EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000039989 (Gene tree)
Gene ID: 325757
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: small nuclear ribonucleoprotein 48 (U11/U12)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5075 bases
Position: chr16:36974523-36979597
Accession: ZDB-GENE-030131-4482
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000136650	zf-U11-48K	PF05253.12	2.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000168443	-	1213	XM_021466624	ENSDARP00000136650	333 (aa)	XP_021322299	A0A0R4IMG9
ENSDART00000168599	-	767	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000039989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000039989's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000039989	snrnp48	83	45.205	ENSG00000168566	SNRNP48	81	46.503	Homo_sapiens
ENSDARG00000039989	snrnp48	80	57.299	ENSAPOG00000021430	snrnp48	93	52.941	Acanthochromis_polyacanthus
ENSDARG00000039989	snrnp48	87	46.104	ENSAMEG00000017349	SNRNP48	82	45.486	Ailuropoda_melanoleuca
ENSDARG00000039989	snrnp48	89	52.333	ENSACIG00000002032	snrnp48	93	49.845	Amphilophus_citrinellus
ENSDARG00000039989	snrnp48	83	55.477	ENSAOCG00000010562	snrnp48	95	51.807	Amphiprion_ocellaris
ENSDARG00000039989	snrnp48	83	54.965	ENSAPEG00000003231	snrnp48	95	51.360	Amphiprion_percula
ENSDARG00000039989	snrnp48	81	54.417	ENSATEG00000020210	snrnp48	95	51.818	Anabas_testudineus
ENSDARG00000039989	snrnp48	83	49.653	ENSACAG00000002811	SNRNP48	76	51.852	Anolis_carolinensis
ENSDARG00000039989	snrnp48	83	45.548	ENSANAG00000033538	SNRNP48	81	46.853	Aotus_nancymaae
ENSDARG00000039989	snrnp48	93	59.813	ENSAMXG00000015309	snrnp48	93	59.248	Astyanax_mexicanus
ENSDARG00000039989	snrnp48	78	45.788	ENSBTAG00000001123	SNRNP48	81	45.775	Bos_taurus
ENSDARG00000039989	snrnp48	83	45.548	ENSCJAG00000021330	SNRNP48	82	46.690	Callithrix_jacchus
ENSDARG00000039989	snrnp48	87	46.711	ENSCAFG00000009574	SNRNP48	68	46.127	Canis_familiaris
ENSDARG00000039989	snrnp48	87	46.711	ENSCAFG00020013203	SNRNP48	81	46.127	Canis_lupus_dingo
ENSDARG00000039989	snrnp48	93	41.916	ENSCHIG00000015216	SNRNP48	81	45.423	Capra_hircus
ENSDARG00000039989	snrnp48	83	44.291	ENSTSYG00000000698	SNRNP48	81	45.583	Carlito_syrichta
ENSDARG00000039989	snrnp48	88	44.444	ENSCAPG00000006768	SNRNP48	81	47.674	Cavia_aperea
ENSDARG00000039989	snrnp48	96	43.109	ENSCPOG00000007910	SNRNP48	81	46.831	Cavia_porcellus
ENSDARG00000039989	snrnp48	83	45.548	ENSCCAG00000035652	SNRNP48	81	46.853	Cebus_capucinus
ENSDARG00000039989	snrnp48	88	45.603	ENSCATG00000033947	SNRNP48	81	46.154	Cercocebus_atys
ENSDARG00000039989	snrnp48	83	45.172	ENSCLAG00000003765	SNRNP48	81	46.479	Chinchilla_lanigera
ENSDARG00000039989	snrnp48	83	46.575	ENSCSAG00000007409	SNRNP48	81	46.853	Chlorocebus_sabaeus
ENSDARG00000039989	snrnp48	83	48.161	ENSCPBG00000019146	SNRNP48	77	52.191	Chrysemys_picta_bellii
ENSDARG00000039989	snrnp48	80	32.192	ENSCING00000004121	-	61	32.243	Ciona_intestinalis
ENSDARG00000039989	snrnp48	83	45.548	ENSCANG00000030017	SNRNP48	81	46.853	Colobus_angolensis_palliatus
