EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000040959 (Gene tree)
Gene ID: 403048
Gene Symbol: rabl3
Alias: fb40b02|wu:fb40b02|zgc:100876
Full Name: RAB%2C member of RAS oncogene family-like 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 34981 bases
Position: chr9:32635546-32670526
Accession: ZDB-GENE-040808-11
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000115081	MMR_HSR1	PF01926.23	2.1e-05	1	1
ENSDARP00000133137	MMR_HSR1	PF01926.23	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000136136	-	1321	-	ENSDARP00000115081	233 (aa)	-	Q6TNS7
ENSDART00000189909	-	342	-	ENSDARP00000156913	114 (aa)	-	A0A2R8QQA0
ENSDART00000134743	-	517	-	-	- (aa)	-	-
ENSDART00000144535	-	663	-	-	- (aa)	-	-
ENSDART00000123466	-	916	-	ENSDARP00000110347	137 (aa)	-	G1K2X3
ENSDART00000172033	-	1258	-	ENSDARP00000133137	233 (aa)	-	Q6TNS7

Gene Model

Click here to download ENSDARG00000040959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000040959's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000040959	rabl3	88	30.000	ENSDARG00000102078	CABZ01072548.1	57	30.000
ENSDARG00000040959	rabl3	88	30.000	ENSDARG00000058425	rab35b	55	30.000
ENSDARG00000040959	rabl3	88	30.000	ENSDARG00000037967	si:dkey-16l2.16	78	31.373
ENSDARG00000040959	rabl3	94	30.233	ENSDARG00000015807	rab22a	60	30.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000040959	rabl3	99	87.407	ENSG00000144840	RABL3	100	90.698	Homo_sapiens
ENSDARG00000040959	rabl3	100	94.017	ENSAPOG00000024479	rabl3	100	94.017	Acanthochromis_polyacanthus
ENSDARG00000040959	rabl3	93	92.188	ENSAMEG00000004809	RABL3	100	84.322	Ailuropoda_melanoleuca
ENSDARG00000040959	rabl3	100	89.270	ENSACIG00000014343	rabl3	100	89.270	Amphilophus_citrinellus
ENSDARG00000040959	rabl3	100	94.017	ENSAOCG00000011851	rabl3	100	94.017	Amphiprion_ocellaris
ENSDARG00000040959	rabl3	100	94.017	ENSAPEG00000011214	rabl3	100	94.017	Amphiprion_percula
ENSDARG00000040959	rabl3	100	93.991	ENSATEG00000003503	rabl3	100	93.991	Anabas_testudineus
ENSDARG00000040959	rabl3	99	80.342	ENSACAG00000011313	-	99	80.342	Anolis_carolinensis
ENSDARG00000040959	rabl3	93	92.969	ENSANAG00000027278	RABL3	100	85.593	Aotus_nancymaae
ENSDARG00000040959	rabl3	100	93.562	ENSACLG00000009820	rabl3	100	93.562	Astatotilapia_calliptera
ENSDARG00000040959	rabl3	100	91.845	ENSAMXG00000038716	rabl3	100	91.845	Astyanax_mexicanus
ENSDARG00000040959	rabl3	100	86.017	ENSBTAG00000015898	RABL3	100	86.017	Bos_taurus
ENSDARG00000040959	rabl3	93	92.969	ENSCJAG00000008611	RABL3	100	85.593	Callithrix_jacchus
ENSDARG00000040959	rabl3	93	92.188	ENSCAFG00000011292	RABL3	89	85.169	Canis_familiaris
ENSDARG00000040959	rabl3	93	92.188	ENSCAFG00020006397	RABL3	100	85.169	Canis_lupus_dingo
ENSDARG00000040959	rabl3	100	86.017	ENSCHIG00000017365	RABL3	100	86.017	Capra_hircus
ENSDARG00000040959	rabl3	93	91.406	ENSCPOG00000009645	RABL3	100	83.898	Cavia_porcellus
ENSDARG00000040959	rabl3	100	83.898	ENSCATG00000032561	RABL3	100	83.898	Cercocebus_atys
ENSDARG00000040959	rabl3	93	91.406	ENSCLAG00000010855	RABL3	100	83.475	Chinchilla_lanigera
ENSDARG00000040959	rabl3	99	83.691	ENSCSAG00000007155	RABL3	100	83.691	Chlorocebus_sabaeus
ENSDARG00000040959	rabl3	100	84.746	ENSCPBG00000001999	RABL3	100	84.746	Chrysemys_picta_bellii
