	Lepisosteus_oculatus
ENSDARG00000039400	polr1c	83	72.425	ENSLAFG00000026248	POLR1C	100	72.425	Loxodonta_africana
ENSDARG00000039400	polr1c	56	31.068	ENSLAFG00000027230	POLR2C	72	31.068	Loxodonta_africana
ENSDARG00000039400	polr1c	97	70.940	ENSMFAG00000046295	POLR1C	100	71.182	Macaca_fascicularis
ENSDARG00000039400	polr1c	96	71.182	ENSMMUG00000015192	POLR1C	100	71.182	Macaca_mulatta
ENSDARG00000039400	polr1c	97	70.940	ENSMNEG00000028073	POLR1C	100	71.182	Macaca_nemestrina
ENSDARG00000039400	polr1c	97	70.940	ENSMLEG00000034818	POLR1C	100	71.182	Mandrillus_leucophaeus
ENSDARG00000039400	polr1c	96	83.191	ENSMAMG00000008700	polr1c	100	83.191	Mastacembelus_armatus
ENSDARG00000039400	polr1c	96	80.342	ENSMZEG00005018545	polr1c	100	81.197	Maylandia_zebra
ENSDARG00000039400	polr1c	76	71.898	ENSMGAG00000011020	POLR1C	96	71.898	Meleagris_gallopavo
ENSDARG00000039400	polr1c	96	70.893	ENSMAUG00000014329	Polr1c	100	70.893	Mesocricetus_auratus
ENSDARG00000039400	polr1c	96	70.690	ENSMICG00000005027	POLR1C	100	70.605	Microcebus_murinus
ENSDARG00000039400	polr1c	96	71.758	ENSMOCG00000017549	Polr1c	100	71.758	Microtus_ochrogaster
ENSDARG00000039400	polr1c	91	72.778	ENSMMOG00000005380	polr1c	99	67.630	Mola_mola
ENSDARG00000039400	polr1c	80	75.517	ENSMODG00000018964	POLR1C	99	75.517	Monodelphis_domestica
ENSDARG00000039400	polr1c	85	83.929	ENSMALG00000011711	polr1c	100	71.470	Monopterus_albus
ENSDARG00000039400	polr1c	96	63.401	MGP_CAROLIEiJ_G0021662	Polr1c	100	71.154	Mus_caroli
ENSDARG00000039400	polr1c	96	71.758	ENSMUSG00000067148	Polr1c	99	72.816	Mus_musculus
ENSDARG00000039400	polr1c	96	71.470	MGP_PahariEiJ_G0020654	Polr1c	99	72.816	Mus_pahari
ENSDARG00000039400	polr1c	96	71.758	MGP_SPRETEiJ_G0022574	Polr1c	99	72.816	Mus_spretus
ENSDARG00000039400	polr1c	96	71.839	ENSMPUG00000012916	POLR1C	91	71.839	Mustela_putorius_furo
ENSDARG00000039400	polr1c	96	72.126	ENSMLUG00000017751	POLR1C	100	72.126	Myotis_lucifugus
ENSDARG00000039400	polr1c	96	71.470	ENSNGAG00000023487	Polr1c	99	73.448	Nannospalax_galili
ENSDARG00000039400	polr1c	61	31.061	ENSNBRG00000003952	polr2c	67	32.143	Neolamprologus_brichardi
ENSDARG00000039400	polr1c	96	80.912	ENSNBRG00000018742	polr1c	100	81.481	Neolamprologus_brichardi
ENSDARG00000039400	polr1c	96	71.758	ENSNLEG00000004035	POLR1C	100	71.758	Nomascus_leucogenys
ENSDARG00000039400	polr1c	90	71.348	ENSMEUG00000006778	POLR1C	99	60.580	Notamacropus_eugenii
ENSDARG00000039400	polr1c	91	70.000	ENSOPRG00000000145	POLR1C	100	70.632	Ochotona_princeps
ENSDARG00000039400	polr1c	96	73.199	ENSODEG00000015831	-	100	73.199	Octodon_degus
ENSDARG00000039400	polr1c	60	71.560	ENSODEG00000017109	-	99	71.560	Octodon_degus
ENSDARG00000039400	polr1c	96	80.737	ENSONIG00000013133	polr1c	99	81.586	Oreochromis_niloticus