ENSDARG00000039989	snrnp48	86	39.597	ENSCGRG00001008805	-	87	38.989	Cricetulus_griseus_chok1gshd
ENSDARG00000039989	snrnp48	96	42.643	ENSCGRG00001001076	-	82	45.035	Cricetulus_griseus_chok1gshd
ENSDARG00000039989	snrnp48	96	42.643	ENSCGRG00000007781	Snrnp48	82	45.035	Cricetulus_griseus_crigri
ENSDARG00000039989	snrnp48	73	55.600	ENSCSEG00000000722	snrnp48	78	55.235	Cynoglossus_semilaevis
ENSDARG00000039989	snrnp48	93	48.760	ENSCVAG00000019829	snrnp48	71	56.318	Cyprinodon_variegatus
ENSDARG00000039989	snrnp48	83	45.017	ENSDNOG00000014978	SNRNP48	85	42.735	Dasypus_novemcinctus
ENSDARG00000039989	snrnp48	96	40.936	ENSDORG00000015140	Snrnp48	81	43.860	Dipodomys_ordii
ENSDARG00000039989	snrnp48	83	44.138	ENSEASG00005012021	SNRNP48	81	45.423	Equus_asinus_asinus
ENSDARG00000039989	snrnp48	83	44.138	ENSECAG00000026937	SNRNP48	81	44.366	Equus_caballus
ENSDARG00000039989	snrnp48	83	31.724	ENSEEUG00000015437	SNRNP48	81	31.690	Erinaceus_europaeus
ENSDARG00000039989	snrnp48	92	55.380	ENSELUG00000009766	snrnp48	94	53.254	Esox_lucius
ENSDARG00000039989	snrnp48	83	45.172	ENSFCAG00000018853	SNRNP48	81	45.423	Felis_catus
ENSDARG00000039989	snrnp48	74	50.973	ENSFALG00000007797	SNRNP48	79	51.613	Ficedula_albicollis
ENSDARG00000039989	snrnp48	96	41.642	ENSFDAG00000009231	SNRNP48	81	44.366	Fukomys_damarensis
ENSDARG00000039989	snrnp48	59	61.084	ENSFHEG00000014647	snrnp48	93	53.405	Fundulus_heteroclitus
ENSDARG00000039989	snrnp48	92	50.645	ENSGMOG00000018599	-	91	53.287	Gadus_morhua
ENSDARG00000039989	snrnp48	77	50.187	ENSGALG00000013005	SNRNP48	81	50.826	Gallus_gallus
ENSDARG00000039989	snrnp48	79	58.148	ENSGAFG00000021639	snrnp48	92	54.062	Gambusia_affinis
ENSDARG00000039989	snrnp48	71	55.738	ENSGACG00000017756	-	95	50.000	Gasterosteus_aculeatus
ENSDARG00000039989	snrnp48	83	48.161	ENSGAGG00000000865	SNRNP48	87	48.621	Gopherus_agassizii
ENSDARG00000039989	snrnp48	83	45.548	ENSGGOG00000013220	SNRNP48	81	46.853	Gorilla_gorilla
ENSDARG00000039989	snrnp48	93	54.259	ENSHBUG00000017066	snrnp48	91	52.012	Haplochromis_burtoni
ENSDARG00000039989	snrnp48	83	45.172	ENSHGLG00000015241	SNRNP48	81	45.423	Heterocephalus_glaber_female
ENSDARG00000039989	snrnp48	83	45.172	ENSHGLG00100010027	SNRNP48	81	45.423	Heterocephalus_glaber_male
ENSDARG00000039989	snrnp48	74	55.952	ENSHCOG00000014066	snrnp48	94	50.301	Hippocampus_comes
ENSDARG00000039989	snrnp48	83	46.552	ENSSTOG00000014635	SNRNP48	81	46.831	Ictidomys_tridecemlineatus
ENSDARG00000039989	snrnp48	83	42.712	ENSJJAG00000011495	Snrnp48	81	42.907	Jaculus_jaculus
ENSDARG00000039989	snrnp48	96	53.374	ENSKMAG00000016514	snrnp48	93	52.439	Kryptolebias_marmoratus
ENSDARG00000039989	snrnp48	79	56.250	ENSLBEG00000026249	snrnp48	93	51.988	Labrus_bergylta
ENSDARG00000039989	snrnp48	93	48.485	ENSLACG00000003958	SNRNP48	85	49.147	Latimeria_chalumnae
ENSDARG00000039989	snrnp48	83	60.000	ENSLOCG00000004187	snrnp48	93	56.481	Lepisosteus_oculatus
ENSDARG00000039989	snrnp48	80	46.263	ENSLAFG00000011152	SNRNP48	81	47.331	Loxodonta_africana
ENSDARG00000039989	snrnp48	83	45.548	ENSMFAG00000045216	SNRNP48	81	46.853	Macaca_fascicularis
