EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000040214 (Gene tree)
Gene ID: 541533
Gene Symbol: scrt1b
Alias: zgc:113646
Full Name: scratch family zinc finger 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 2633 bases
Position: chr16:31186083-31188715
Accession: ZDB-GENE-050327-72
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000058828	zf-C2H2	PF00096.26	1.5e-25	1	4
ENSDARP00000058828	zf-C2H2	PF00096.26	1.5e-25	2	4
ENSDARP00000058828	zf-C2H2	PF00096.26	1.5e-25	3	4
ENSDARP00000058828	zf-C2H2	PF00096.26	1.5e-25	4	4
ENSDARP00000058828	zf-met	PF12874.7	6.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000058829	-	1833	-	ENSDARP00000058828	279 (aa)	-	F1R2G9

Gene Model

Click here to download ENSDARG00000040214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000040214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000040214	scrt1b	95	40.426	ENSDARG00000040046	snai2	98	40.426
ENSDARG00000040214	scrt1b	100	91.398	ENSDARG00000100821	scrt1a	100	91.398
ENSDARG00000040214	scrt1b	95	35.000	ENSDARG00000046019	snai1b	98	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000040214	scrt1b	97	69.928	ENSAPOG00000003680	scrt2	96	69.928	Acanthochromis_polyacanthus
ENSDARG00000040214	scrt1b	99	77.465	ENSAPOG00000015197	-	99	77.465	Acanthochromis_polyacanthus
ENSDARG00000040214	scrt1b	100	86.477	ENSAPOG00000009279	scrt1b	100	86.477	Acanthochromis_polyacanthus
ENSDARG00000040214	scrt1b	96	57.756	ENSACIG00000001296	-	96	57.756	Amphilophus_citrinellus
ENSDARG00000040214	scrt1b	100	83.333	ENSACIG00000013613	scrt1b	100	83.333	Amphilophus_citrinellus
ENSDARG00000040214	scrt1b	97	69.203	ENSACIG00000012604	scrt2	96	69.203	Amphilophus_citrinellus
ENSDARG00000040214	scrt1b	99	76.768	ENSACIG00000006586	-	99	76.768	Amphilophus_citrinellus
ENSDARG00000040214	scrt1b	97	69.928	ENSAOCG00000021557	scrt2	96	69.928	Amphiprion_ocellaris
ENSDARG00000040214	scrt1b	100	86.477	ENSAOCG00000003910	scrt1b	100	86.477	Amphiprion_ocellaris
ENSDARG00000040214	scrt1b	99	76.768	ENSAOCG00000023304	-	99	76.768	Amphiprion_ocellaris
ENSDARG00000040214	scrt1b	100	86.833	ENSAPEG00000000869	scrt1b	100	86.833	Amphiprion_percula
ENSDARG00000040214	scrt1b	97	69.928	ENSAPEG00000022558	scrt2	96	69.928	Amphiprion_percula
ENSDARG00000040214	scrt1b	99	76.768	ENSAPEG00000005677	-	99	76.768	Amphiprion_percula
ENSDARG00000040214	scrt1b	97	66.667	ENSATEG00000023998	scrt2	97	66.667	Anabas_testudineus
ENSDARG00000040214	scrt1b	100	86.833	ENSATEG00000002302	scrt1b	100	86.833	Anabas_testudineus
ENSDARG00000040214	scrt1b	99	78.521	ENSATEG00000011660	-	99	78.521	Anabas_testudineus
ENSDARG00000040214	scrt1b	96	54.952	ENSATEG00000003195	-	97	54.952	Anabas_testudineus
ENSDARG00000040214	scrt1b	77	76.636	ENSACAG00000016109	SCRT2	95	76.636	Anolis_carolinensis
ENSDARG00000040214	scrt1b	99	74.086	ENSACLG00000012046	-	99	74.086	Astatotilapia_calliptera
ENSDARG00000040214	scrt1b	100	86.121	ENSACLG00000007162	scrt1b	100	86.121	Astatotilapia_calliptera
