EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000040881 (Gene tree)
Gene ID: 402984
Gene Symbol: hnrnph1
Alias: zgc:77712
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 23447 bases
Position: chr14:6991142-7014588
Accession: ZDB-GENE-040426-1856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000141886	zf-RNPHF	PF08080.12	1.5e-06	1	1
ENSDARP00000059917	zf-RNPHF	PF08080.12	1.6e-06	1	1
ENSDARP00000059917	RRM_1	PF00076.22	8e-33	1	3
ENSDARP00000059917	RRM_1	PF00076.22	8e-33	2	3
ENSDARP00000059917	RRM_1	PF00076.22	8e-33	3	3
ENSDARP00000141886	RRM_1	PF00076.22	8.3e-33	1	3
ENSDARP00000141886	RRM_1	PF00076.22	8.3e-33	2	3
ENSDARP00000141886	RRM_1	PF00076.22	8.3e-33	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000157635	-	1956	XM_005169579	ENSDARP00000141886	402 (aa)	XP_005169636	A0A0R4IZE3
ENSDART00000059918	-	2011	XM_005169582	ENSDARP00000059917	403 (aa)	XP_005169639	Q6P0V0

Gene Model

Click here to download ENSDARG00000040881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000040881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000040881	hnrnph1	94	58.649	ENSDARG00000039466	hnrnph3	97	61.417
ENSDARG00000040881	hnrnph1	97	88.010	ENSDARG00000005551	hnrnph1l	100	85.258
ENSDARG00000040881	hnrnph1	80	38.318	ENSDARG00000053021	grsf1	70	38.318
ENSDARG00000040881	hnrnph1	89	30.027	ENSDARG00000018814	esrp2	68	31.548