ENSDARG00000039989	snrnp48	83	45.548	ENSMMUG00000014785	SNRNP48	81	46.853	Macaca_mulatta
ENSDARG00000039989	snrnp48	83	45.548	ENSMNEG00000042269	SNRNP48	81	46.853	Macaca_nemestrina
ENSDARG00000039989	snrnp48	83	45.548	ENSMLEG00000034004	SNRNP48	81	46.853	Mandrillus_leucophaeus
ENSDARG00000039989	snrnp48	96	52.000	ENSMAMG00000018673	snrnp48	82	54.154	Mastacembelus_armatus
ENSDARG00000039989	snrnp48	83	48.495	ENSMGAG00000006037	SNRNP48	83	51.020	Meleagris_gallopavo
ENSDARG00000039989	snrnp48	96	43.713	ENSMAUG00000011944	Snrnp48	82	46.290	Mesocricetus_auratus
ENSDARG00000039989	snrnp48	81	46.290	ENSMICG00000012497	SNRNP48	81	47.350	Microcebus_murinus
ENSDARG00000039989	snrnp48	92	43.533	ENSMOCG00000015555	Snrnp48	82	45.390	Microtus_ochrogaster
ENSDARG00000039989	snrnp48	54	57.754	ENSMMOG00000003072	-	59	57.754	Mola_mola
ENSDARG00000039989	snrnp48	84	48.485	ENSMODG00000009996	SNRNP48	80	48.485	Monodelphis_domestica
ENSDARG00000039989	snrnp48	81	55.273	ENSMALG00000005725	snrnp48	94	52.454	Monopterus_albus
ENSDARG00000039989	snrnp48	96	42.687	MGP_CAROLIEiJ_G0018441	Snrnp48	82	45.070	Mus_caroli
ENSDARG00000039989	snrnp48	96	42.687	ENSMUSG00000021431	Snrnp48	82	45.070	Mus_musculus
ENSDARG00000039989	snrnp48	96	43.243	MGP_PahariEiJ_G0019509	Snrnp48	82	45.745	Mus_pahari
ENSDARG00000039989	snrnp48	96	42.985	MGP_SPRETEiJ_G0019321	Snrnp48	82	45.423	Mus_spretus
ENSDARG00000039989	snrnp48	96	41.888	ENSNGAG00000004849	Snrnp48	81	45.745	Nannospalax_galili
ENSDARG00000039989	snrnp48	93	54.574	ENSNBRG00000012127	snrnp48	90	52.516	Neolamprologus_brichardi
ENSDARG00000039989	snrnp48	83	45.548	ENSNLEG00000011667	SNRNP48	81	46.853	Nomascus_leucogenys
ENSDARG00000039989	snrnp48	91	43.590	ENSOPRG00000015471	SNRNP48	86	45.161	Ochotona_princeps
ENSDARG00000039989	snrnp48	96	53.374	ENSONIG00000001520	snrnp48	93	51.376	Oreochromis_niloticus
ENSDARG00000039989	snrnp48	54	39.130	ENSOANG00000019888	-	99	38.647	Ornithorhynchus_anatinus
ENSDARG00000039989	snrnp48	80	43.841	ENSOCUG00000005168	SNRNP48	91	44.128	Oryctolagus_cuniculus
ENSDARG00000039989	snrnp48	87	55.743	ENSORLG00000015654	snrnp48	89	54.232	Oryzias_latipes
ENSDARG00000039989	snrnp48	87	55.068	ENSORLG00020015976	snrnp48	78	53.086	Oryzias_latipes_hni
ENSDARG00000039989	snrnp48	87	55.068	ENSORLG00015022379	snrnp48	77	53.605	Oryzias_latipes_hsok
ENSDARG00000039989	snrnp48	81	56.522	ENSOMEG00000022007	snrnp48	91	52.778	Oryzias_melastigma
ENSDARG00000039989	snrnp48	98	41.471	ENSOGAG00000005275	SNRNP48	98	41.176	Otolemur_garnettii
ENSDARG00000039989	snrnp48	76	45.725	ENSOARG00000017319	SNRNP48	80	48.945	Ovis_aries
ENSDARG00000039989	snrnp48	83	45.548	ENSPPAG00000032873	SNRNP48	81	46.853	Pan_paniscus
ENSDARG00000039989	snrnp48	83	45.517	ENSPPRG00000004283	SNRNP48	81	45.775	Panthera_pardus
ENSDARG00000039989	snrnp48	68	48.936	ENSPTIG00000013502	SNRNP48	79	48.936	Panthera_tigris_altaica
ENSDARG00000039989	snrnp48	83	45.548	ENSPTRG00000017703	SNRNP48	81	46.853	Pan_troglodytes
ENSDARG00000039989	snrnp48	83	45.548	ENSPANG00000000771	SNRNP48	81	46.853	Papio_anubis
ENSDARG00000039989	snrnp48	89	56.748	ENSPKIG00000013703	snrnp48	61	60.069	Paramormyrops_kingsleyae