ENSDARG00000040214	scrt1b	97	84.307	ENSAMXG00000042624	SCRT1	99	84.307	Astyanax_mexicanus
ENSDARG00000040214	scrt1b	88	70.312	ENSAMXG00000034158	scrt2	92	70.312	Astyanax_mexicanus
ENSDARG00000040214	scrt1b	100	87.814	ENSAMXG00000038085	scrt1a	100	87.814	Astyanax_mexicanus
ENSDARG00000040214	scrt1b	58	61.728	WBGene00000468	ces-1	60	60.976	Caenorhabditis_elegans
ENSDARG00000040214	scrt1b	99	86.691	ENSCPBG00000018899	SCRT1	99	86.691	Chrysemys_picta_bellii
ENSDARG00000040214	scrt1b	86	63.600	ENSCPBG00000027613	SCRT2	100	63.600	Chrysemys_picta_bellii
ENSDARG00000040214	scrt1b	88	49.393	ENSCGRG00000001380	Scrt2	100	49.393	Cricetulus_griseus_crigri
ENSDARG00000040214	scrt1b	100	86.121	ENSCSEG00000008596	scrt1b	100	86.121	Cynoglossus_semilaevis
ENSDARG00000040214	scrt1b	97	66.667	ENSCSEG00000021542	scrt2	97	67.327	Cynoglossus_semilaevis
ENSDARG00000040214	scrt1b	99	75.758	ENSCSEG00000014892	-	99	75.758	Cynoglossus_semilaevis
ENSDARG00000040214	scrt1b	99	77.517	ENSCVAG00000003190	-	99	77.517	Cyprinodon_variegatus
ENSDARG00000040214	scrt1b	100	86.477	ENSCVAG00000009561	scrt1b	100	86.477	Cyprinodon_variegatus
ENSDARG00000040214	scrt1b	97	65.372	ENSCVAG00000021038	scrt2	97	65.372	Cyprinodon_variegatus
ENSDARG00000040214	scrt1b	99	91.636	ENSELUG00000005435	scrt1b	98	91.636	Esox_lucius
ENSDARG00000040214	scrt1b	96	67.003	ENSELUG00000023883	scrt2	95	67.003	Esox_lucius
ENSDARG00000040214	scrt1b	99	89.928	ENSELUG00000022228	scrt1a	99	89.928	Esox_lucius
ENSDARG00000040214	scrt1b	83	72.103	ENSFALG00000005718	SCRT2	97	72.103	Ficedula_albicollis
ENSDARG00000040214	scrt1b	96	63.941	ENSFDAG00000008733	SCRT1	97	63.941	Fukomys_damarensis
ENSDARG00000040214	scrt1b	100	86.477	ENSFHEG00000014820	scrt1b	100	86.477	Fundulus_heteroclitus
ENSDARG00000040214	scrt1b	97	72.101	ENSFHEG00000005732	scrt2	96	72.101	Fundulus_heteroclitus
ENSDARG00000040214	scrt1b	99	75.839	ENSFHEG00000009794	-	99	75.839	Fundulus_heteroclitus
ENSDARG00000040214	scrt1b	57	94.355	ENSGMOG00000013833	-	54	94.355	Gadus_morhua
ENSDARG00000040214	scrt1b	97	60.841	ENSGMOG00000019519	scrt2	96	60.841	Gadus_morhua
ENSDARG00000040214	scrt1b	99	83.929	ENSGMOG00000000629	scrt1b	100	83.929	Gadus_morhua
ENSDARG00000040214	scrt1b	97	64.835	ENSGALG00000028912	SCRT2	97	64.748	Gallus_gallus
ENSDARG00000040214	scrt1b	97	67.003	ENSGAFG00000003093	scrt2	97	67.003	Gambusia_affinis
ENSDARG00000040214	scrt1b	99	76.678	ENSGAFG00000009650	-	99	76.678	Gambusia_affinis
ENSDARG00000040214	scrt1b	100	86.477	ENSGAFG00000007636	scrt1b	100	86.477	Gambusia_affinis
ENSDARG00000040214	scrt1b	99	83.513	ENSGACG00000008982	scrt1b	99	83.513	Gasterosteus_aculeatus
ENSDARG00000040214	scrt1b	99	75.170	ENSGACG00000004072	-	99	75.170	Gasterosteus_aculeatus
ENSDARG00000040214	scrt1b	63	82.386	ENSGAGG00000020760	-	68	82.386	Gopherus_agassizii
ENSDARG00000040214	scrt1b	96	65.217	ENSGAGG00000020761	SCRT2	96	65.217	Gopherus_agassizii
ENSDARG00000040214	scrt1b	99	88.000	ENSGAGG00000011736	SCRT1	99	88.000	Gopherus_agassizii