ENSDARG00000039400	polr1c	95	69.275	ENSOANG00000003043	POLR1C	99	69.275	Ornithorhynchus_anatinus
ENSDARG00000039400	polr1c	96	71.839	ENSOCUG00000005504	POLR1C	100	71.839	Oryctolagus_cuniculus
ENSDARG00000039400	polr1c	95	76.724	ENSORLG00000019743	polr1c	99	76.724	Oryzias_latipes
ENSDARG00000039400	polr1c	73	61.232	ENSORLG00020005555	polr1c	81	61.232	Oryzias_latipes_hni
ENSDARG00000039400	polr1c	95	77.586	ENSORLG00020006489	POLR1C	99	77.586	Oryzias_latipes_hni
ENSDARG00000039400	polr1c	95	76.724	ENSORLG00015013322	polr1c	99	76.724	Oryzias_latipes_hsok
ENSDARG00000039400	polr1c	95	78.448	ENSOMEG00000016527	polr1c	99	78.448	Oryzias_melastigma
ENSDARG00000039400	polr1c	95	71.470	ENSOGAG00000016318	POLR1C	99	71.470	Otolemur_garnettii
ENSDARG00000039400	polr1c	96	71.470	ENSOARG00000007503	POLR1C	100	71.470	Ovis_aries
ENSDARG00000039400	polr1c	97	71.225	ENSPPAG00000043678	POLR1C	100	71.470	Pan_paniscus
ENSDARG00000039400	polr1c	96	71.470	ENSPPRG00000009760	POLR1C	100	71.470	Panthera_pardus
ENSDARG00000039400	polr1c	96	71.470	ENSPTIG00000014813	POLR1C	100	71.470	Panthera_tigris_altaica
ENSDARG00000039400	polr1c	97	71.225	ENSPTRG00000018202	POLR1C	100	71.470	Pan_troglodytes
ENSDARG00000039400	polr1c	97	71.225	ENSPANG00000009025	POLR1C	100	71.225	Papio_anubis
ENSDARG00000039400	polr1c	96	82.421	ENSPKIG00000009858	polr1c	100	82.421	Paramormyrops_kingsleyae
ENSDARG00000039400	polr1c	99	72.981	ENSPSIG00000012580	POLR1C	96	72.981	Pelodiscus_sinensis
ENSDARG00000039400	polr1c	91	75.556	ENSPMGG00000012121	polr1c	100	70.317	Periophthalmus_magnuspinnatus
ENSDARG00000039400	polr1c	52	31.088	ENSPMGG00000021249	polr2c	75	31.088	Periophthalmus_magnuspinnatus
ENSDARG00000039400	polr1c	96	71.470	ENSPEMG00000006970	Polr1c	100	71.470	Peromyscus_maniculatus_bairdii
ENSDARG00000039400	polr1c	62	33.571	ENSPMAG00000004827	polr2c	86	32.524	Petromyzon_marinus
ENSDARG00000039400	polr1c	96	69.143	ENSPMAG00000005560	polr1c	100	69.143	Petromyzon_marinus
ENSDARG00000039400	polr1c	98	72.238	ENSPCIG00000028137	POLR1C	100	72.238	Phascolarctos_cinereus
ENSDARG00000039400	polr1c	96	79.772	ENSPFOG00000014342	POLR1C	100	80.057	Poecilia_formosa
ENSDARG00000039400	polr1c	98	78.992	ENSPFOG00000014357	polr1c	100	79.272	Poecilia_formosa
ENSDARG00000039400	polr1c	65	82.031	ENSPLAG00000003902	polr1c	97	82.031	Poecilia_latipinna
ENSDARG00000039400	polr1c	66	75.314	ENSPLAG00000004111	polr1c	99	75.314	Poecilia_latipinna
ENSDARG00000039400	polr1c	96	79.772	ENSPMEG00000011877	-	100	80.057	Poecilia_mexicana
ENSDARG00000039400	polr1c	96	79.772	ENSPMEG00000008420	polr1c	100	80.057	Poecilia_mexicana
ENSDARG00000039400	polr1c	96	80.692	ENSPREG00000007985	polr1c	100	80.692	Poecilia_reticulata
ENSDARG00000039400	polr1c	96	71.470	ENSPPYG00000016645	POLR1C	100	71.470	Pongo_abelii