ENSDARG00000039989	snrnp48	79	48.201	ENSPSIG00000002213	SNRNP48	78	50.598	Pelodiscus_sinensis
ENSDARG00000039989	snrnp48	72	49.600	ENSPMGG00000008120	snrnp48	88	49.600	Periophthalmus_magnuspinnatus
ENSDARG00000039989	snrnp48	96	43.284	ENSPEMG00000008872	Snrnp48	82	45.775	Peromyscus_maniculatus_bairdii
ENSDARG00000039989	snrnp48	79	57.778	ENSPFOG00000003578	snrnp48	92	54.062	Poecilia_formosa
ENSDARG00000039989	snrnp48	71	55.686	ENSPLAG00000002290	snrnp48	88	55.686	Poecilia_latipinna
ENSDARG00000039989	snrnp48	79	57.778	ENSPMEG00000018033	snrnp48	92	54.062	Poecilia_mexicana
ENSDARG00000039989	snrnp48	79	58.148	ENSPREG00000018541	snrnp48	92	55.000	Poecilia_reticulata
ENSDARG00000039989	snrnp48	83	44.521	ENSPPYG00000016209	SNRNP48	81	45.804	Pongo_abelii
ENSDARG00000039989	snrnp48	70	36.214	ENSPCAG00000011991	SNRNP48	95	37.402	Procavia_capensis
ENSDARG00000039989	snrnp48	83	45.329	ENSPVAG00000002854	SNRNP48	81	46.643	Pteropus_vampyrus
ENSDARG00000039989	snrnp48	92	54.777	ENSPNYG00000015399	snrnp48	89	55.755	Pundamilia_nyererei
ENSDARG00000039989	snrnp48	96	43.544	ENSRNOG00000013756	Snrnp48	82	46.099	Rattus_norvegicus
ENSDARG00000039989	snrnp48	83	45.548	ENSRBIG00000043856	SNRNP48	88	46.853	Rhinopithecus_bieti
ENSDARG00000039989	snrnp48	83	45.205	ENSRROG00000043229	SNRNP48	81	46.503	Rhinopithecus_roxellana
ENSDARG00000039989	snrnp48	83	45.890	ENSSBOG00000019486	SNRNP48	81	47.203	Saimiri_boliviensis_boliviensis
ENSDARG00000039989	snrnp48	83	46.801	ENSSHAG00000014483	SNRNP48	85	46.801	Sarcophilus_harrisii
ENSDARG00000039989	snrnp48	74	56.439	ENSSFOG00015006610	snrnp48	73	54.693	Scleropages_formosus
ENSDARG00000039989	snrnp48	91	53.420	ENSSDUG00000014953	snrnp48	93	52.923	Seriola_dumerili
ENSDARG00000039989	snrnp48	89	53.821	ENSSLDG00000005989	snrnp48	92	53.292	Seriola_lalandi_dorsalis
ENSDARG00000039989	snrnp48	74	50.000	ENSSPUG00000006257	SNRNP48	70	51.029	Sphenodon_punctatus
ENSDARG00000039989	snrnp48	83	55.477	ENSSPAG00000006454	snrnp48	94	51.988	Stegastes_partitus
ENSDARG00000039989	snrnp48	81	49.477	ENSTGUG00000007575	SNRNP48	80	51.172	Taeniopygia_guttata
ENSDARG00000039989	snrnp48	74	54.724	ENSTRUG00000007031	snrnp48	93	48.930	Takifugu_rubripes
ENSDARG00000039989	snrnp48	96	46.951	ENSTNIG00000012977	-	94	46.562	Tetraodon_nigroviridis
ENSDARG00000039989	snrnp48	73	47.638	ENSTBEG00000015620	SNRNP48	75	47.638	Tupaia_belangeri
ENSDARG00000039989	snrnp48	80	44.964	ENSTTRG00000016715	SNRNP48	81	44.523	Tursiops_truncatus
ENSDARG00000039989	snrnp48	87	46.205	ENSUAMG00000003690	SNRNP48	81	45.583	Ursus_americanus
ENSDARG00000039989	snrnp48	77	45.455	ENSVPAG00000003557	SNRNP48	85	46.400	Vicugna_pacos
ENSDARG00000039989	snrnp48	87	46.865	ENSVVUG00000004996	SNRNP48	81	46.290	Vulpes_vulpes
ENSDARG00000039989	snrnp48	87	46.780	ENSXETG00000020447	snrnp48	80	46.667	Xenopus_tropicalis
ENSDARG00000039989	snrnp48	67	59.130	ENSXCOG00000004478	snrnp48	91	49.080	Xiphophorus_couchianus
ENSDARG00000039989	snrnp48	79	57.407	ENSXMAG00000013595	snrnp48	92	54.062	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component