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000040881	hnrnph1	94	88.482	ENSAPOG00000016614	hnrnph1	93	88.158	Acanthochromis_polyacanthus
ENSDARG00000040881	hnrnph1	94	88.391	ENSACIG00000008964	hnrnph1	99	87.728	Amphilophus_citrinellus
ENSDARG00000040881	hnrnph1	94	88.684	ENSAOCG00000008372	hnrnph1	93	88.158	Amphiprion_ocellaris
ENSDARG00000040881	hnrnph1	94	88.947	ENSAPEG00000012980	hnrnph1	93	88.421	Amphiprion_percula
ENSDARG00000040881	hnrnph1	94	88.421	ENSATEG00000002792	hnrnph1	93	87.895	Anabas_testudineus
ENSDARG00000040881	hnrnph1	99	71.272	ENSACAG00000016323	-	91	72.967	Anolis_carolinensis
ENSDARG00000040881	hnrnph1	95	87.151	ENSACLG00000003313	hnrnph1	93	87.135	Astatotilapia_calliptera
ENSDARG00000040881	hnrnph1	100	90.754	ENSAMXG00000002483	hnrnph1	100	95.263	Astyanax_mexicanus
ENSDARG00000040881	hnrnph1	99	83.538	ENSAMXG00000030703	hnrnph1l	85	82.310	Astyanax_mexicanus
ENSDARG00000040881	hnrnph1	94	89.474	ENSCSEG00000015891	hnrnph1	92	88.684	Cynoglossus_semilaevis
ENSDARG00000040881	hnrnph1	94	87.632	ENSCVAG00000014097	hnrnph1	93	87.105	Cyprinodon_variegatus
ENSDARG00000040881	hnrnph1	94	85.752	ENSELUG00000021437	-	99	88.127	Esox_lucius
ENSDARG00000040881	hnrnph1	100	82.143	ENSELUG00000006715	hnrnph1	94	83.929	Esox_lucius
ENSDARG00000040881	hnrnph1	100	86.700	ENSFHEG00000008474	hnrnph1	100	84.483	Fundulus_heteroclitus
ENSDARG00000040881	hnrnph1	95	82.793	ENSGMOG00000006782	hnrnph1	99	81.297	Gadus_morhua
ENSDARG00000040881	hnrnph1	94	87.632	ENSGAFG00000006280	hnrnph1	93	86.842	Gambusia_affinis
ENSDARG00000040881	hnrnph1	96	88.953	ENSGACG00000018352	hnrnph1	94	86.968	Gasterosteus_aculeatus
ENSDARG00000040881	hnrnph1	95	87.151	ENSHBUG00000010547	hnrnph1	94	87.135	Haplochromis_burtoni
ENSDARG00000040881	hnrnph1	94	78.626	ENSHCOG00000004513	hnrnph1	93	77.608	Hippocampus_comes
ENSDARG00000040881	hnrnph1	100	87.835	ENSIPUG00000018262	hnrnph1	100	89.976	Ictalurus_punctatus
ENSDARG00000040881	hnrnph1	97	84.184	ENSIPUG00000024047	hnrnph1l	95	85.224	Ictalurus_punctatus
ENSDARG00000040881	hnrnph1	96	86.352	ENSKMAG00000018802	hnrnph1	93	86.387	Kryptolebias_marmoratus
ENSDARG00000040881	hnrnph1	94	88.684	ENSLBEG00000027811	hnrnph1	93	88.158	Labrus_bergylta
ENSDARG00000040881	hnrnph1	95	81.327	ENSLOCG00000012510	hnrnph1	92	80.344	Lepisosteus_oculatus
ENSDARG00000040881	hnrnph1	99	53.810	ENSMMUG00000017392	-	88	52.972	Macaca_mulatta
ENSDARG00000040881	hnrnph1	99	53.810	ENSMNEG00000030544	-	88	52.972	Macaca_nemestrina
ENSDARG00000040881	hnrnph1	98	84.182	ENSMAMG00000011478	hnrnph1	94	84.943	Mastacembelus_armatus
ENSDARG00000040881	hnrnph1	94	88.684	ENSMZEG00005009791	hnrnph1	93	88.158	Maylandia_zebra
ENSDARG00000040881	hnrnph1	94	86.423	ENSMMOG00000009064	hnrnph1	99	85.825	Mola_mola
ENSDARG00000040881	hnrnph1	74	53.153	ENSMODG00000002200	-	99	50.150	Monodelphis_domestica
ENSDARG00000040881	hnrnph1	94	86.981	ENSMALG00000003999	hnrnph1	95	86.087	Monopterus_albus
ENSDARG00000040881	hnrnph1	95	87.151	ENSNBRG00000015406	hnrnph1	94	87.135	Neolamprologus_brichardi
ENSDARG00000040881	hnrnph1	94	88.421	ENSONIG00000017754	hnrnph1	93	87.895	Oreochromis_niloticus
ENSDARG00000040881	hnrnph1	94	87.047	ENSORLG00000006932	hnrnph1	93	86.010	Oryzias_latipes
ENSDARG00000040881	hnrnph1	94	87.047	ENSORLG00020007881	hnrnph1	93	85.751	Oryzias_latipes_hni
ENSDARG00000040881	hnrnph1	94	87.047	ENSORLG00015005306	hnrnph1	93	86.010	Oryzias_latipes_hsok
ENSDARG00000040881	hnrnph1	94	87.664	ENSOMEG00000009827	hnrnph1	99	87.071	Oryzias_melastigma
ENSDARG00000040881	hnrnph1	94	83.085	ENSPKIG00000009532	-	100	79.493	Paramormyrops_kingsleyae
ENSDARG00000040881	hnrnph1	100	88.725	ENSPKIG00000018203	hnrnph1l	100	87.224	Paramormyrops_kingsleyae
ENSDARG00000040881	hnrnph1	94	86.579	ENSPMGG00000012151	hnrnph1	94	85.526	Periophthalmus_magnuspinnatus
ENSDARG00000040881	hnrnph1	100	83.374	ENSPFOG00000004097	hnrnph1	100	82.885	Poecilia_formosa
ENSDARG00000040881	hnrnph1	94	87.632	ENSPLAG00000011771	hnrnph1	93	87.105	Poecilia_latipinna
ENSDARG00000040881	hnrnph1	94	87.895	ENSPMEG00000019446	hnrnph1	93	87.368	Poecilia_mexicana
ENSDARG00000040881	hnrnph1	94	87.895	ENSPREG00000005780	hnrnph1	93	87.105	Poecilia_reticulata
ENSDARG00000040881	hnrnph1	94	88.684	ENSPNYG00000000204	hnrnph1	93	88.158	Pundamilia_nyererei
ENSDARG00000040881	hnrnph1	100	85.680	ENSPNAG00000002784	hnrnph1l	98	87.863	Pygocentrus_nattereri
ENSDARG00000040881	hnrnph1	100	91.241	ENSPNAG00000000439	hnrnph1	100	93.888	Pygocentrus_nattereri
ENSDARG00000040881	hnrnph1	98	88.665	ENSSFOG00015022796	hnrnph1l	100	86.649	Scleropages_formosus
ENSDARG00000040881	hnrnph1	99	86.783	ENSSFOG00015016055	-	94	89.474	Scleropages_formosus
ENSDARG00000040881	hnrnph1	95	85.455	ENSSMAG00000007820	hnrnph1	98	85.347	Scophthalmus_maximus
ENSDARG00000040881	hnrnph1	94	88.684	ENSSDUG00000008785	hnrnph1	93	88.158	Seriola_dumerili
ENSDARG00000040881	hnrnph1	94	88.684	ENSSLDG00000010685	hnrnph1	93	88.158	Seriola_lalandi_dorsalis
ENSDARG00000040881	hnrnph1	100	85.610	ENSSPAG00000009921	hnrnph1	93	87.895	Stegastes_partitus
ENSDARG00000040881	hnrnph1	94	88.594	ENSTRUG00000020069	hnrnph1	93	88.594	Takifugu_rubripes
ENSDARG00000040881	hnrnph1	99	74.533	ENSXETG00000018321	hnrnph1	92	74.065	Xenopus_tropicalis
ENSDARG00000040881	hnrnph1	94	84.635	ENSXCOG00000009133	hnrnph1	98	82.957	Xiphophorus_couchianus
ENSDARG00000040881	hnrnph1	95	88.021	ENSXMAG00000021332	hnrnph1	100	87.240	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component