ENSDARG00000039400	polr1c	96	71.182	ENSPCOG00000024628	POLR1C	100	71.182	Propithecus_coquereli
ENSDARG00000039400	polr1c	96	65.130	ENSPVAG00000005689	POLR1C	100	65.130	Pteropus_vampyrus
ENSDARG00000039400	polr1c	96	80.453	ENSPNYG00000003620	polr1c	100	81.197	Pundamilia_nyererei
ENSDARG00000039400	polr1c	96	89.049	ENSPNAG00000008443	polr1c	100	89.049	Pygocentrus_nattereri
ENSDARG00000039400	polr1c	96	70.893	ENSRNOG00000019079	Polr1c	100	70.893	Rattus_norvegicus
ENSDARG00000039400	polr1c	97	71.510	ENSRBIG00000007155	POLR1C	100	71.758	Rhinopithecus_bieti
ENSDARG00000039400	polr1c	97	71.225	ENSRROG00000000257	POLR1C	100	71.470	Rhinopithecus_roxellana
ENSDARG00000039400	polr1c	87	51.735	YPR110C	RPC40	94	51.735	Saccharomyces_cerevisiae
ENSDARG00000039400	polr1c	96	71.758	ENSSBOG00000025735	POLR1C	99	71.429	Saimiri_boliviensis_boliviensis
ENSDARG00000039400	polr1c	95	66.087	ENSSHAG00000014456	POLR1C	99	66.087	Sarcophilus_harrisii
ENSDARG00000039400	polr1c	96	84.438	ENSSFOG00015019860	polr1c	100	84.438	Scleropages_formosus
ENSDARG00000039400	polr1c	96	83.285	ENSSMAG00000018865	polr1c	100	83.285	Scophthalmus_maximus
ENSDARG00000039400	polr1c	97	81.180	ENSSDUG00000015745	polr1c	93	82.022	Seriola_dumerili
ENSDARG00000039400	polr1c	97	80.899	ENSSLDG00000018285	polr1c	93	81.742	Seriola_lalandi_dorsalis
ENSDARG00000039400	polr1c	95	70.262	ENSSPUG00000011822	POLR1C	99	70.262	Sphenodon_punctatus
ENSDARG00000039400	polr1c	96	78.632	ENSSPAG00000022369	polr1c	100	79.487	Stegastes_partitus
ENSDARG00000039400	polr1c	96	71.264	ENSSSCG00000028007	POLR1C	99	71.264	Sus_scrofa
ENSDARG00000039400	polr1c	92	72.289	ENSTGUG00000009159	POLR1C	99	72.289	Taeniopygia_guttata
ENSDARG00000039400	polr1c	96	78.286	ENSTRUG00000006264	polr1c	99	78.286	Takifugu_rubripes
ENSDARG00000039400	polr1c	73	69.962	ENSTTRG00000006344	POLR1C	76	69.962	Tursiops_truncatus
ENSDARG00000039400	polr1c	96	71.758	ENSUAMG00000025602	POLR1C	100	71.758	Ursus_americanus
ENSDARG00000039400	polr1c	96	71.758	ENSUMAG00000005938	POLR1C	100	71.758	Ursus_maritimus
ENSDARG00000039400	polr1c	96	69.452	ENSVVUG00000028922	POLR1C	100	69.452	Vulpes_vulpes
ENSDARG00000039400	polr1c	96	70.690	ENSXETG00000010882	polr1c	100	70.690	Xenopus_tropicalis
ENSDARG00000039400	polr1c	96	80.460	ENSXCOG00000014185	polr1c	100	80.460	Xiphophorus_couchianus
ENSDARG00000039400	polr1c	96	79.487	ENSXMAG00000015076	polr1c	100	79.772	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0042254	ribosome biogenesis	27448281.	IMP	Process
GO:0046983	protein dimerization activity	-	IEA	Function
GO:0048703	embryonic viscerocranium morphogenesis	27448281.	IMP	Process
GO:0051216	cartilage development	27448281.	IMP	Process
GO:1904888	cranial skeletal system development	26972049.	IMP	Process