ENSDARG00000040214	scrt1b	100	86.121	ENSHBUG00000016621	scrt1b	100	86.121	Haplochromis_burtoni
ENSDARG00000040214	scrt1b	99	76.094	ENSHBUG00000019101	-	99	76.094	Haplochromis_burtoni
ENSDARG00000040214	scrt1b	97	69.928	ENSHBUG00000012492	scrt2	96	69.928	Haplochromis_burtoni
ENSDARG00000040214	scrt1b	97	68.601	ENSHCOG00000008116	scrt2	97	68.601	Hippocampus_comes
ENSDARG00000040214	scrt1b	99	71.034	ENSHCOG00000016179	-	99	71.379	Hippocampus_comes
ENSDARG00000040214	scrt1b	100	85.053	ENSHCOG00000016704	scrt1b	100	85.053	Hippocampus_comes
ENSDARG00000040214	scrt1b	98	88.364	ENSIPUG00000004551	scrt1a	98	88.364	Ictalurus_punctatus
ENSDARG00000040214	scrt1b	98	79.121	ENSIPUG00000005547	-	99	79.121	Ictalurus_punctatus
ENSDARG00000040214	scrt1b	51	83.688	ENSSTOG00000032944	SCRT2	78	82.877	Ictidomys_tridecemlineatus
ENSDARG00000040214	scrt1b	97	66.667	ENSKMAG00000018087	scrt2	97	66.667	Kryptolebias_marmoratus
ENSDARG00000040214	scrt1b	99	74.497	ENSKMAG00000009489	-	99	76.174	Kryptolebias_marmoratus
ENSDARG00000040214	scrt1b	100	86.477	ENSKMAG00000005484	scrt1b	100	86.477	Kryptolebias_marmoratus
ENSDARG00000040214	scrt1b	99	75.084	ENSLBEG00000023388	-	99	75.758	Labrus_bergylta
ENSDARG00000040214	scrt1b	97	65.484	ENSLBEG00000015419	scrt2	97	65.806	Labrus_bergylta
ENSDARG00000040214	scrt1b	100	87.814	ENSLACG00000003588	SCRT1	99	87.814	Latimeria_chalumnae
ENSDARG00000040214	scrt1b	100	92.473	ENSLOCG00000007573	scrt1b	100	92.473	Lepisosteus_oculatus
ENSDARG00000040214	scrt1b	97	55.663	ENSLOCG00000002246	scrt2	97	55.663	Lepisosteus_oculatus
ENSDARG00000040214	scrt1b	96	92.593	ENSMFAG00000035496	SCRT1	92	58.364	Macaca_fascicularis
ENSDARG00000040214	scrt1b	100	85.765	ENSMAMG00000011698	scrt1b	100	85.765	Mastacembelus_armatus
ENSDARG00000040214	scrt1b	97	65.696	ENSMAMG00000001291	scrt2	97	66.019	Mastacembelus_armatus
ENSDARG00000040214	scrt1b	97	69.928	ENSMZEG00005026445	scrt2	96	69.928	Maylandia_zebra
ENSDARG00000040214	scrt1b	100	86.121	ENSMZEG00005005627	scrt1b	100	86.121	Maylandia_zebra
ENSDARG00000040214	scrt1b	99	76.094	ENSMZEG00005026702	-	99	76.094	Maylandia_zebra
ENSDARG00000040214	scrt1b	83	70.690	ENSMGAG00000016579	SCRT2	97	70.690	Meleagris_gallopavo
ENSDARG00000040214	scrt1b	97	66.340	ENSMMOG00000009272	scrt2	97	67.320	Mola_mola
ENSDARG00000040214	scrt1b	100	84.342	ENSMMOG00000003327	scrt1b	100	84.342	Mola_mola
ENSDARG00000040214	scrt1b	99	76.768	ENSMMOG00000018345	-	99	76.768	Mola_mola
ENSDARG00000040214	scrt1b	97	69.065	ENSMALG00000013656	scrt2	96	69.065	Monopterus_albus
ENSDARG00000040214	scrt1b	100	86.121	ENSMALG00000012704	scrt1b	100	86.121	Monopterus_albus
ENSDARG00000040214	scrt1b	51	83.688	ENSNGAG00000020815	Scrt2	71	82.192	Nannospalax_galili
ENSDARG00000040214	scrt1b	100	82.562	ENSNBRG00000013983	scrt1b	100	82.562	Neolamprologus_brichardi
ENSDARG00000040214	scrt1b	99	76.431	ENSNBRG00000014882	-	99	76.431	Neolamprologus_brichardi