ENSDARG00000040959	rabl3	100	83.898	ENSCANG00000031684	RABL3	100	83.898	Colobus_angolensis_palliatus
ENSDARG00000040959	rabl3	93	89.844	ENSCGRG00001021537	Rabl3	100	81.356	Cricetulus_griseus_chok1gshd
ENSDARG00000040959	rabl3	93	89.844	ENSCGRG00000002114	Rabl3	100	81.356	Cricetulus_griseus_crigri
ENSDARG00000040959	rabl3	93	92.969	ENSCSEG00000014982	rabl3	100	80.258	Cynoglossus_semilaevis
ENSDARG00000040959	rabl3	93	92.969	ENSCVAG00000009904	rabl3	100	76.824	Cyprinodon_variegatus
ENSDARG00000040959	rabl3	93	91.406	ENSDNOG00000008174	RABL3	100	83.898	Dasypus_novemcinctus
ENSDARG00000040959	rabl3	93	91.406	ENSETEG00000010206	RABL3	100	84.322	Echinops_telfairi
ENSDARG00000040959	rabl3	100	85.593	ENSECAG00000023059	RABL3	100	85.593	Equus_caballus
ENSDARG00000040959	rabl3	93	89.844	ENSEEUG00000002897	RABL3	100	79.237	Erinaceus_europaeus
ENSDARG00000040959	rabl3	100	91.416	ENSELUG00000014758	rabl3	100	91.416	Esox_lucius
ENSDARG00000040959	rabl3	93	92.188	ENSFCAG00000031879	RABL3	100	75.000	Felis_catus
ENSDARG00000040959	rabl3	100	82.627	ENSFALG00000005296	RABL3	100	82.627	Ficedula_albicollis
ENSDARG00000040959	rabl3	100	84.255	ENSFDAG00000000307	RABL3	100	84.255	Fukomys_damarensis
ENSDARG00000040959	rabl3	100	90.987	ENSFHEG00000011273	rabl3	100	90.987	Fundulus_heteroclitus
ENSDARG00000040959	rabl3	100	91.416	ENSGMOG00000007845	rabl3	100	91.416	Gadus_morhua
ENSDARG00000040959	rabl3	100	83.898	ENSGALG00000014949	RABL3	100	83.898	Gallus_gallus
ENSDARG00000040959	rabl3	100	89.270	ENSGAFG00000015953	rabl3	100	89.270	Gambusia_affinis
ENSDARG00000040959	rabl3	100	90.987	ENSGACG00000007387	rabl3	100	93.023	Gasterosteus_aculeatus
ENSDARG00000040959	rabl3	100	85.169	ENSGAGG00000003677	RABL3	100	85.169	Gopherus_agassizii
ENSDARG00000040959	rabl3	93	90.625	ENSGGOG00000006059	RABL3	100	83.475	Gorilla_gorilla
ENSDARG00000040959	rabl3	100	93.991	ENSHBUG00000019478	rabl3	93	93.991	Haplochromis_burtoni
ENSDARG00000040959	rabl3	100	84.255	ENSHGLG00000014491	RABL3	100	84.255	Heterocephalus_glaber_female
ENSDARG00000040959	rabl3	100	84.255	ENSHGLG00100004866	RABL3	100	84.255	Heterocephalus_glaber_male
ENSDARG00000040959	rabl3	93	94.531	ENSHCOG00000019245	rabl3	100	78.112	Hippocampus_comes
ENSDARG00000040959	rabl3	100	91.416	ENSIPUG00000012657	rabl3	100	91.416	Ictalurus_punctatus
ENSDARG00000040959	rabl3	93	91.406	ENSSTOG00000019452	RABL3	100	83.475	Ictidomys_tridecemlineatus
ENSDARG00000040959	rabl3	93	90.625	ENSJJAG00000023553	Rabl3	100	73.729	Jaculus_jaculus
ENSDARG00000040959	rabl3	100	89.270	ENSKMAG00000015464	rabl3	100	89.270	Kryptolebias_marmoratus
ENSDARG00000040959	rabl3	100	92.735	ENSLBEG00000010627	-	100	92.735	Labrus_bergylta
ENSDARG00000040959	rabl3	100	92.735	ENSLBEG00000020595	rabl3	100	92.735	Labrus_bergylta
ENSDARG00000040959	rabl3	100	87.288	ENSLOCG00000006265	rabl3	100	87.288	Lepisosteus_oculatus
ENSDARG00000040959	rabl3	93	92.188	ENSLAFG00000003711	RABL3	100	84.746	Loxodonta_africana
ENSDARG00000040959	rabl3	100	83.898	ENSMFAG00000031923	RABL3	100	83.898	Macaca_fascicularis
ENSDARG00000040959	rabl3	93	90.625	ENSMMUG00000001594	RABL3	100	73.729	Macaca_mulatta
ENSDARG00000040959	rabl3	100	83.898	ENSMNEG00000043980	RABL3	100	83.898	Macaca_nemestrina
