EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000039910 (Gene tree)
Gene ID: 445360
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 18478 bases
Position: chr16:44881829-44900306
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000058379	RRM_1	PF00076.22	2.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000058380	-	1804	-	ENSDARP00000058379	402 (aa)	-	A0A0R4I9C3

Gene Model

Click here to download ENSDARG00000039910's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000039910's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000039910	rbm42	100	70.218	ENSAPOG00000015109	rbm42	100	66.825	Acanthochromis_polyacanthus
ENSDARG00000039910	rbm42	100	68.204	ENSACIG00000010771	rbm42	100	66.586	Amphilophus_citrinellus
ENSDARG00000039910	rbm42	100	70.218	ENSAOCG00000008873	rbm42	100	66.588	Amphiprion_ocellaris
ENSDARG00000039910	rbm42	100	70.218	ENSAPEG00000012051	rbm42	99	66.588	Amphiprion_percula
ENSDARG00000039910	rbm42	100	69.830	ENSATEG00000000536	rbm42	100	69.438	Anabas_testudineus
ENSDARG00000039910	rbm42	100	72.573	ENSACLG00000004988	rbm42	100	71.046	Astatotilapia_calliptera
ENSDARG00000039910	rbm42	100	82.238	ENSAMXG00000016545	rbm42	100	81.022	Astyanax_mexicanus
ENSDARG00000039910	rbm42	97	64.235	ENSCSEG00000010248	rbm42	100	66.262	Cynoglossus_semilaevis
ENSDARG00000039910	rbm42	100	67.933	ENSCVAG00000015589	rbm42	100	71.845	Cyprinodon_variegatus
ENSDARG00000039910	rbm42	100	75.837	ENSELUG00000022403	rbm42	100	74.641	Esox_lucius
ENSDARG00000039910	rbm42	54	80.717	ENSFHEG00000006764	rbm42	78	78.298	Fundulus_heteroclitus
ENSDARG00000039910	rbm42	100	67.397	ENSGMOG00000012660	rbm42	100	67.554	Gadus_morhua
ENSDARG00000039910	rbm42	77	68.454	ENSGAFG00000009059	rbm42	99	65.109	Gambusia_affinis
ENSDARG00000039910	rbm42	100	68.856	ENSGACG00000004170	rbm42	100	67.476	Gasterosteus_aculeatus
ENSDARG00000039910	rbm42	100	72.573	ENSHBUG00000011141	rbm42	100	71.046	Haplochromis_burtoni
ENSDARG00000039910	rbm42	100	69.249	ENSHCOG00000021214	rbm42	100	66.194	Hippocampus_comes
ENSDARG00000039910	rbm42	100	80.918	ENSIPUG00000022365	rbm42	99	79.710	Ictalurus_punctatus
ENSDARG00000039910	rbm42	91	65.873	ENSKMAG00000015287	rbm42	99	63.731	Kryptolebias_marmoratus
ENSDARG00000039910	rbm42	100	71.463	ENSLBEG00000017547	rbm42	100	68.571	Labrus_bergylta
ENSDARG00000039910	rbm42	85	70.893	ENSLBEG00000004578	-	96	67.507	Labrus_bergylta
ENSDARG00000039910	rbm42	100	71.599	ENSLOCG00000003368	rbm42	100	69.860	Lepisosteus_oculatus
ENSDARG00000039910	rbm42	100	68.856	ENSMAMG00000006708	rbm42	100	69.082	Mastacembelus_armatus
ENSDARG00000039910	rbm42	100	72.573	ENSMZEG00005025234	rbm42	100	71.046	Maylandia_zebra
ENSDARG00000039910	rbm42	100	63.325	ENSMALG00000015720	rbm42	100	67.905	Monopterus_albus
ENSDARG00000039910	rbm42	100	72.397	ENSONIG00000008029	rbm42	100	70.673	Oreochromis_niloticus
ENSDARG00000039910	rbm42	100	59.906	ENSORLG00020022507	rbm42	54	71.983	Oryzias_latipes_hni
ENSDARG00000039910	rbm42	100	68.780	ENSORLG00015000659	rbm42	100	67.062	Oryzias_latipes_hsok
ENSDARG00000039910	rbm42	70	69.718	ENSOMEG00000014332	rbm42	88	80.172	Oryzias_melastigma
ENSDARG00000039910	rbm42	100	78.537	ENSPKIG00000015165	rbm42	100	75.610	Paramormyrops_kingsleyae
ENSDARG00000039910	rbm42	73	79.144	ENSPMGG00000003569	rbm42	100	94.286	Periophthalmus_magnuspinnatus
ENSDARG00000039910	rbm42	53	56.502	ENSPMAG00000008633	rbm42	100	48.936	Petromyzon_marinus
ENSDARG00000039910	rbm42	100	69.024	ENSPFOG00000007701	rbm42	100	65.796	Poecilia_formosa
ENSDARG00000039910	rbm42	100	69.024	ENSPLAG00000009405	rbm42	100	65.796	Poecilia_latipinna
ENSDARG00000039910	rbm42	100	69.024	ENSPMEG00000010375	rbm42	100	65.796	Poecilia_mexicana
ENSDARG00000039910	rbm42	100	69.268	ENSPREG00000018102	rbm42	100	66.033	Poecilia_reticulata
ENSDARG00000039910	rbm42	100	72.573	ENSPNYG00000014460	rbm42	100	71.046	Pundamilia_nyererei
ENSDARG00000039910	rbm42	100	81.687	ENSPNAG00000009961	rbm42	100	80.241	Pygocentrus_nattereri
ENSDARG00000039910	rbm42	100	76.259	ENSSFOG00015019227	rbm42	100	75.000	Scleropages_formosus
ENSDARG00000039910	rbm42	100	71.429	ENSSMAG00000011935	rbm42	100	66.508	Scophthalmus_maximus
ENSDARG00000039910	rbm42	100	71.429	ENSSDUG00000004033	rbm42	100	70.531	Seriola_dumerili
ENSDARG00000039910	rbm42	100	60.284	ENSSLDG00000009918	rbm42	100	82.716	Seriola_lalandi_dorsalis
ENSDARG00000039910	rbm42	100	70.631	ENSSPAG00000019871	rbm42	100	67.062	Stegastes_partitus
ENSDARG00000039910	rbm42	100	65.375	ENSTRUG00000024586	-	76	62.143	Takifugu_rubripes
ENSDARG00000039910	rbm42	99	54.066	ENSTNIG00000011669	rbm42	100	55.702	Tetraodon_nigroviridis
ENSDARG00000039910	rbm42	100	58.865	ENSXETG00000017599	rbm42	100	56.250	Xenopus_tropicalis
ENSDARG00000039910	rbm42	100	68.447	ENSXMAG00000012827	rbm42	100	66.190	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002088	lens development in camera-type eye	15716491.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component