ENSDARG00000040214	scrt1b	97	69.565	ENSNBRG00000007221	scrt2	96	69.565	Neolamprologus_brichardi
ENSDARG00000040214	scrt1b	97	72.459	ENSONIG00000019809	-	100	72.459	Oreochromis_niloticus
ENSDARG00000040214	scrt1b	97	65.696	ENSONIG00000016758	scrt2	97	66.019	Oreochromis_niloticus
ENSDARG00000040214	scrt1b	96	61.594	ENSONIG00000003152	-	96	61.594	Oreochromis_niloticus
ENSDARG00000040214	scrt1b	100	85.409	ENSONIG00000006007	scrt1b	100	85.409	Oreochromis_niloticus
ENSDARG00000040214	scrt1b	99	75.000	ENSORLG00000022825	-	99	75.000	Oryzias_latipes
ENSDARG00000040214	scrt1b	100	86.477	ENSORLG00000025651	scrt1b	100	86.477	Oryzias_latipes
ENSDARG00000040214	scrt1b	97	66.667	ENSORLG00000024051	scrt2	97	66.667	Oryzias_latipes
ENSDARG00000040214	scrt1b	97	66.667	ENSORLG00020011478	scrt2	97	66.667	Oryzias_latipes_hni
ENSDARG00000040214	scrt1b	100	86.477	ENSORLG00020012967	scrt1b	100	86.477	Oryzias_latipes_hni
ENSDARG00000040214	scrt1b	99	74.333	ENSORLG00015010104	-	99	74.333	Oryzias_latipes_hsok
ENSDARG00000040214	scrt1b	100	86.477	ENSORLG00015019165	scrt1b	100	86.477	Oryzias_latipes_hsok
ENSDARG00000040214	scrt1b	97	66.667	ENSORLG00015005524	scrt2	97	66.667	Oryzias_latipes_hsok
ENSDARG00000040214	scrt1b	99	76.689	ENSOMEG00000000286	-	99	76.689	Oryzias_melastigma
ENSDARG00000040214	scrt1b	97	66.667	ENSOMEG00000002661	scrt2	97	66.667	Oryzias_melastigma
ENSDARG00000040214	scrt1b	100	86.477	ENSOMEG00000003925	scrt1b	100	86.477	Oryzias_melastigma
ENSDARG00000040214	scrt1b	100	88.889	ENSPKIG00000022303	SCRT1	100	88.889	Paramormyrops_kingsleyae
ENSDARG00000040214	scrt1b	100	90.323	ENSPKIG00000020085	scrt1a	100	90.323	Paramormyrops_kingsleyae
ENSDARG00000040214	scrt1b	97	73.188	ENSPMGG00000016561	scrt2	96	73.188	Periophthalmus_magnuspinnatus
ENSDARG00000040214	scrt1b	100	83.571	ENSPMGG00000002260	scrt1b	100	83.571	Periophthalmus_magnuspinnatus
ENSDARG00000040214	scrt1b	99	76.190	ENSPMGG00000021402	-	99	76.190	Periophthalmus_magnuspinnatus
ENSDARG00000040214	scrt1b	99	76.094	ENSPFOG00000005616	-	99	76.094	Poecilia_formosa
ENSDARG00000040214	scrt1b	97	65.696	ENSPFOG00000007738	scrt2	97	65.696	Poecilia_formosa
ENSDARG00000040214	scrt1b	100	86.477	ENSPFOG00000017719	scrt1b	100	86.477	Poecilia_formosa
ENSDARG00000040214	scrt1b	97	71.942	ENSPLAG00000005765	scrt2	96	71.942	Poecilia_latipinna
ENSDARG00000040214	scrt1b	100	86.477	ENSPLAG00000009876	scrt1b	100	86.477	Poecilia_latipinna
ENSDARG00000040214	scrt1b	99	76.094	ENSPLAG00000011718	-	99	76.094	Poecilia_latipinna
ENSDARG00000040214	scrt1b	100	86.477	ENSPMEG00000013274	scrt1b	100	86.477	Poecilia_mexicana
ENSDARG00000040214	scrt1b	97	71.942	ENSPMEG00000001538	scrt2	96	71.942	Poecilia_mexicana
ENSDARG00000040214	scrt1b	99	76.094	ENSPMEG00000011706	-	99	76.094	Poecilia_mexicana
ENSDARG00000040214	scrt1b	97	65.696	ENSPREG00000001147	scrt2	97	65.696	Poecilia_reticulata
ENSDARG00000040214	scrt1b	99	75.758	ENSPREG00000012166	-	99	75.758	Poecilia_reticulata