ENSDARG00000040959	rabl3	100	83.898	ENSMLEG00000028177	RABL3	100	83.898	Mandrillus_leucophaeus
ENSDARG00000040959	rabl3	100	92.704	ENSMAMG00000015155	rabl3	100	92.704	Mastacembelus_armatus
ENSDARG00000040959	rabl3	100	93.562	ENSMZEG00005002607	rabl3	100	93.562	Maylandia_zebra
ENSDARG00000040959	rabl3	93	89.844	ENSMAUG00000013022	Rabl3	100	81.356	Mesocricetus_auratus
ENSDARG00000040959	rabl3	100	84.746	ENSMICG00000049288	RABL3	100	84.746	Microcebus_murinus
ENSDARG00000040959	rabl3	93	88.281	ENSMOCG00000015237	Rabl3	100	80.932	Microtus_ochrogaster
ENSDARG00000040959	rabl3	100	88.936	ENSMMOG00000005628	rabl3	100	88.936	Mola_mola
ENSDARG00000040959	rabl3	100	85.169	ENSMODG00000018232	RABL3	100	85.169	Monodelphis_domestica
ENSDARG00000040959	rabl3	100	86.864	ENSMALG00000018837	rabl3	100	86.864	Monopterus_albus
ENSDARG00000040959	rabl3	93	89.844	MGP_CAROLIEiJ_G0020728	Rabl3	100	89.922	Mus_caroli
ENSDARG00000040959	rabl3	93	89.844	ENSMUSG00000022827	Rabl3	100	89.922	Mus_musculus
ENSDARG00000040959	rabl3	93	89.844	MGP_PahariEiJ_G0016429	Rabl3	100	89.922	Mus_pahari
ENSDARG00000040959	rabl3	93	89.844	MGP_SPRETEiJ_G0021628	Rabl3	100	89.922	Mus_spretus
ENSDARG00000040959	rabl3	93	92.188	ENSMPUG00000008257	RABL3	89	85.169	Mustela_putorius_furo
ENSDARG00000040959	rabl3	100	84.322	ENSMLUG00000014113	RABL3	100	84.322	Myotis_lucifugus
ENSDARG00000040959	rabl3	93	90.625	ENSNGAG00000001939	Rabl3	99	74.348	Nannospalax_galili
ENSDARG00000040959	rabl3	93	96.094	ENSNBRG00000012423	rabl3	92	95.370	Neolamprologus_brichardi
ENSDARG00000040959	rabl3	93	90.625	ENSNLEG00000031723	RABL3	100	83.475	Nomascus_leucogenys
ENSDARG00000040959	rabl3	100	83.475	ENSMEUG00000006606	RABL3	100	83.475	Notamacropus_eugenii
ENSDARG00000040959	rabl3	93	91.406	ENSODEG00000004758	-	100	83.475	Octodon_degus
ENSDARG00000040959	rabl3	100	94.421	ENSONIG00000004281	rabl3	100	94.421	Oreochromis_niloticus
ENSDARG00000040959	rabl3	99	82.906	ENSOANG00000003928	RABL3	99	82.906	Ornithorhynchus_anatinus
ENSDARG00000040959	rabl3	100	92.275	ENSORLG00000020457	rabl3	100	92.275	Oryzias_latipes
ENSDARG00000040959	rabl3	100	92.275	ENSORLG00020008991	rabl3	100	87.554	Oryzias_latipes_hni
ENSDARG00000040959	rabl3	100	92.275	ENSORLG00015005649	rabl3	88	92.275	Oryzias_latipes_hsok
ENSDARG00000040959	rabl3	100	93.562	ENSOMEG00000015066	rabl3	100	93.562	Oryzias_melastigma
ENSDARG00000040959	rabl3	93	91.406	ENSOGAG00000005961	RABL3	100	83.898	Otolemur_garnettii
ENSDARG00000040959	rabl3	100	86.017	ENSOARG00000019939	RABL3	100	86.017	Ovis_aries
ENSDARG00000040959	rabl3	94	81.982	ENSPPAG00000036997	RABL3	87	81.982	Pan_paniscus
ENSDARG00000040959	rabl3	93	92.188	ENSPPRG00000016325	RABL3	100	85.169	Panthera_pardus
ENSDARG00000040959	rabl3	93	92.188	ENSPTIG00000018021	RABL3	100	85.169	Panthera_tigris_altaica
ENSDARG00000040959	rabl3	93	90.625	ENSPTRG00000015272	RABL3	100	83.475	Pan_troglodytes
ENSDARG00000040959	rabl3	100	83.898	ENSPANG00000001339	RABL3	100	83.898	Papio_anubis
ENSDARG00000040959	rabl3	100	92.275	ENSPKIG00000007818	rabl3	100	92.275	Paramormyrops_kingsleyae
ENSDARG00000040959	rabl3	100	84.322	ENSPSIG00000011358	RABL3	100	84.322	Pelodiscus_sinensis