ENSDARG00000040214	scrt1b	100	86.477	ENSPREG00000018985	scrt1b	100	86.477	Poecilia_reticulata
ENSDARG00000040214	scrt1b	97	69.928	ENSPNYG00000013109	scrt2	96	69.928	Pundamilia_nyererei
ENSDARG00000040214	scrt1b	100	86.121	ENSPNYG00000017733	scrt1b	100	86.121	Pundamilia_nyererei
ENSDARG00000040214	scrt1b	99	76.094	ENSPNYG00000008865	-	99	76.094	Pundamilia_nyererei
ENSDARG00000040214	scrt1b	97	86.081	ENSPNAG00000027880	-	99	86.081	Pygocentrus_nattereri
ENSDARG00000040214	scrt1b	100	88.889	ENSPNAG00000017415	scrt1a	100	88.889	Pygocentrus_nattereri
ENSDARG00000040214	scrt1b	100	86.380	ENSSFOG00015001195	SCRT1	100	86.380	Scleropages_formosus
ENSDARG00000040214	scrt1b	99	74.000	ENSSMAG00000005122	-	99	74.000	Scophthalmus_maximus
ENSDARG00000040214	scrt1b	98	86.182	ENSSMAG00000019207	scrt1b	98	86.182	Scophthalmus_maximus
ENSDARG00000040214	scrt1b	99	77.517	ENSSDUG00000013215	-	99	77.517	Seriola_dumerili
ENSDARG00000040214	scrt1b	100	86.477	ENSSDUG00000007752	scrt1b	100	86.477	Seriola_dumerili
ENSDARG00000040214	scrt1b	98	66.667	ENSSDUG00000001637	scrt2	96	67.003	Seriola_dumerili
ENSDARG00000040214	scrt1b	97	65.696	ENSSLDG00000013565	scrt2	97	66.019	Seriola_lalandi_dorsalis
ENSDARG00000040214	scrt1b	99	77.517	ENSSLDG00000016454	-	99	77.517	Seriola_lalandi_dorsalis
ENSDARG00000040214	scrt1b	100	86.477	ENSSLDG00000017166	scrt1b	100	86.477	Seriola_lalandi_dorsalis
ENSDARG00000040214	scrt1b	97	66.421	ENSSPUG00000018637	SCRT2	97	66.421	Sphenodon_punctatus
ENSDARG00000040214	scrt1b	99	75.758	ENSSPAG00000006788	-	99	76.846	Stegastes_partitus
ENSDARG00000040214	scrt1b	97	70.290	ENSSPAG00000014018	scrt2	96	70.290	Stegastes_partitus
ENSDARG00000040214	scrt1b	100	86.477	ENSSPAG00000002200	scrt1b	100	86.477	Stegastes_partitus
ENSDARG00000040214	scrt1b	83	71.983	ENSTGUG00000006801	SCRT2	99	71.983	Taeniopygia_guttata
ENSDARG00000040214	scrt1b	97	68.729	ENSTRUG00000007620	scrt2	97	68.729	Takifugu_rubripes
ENSDARG00000040214	scrt1b	98	85.818	ENSTRUG00000011637	scrt1b	99	85.818	Takifugu_rubripes
ENSDARG00000040214	scrt1b	86	76.543	ENSTRUG00000019558	-	81	76.543	Takifugu_rubripes
ENSDARG00000040214	scrt1b	99	75.676	ENSTRUG00000012719	-	99	75.676	Takifugu_rubripes
ENSDARG00000040214	scrt1b	97	72.043	ENSTNIG00000012473	scrt2	97	72.043	Tetraodon_nigroviridis
ENSDARG00000040214	scrt1b	100	85.053	ENSTNIG00000018384	scrt1b	100	85.053	Tetraodon_nigroviridis
ENSDARG00000040214	scrt1b	99	75.618	ENSXCOG00000019861	-	99	75.618	Xiphophorus_couchianus
ENSDARG00000040214	scrt1b	97	67.340	ENSXCOG00000014367	scrt2	97	67.340	Xiphophorus_couchianus
ENSDARG00000040214	scrt1b	100	86.477	ENSXCOG00000019675	scrt1b	100	86.477	Xiphophorus_couchianus
ENSDARG00000040214	scrt1b	97	66.019	ENSXMAG00000028567	scrt2	97	66.019	Xiphophorus_maculatus
ENSDARG00000040214	scrt1b	99	75.421	ENSXMAG00000015353	-	99	75.421	Xiphophorus_maculatus
ENSDARG00000040214	scrt1b	100	86.477	ENSXMAG00000027885	scrt1b	100	86.477	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function