ENSDARG00000040959	rabl3	100	87.983	ENSPMGG00000015794	rabl3	100	87.983	Periophthalmus_magnuspinnatus
ENSDARG00000040959	rabl3	93	89.062	ENSPEMG00000016913	Rabl3	100	81.356	Peromyscus_maniculatus_bairdii
ENSDARG00000040959	rabl3	100	84.322	ENSPCIG00000018922	RABL3	100	84.322	Phascolarctos_cinereus
ENSDARG00000040959	rabl3	100	91.416	ENSPFOG00000008586	rabl3	100	91.416	Poecilia_formosa
ENSDARG00000040959	rabl3	100	91.416	ENSPLAG00000014482	rabl3	100	91.416	Poecilia_latipinna
ENSDARG00000040959	rabl3	100	91.416	ENSPMEG00000002295	rabl3	100	91.416	Poecilia_mexicana
ENSDARG00000040959	rabl3	100	91.416	ENSPREG00000014815	rabl3	100	91.416	Poecilia_reticulata
ENSDARG00000040959	rabl3	100	83.898	ENSPPYG00000013501	RABL3	100	83.898	Pongo_abelii
ENSDARG00000040959	rabl3	93	92.188	ENSPCOG00000022230	RABL3	100	85.169	Propithecus_coquereli
ENSDARG00000040959	rabl3	100	83.475	ENSPVAG00000010013	RABL3	100	83.475	Pteropus_vampyrus
ENSDARG00000040959	rabl3	100	93.991	ENSPNYG00000006659	rabl3	100	93.991	Pundamilia_nyererei
ENSDARG00000040959	rabl3	100	94.421	ENSPNAG00000000748	rabl3	100	94.421	Pygocentrus_nattereri
ENSDARG00000040959	rabl3	93	89.844	ENSRNOG00000026085	Rabl3	100	81.356	Rattus_norvegicus
ENSDARG00000040959	rabl3	100	83.898	ENSRBIG00000040941	RABL3	100	83.898	Rhinopithecus_bieti
ENSDARG00000040959	rabl3	100	83.898	ENSRROG00000043745	RABL3	100	83.898	Rhinopithecus_roxellana
ENSDARG00000040959	rabl3	93	92.969	ENSSBOG00000004022	RABL3	100	85.593	Saimiri_boliviensis_boliviensis
ENSDARG00000040959	rabl3	100	83.475	ENSSHAG00000012233	RABL3	100	83.475	Sarcophilus_harrisii
ENSDARG00000040959	rabl3	100	91.416	ENSSFOG00015010171	rabl3	100	91.416	Scleropages_formosus
ENSDARG00000040959	rabl3	100	92.308	ENSSMAG00000002403	rabl3	100	92.308	Scophthalmus_maximus
ENSDARG00000040959	rabl3	100	93.991	ENSSDUG00000012078	rabl3	100	93.991	Seriola_dumerili
ENSDARG00000040959	rabl3	100	94.421	ENSSLDG00000021899	rabl3	100	94.421	Seriola_lalandi_dorsalis
ENSDARG00000040959	rabl3	93	92.188	ENSSARG00000008316	RABL3	100	84.746	Sorex_araneus
ENSDARG00000040959	rabl3	100	85.169	ENSSPUG00000017490	RABL3	100	85.169	Sphenodon_punctatus
ENSDARG00000040959	rabl3	100	95.279	ENSSPAG00000011642	rabl3	100	95.279	Stegastes_partitus
ENSDARG00000040959	rabl3	100	85.593	ENSSSCG00000035258	RABL3	100	85.593	Sus_scrofa
ENSDARG00000040959	rabl3	100	83.051	ENSTGUG00000013374	RABL3	100	83.051	Taeniopygia_guttata
ENSDARG00000040959	rabl3	93	95.312	ENSTRUG00000007846	RABL3	100	95.312	Takifugu_rubripes
ENSDARG00000040959	rabl3	93	91.406	ENSTBEG00000005153	RABL3	100	72.034	Tupaia_belangeri
ENSDARG00000040959	rabl3	93	92.188	ENSUAMG00000005299	RABL3	100	84.322	Ursus_americanus
ENSDARG00000040959	rabl3	93	91.406	ENSUMAG00000025256	RABL3	89	83.898	Ursus_maritimus
ENSDARG00000040959	rabl3	100	85.593	ENSVPAG00000003776	RABL3	100	85.593	Vicugna_pacos
ENSDARG00000040959	rabl3	93	92.188	ENSVVUG00000022300	RABL3	89	85.169	Vulpes_vulpes
ENSDARG00000040959	rabl3	100	90.987	ENSXMAG00000003244	rabl3	100	90.987	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0004252	serine-type endopeptidase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0006508	proteolysis	-	IEA	Process
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process