EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000041243 (Gene tree)
Gene ID: 553292
Gene Symbol: setdb1a
Alias: fc07d03|si:ch211-81a5.6|wu:fc07d03
Full Name: SET domain%2C bifurcated 1a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 35984 bases
Position: chr19:9111550-9147533
Accession: ZDB-GENE-030131-2421
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000060441	MBD	PF01429.19	4.6e-06	1	1
ENSDARP00000082769	MBD	PF01429.19	4.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000144985	-	493	-	-	- (aa)	-	-
ENSDART00000088336	-	4840	-	ENSDARP00000082769	1436 (aa)	-	Q1L8U8
ENSDART00000060442	-	7696	-	ENSDARP00000060441	1436 (aa)	-	Q1L8U8

Gene Model

Click here to download ENSDARG00000041243's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000041243's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000041243	setdb1a	70	85.714	ENSDARG00000099021	setdb1b	80	85.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000041243	setdb1a	60	86.598	ENSAPOG00000016228	setdb1b	62	86.598	Acanthochromis_polyacanthus
ENSDARG00000041243	setdb1a	67	86.598	ENSACIG00000007359	setdb1b	80	86.598	Amphilophus_citrinellus
ENSDARG00000041243	setdb1a	54	86.598	ENSAPEG00000007774	setdb1b	77	86.598	Amphiprion_percula
ENSDARG00000041243	setdb1a	65	69.291	ENSAPLG00000013908	SETDB1	61	69.291	Anas_platyrhynchos
ENSDARG00000041243	setdb1a	63	86.598	ENSACLG00000020489	setdb1b	65	86.598	Astatotilapia_calliptera
ENSDARG00000041243	setdb1a	71	53.416	ENSAMXG00000010030	setdb1a	78	53.416	Astyanax_mexicanus
ENSDARG00000041243	setdb1a	63	84.694	ENSAMXG00000016168	setdb1b	65	84.694	Astyanax_mexicanus
ENSDARG00000041243	setdb1a	71	64.626	ENSCAFG00020013596	SETDB1	75	70.079	Canis_lupus_dingo
ENSDARG00000041243	setdb1a	56	70.079	ENSCANG00000036388	SETDB1	64	70.079	Colobus_angolensis_palliatus
ENSDARG00000041243	setdb1a	59	86.598	ENSCSEG00000002988	setdb1b	78	86.598	Cynoglossus_semilaevis
ENSDARG00000041243	setdb1a	60	76.106	ENSCVAG00000008877	setdb1b	65	76.106	Cyprinodon_variegatus
ENSDARG00000041243	setdb1a	68	64.626	ENSDNOG00000007754	SETDB1	53	64.626	Dasypus_novemcinctus
ENSDARG00000041243	setdb1a	64	64.626	ENSDORG00000006830	Setdb1	65	64.626	Dipodomys_ordii
ENSDARG00000041243	setdb1a	74	47.727	ENSELUG00000006204	-	86	41.261	Esox_lucius
ENSDARG00000041243	setdb1a	60	85.714	ENSELUG00000013948	setdb1b	88	43.149	Esox_lucius
ENSDARG00000041243	setdb1a	66	84.848	ENSFHEG00000022195	setdb1b	64	76.106	Fundulus_heteroclitus
ENSDARG00000041243	setdb1a	60	84.536	ENSGMOG00000005993	setdb1b	54	72.222	Gadus_morhua
ENSDARG00000041243	setdb1a	55	80.328	ENSGAFG00000012805	setdb1b	62	80.328	Gambusia_affinis
ENSDARG00000041243	setdb1a	61	86.598	ENSHBUG00000004618	setdb1b	63	86.598	Haplochromis_burtoni
ENSDARG00000041243	setdb1a	51	86.598	ENSHCOG00000014567	setdb1b	64	86.598	Hippocampus_comes
ENSDARG00000041243	setdb1a	83	56.168	ENSIPUG00000007923	setdb1a	89	57.012	Ictalurus_punctatus
ENSDARG00000041243	setdb1a	64	64.626	ENSSTOG00000006770	SETDB1	61	64.626	Ictidomys_tridecemlineatus
ENSDARG00000041243	setdb1a	66	83.838	ENSKMAG00000001197	setdb1b	63	83.838	Kryptolebias_marmoratus
ENSDARG00000041243	setdb1a	58	69.531	ENSLACG00000011159	SETDB1	60	69.531	Latimeria_chalumnae
ENSDARG00000041243	setdb1a	64	70.079	ENSLAFG00000004006	SETDB1	60	70.079	Loxodonta_africana
ENSDARG00000041243	setdb1a	63	86.598	ENSMZEG00005016099	setdb1b	65	86.598	Maylandia_zebra
ENSDARG00000041243	setdb1a	61	65.306	ENSMOCG00000017407	Setdb1	64	65.306	Microtus_ochrogaster
ENSDARG00000041243	setdb1a	70	85.859	ENSMMOG00000016162	setdb1b	77	85.859	Mola_mola
ENSDARG00000041243	setdb1a	73	64.626	MGP_CAROLIEiJ_G0025342	Setdb1	63	64.626	Mus_caroli
ENSDARG00000041243	setdb1a	65	64.626	ENSMUSG00000015697	Setdb1	63	64.626	Mus_musculus
ENSDARG00000041243	setdb1a	60	70.866	ENSMLUG00000010486	SETDB1	60	70.866	Myotis_lucifugus
ENSDARG00000041243	setdb1a	72	86.598	ENSNBRG00000003147	setdb1b	78	86.598	Neolamprologus_brichardi
ENSDARG00000041243	setdb1a	56	70.866	ENSMEUG00000006544	-	61	70.866	Notamacropus_eugenii
ENSDARG00000041243	setdb1a	73	69.531	ENSMEUG00000000555	-	53	69.531	Notamacropus_eugenii
ENSDARG00000041243	setdb1a	64	85.714	ENSORLG00000010602	setdb1b	65	84.848	Oryzias_latipes
ENSDARG00000041243	setdb1a	64	85.714	ENSORLG00015014543	setdb1b	64	84.848	Oryzias_latipes_hsok
ENSDARG00000041243	setdb1a	72	85.714	ENSOMEG00000009457	setdb1b	52	84.848	Oryzias_melastigma
ENSDARG00000041243	setdb1a	65	85.567	ENSPKIG00000010963	setdb1b	50	80.189	Paramormyrops_kingsleyae
ENSDARG00000041243	setdb1a	60	69.231	ENSPMAG00000001573	setdb1b	59	69.231	Petromyzon_marinus
ENSDARG00000041243	setdb1a	55	84.848	ENSPFOG00000004623	-	60	76.106	Poecilia_formosa
ENSDARG00000041243	setdb1a	67	84.848	ENSPFOG00000004429	setdb1b	50	76.106	Poecilia_formosa
ENSDARG00000041243	setdb1a	55	83.607	ENSPLAG00000017117	setdb1b	63	83.607	Poecilia_latipinna
ENSDARG00000041243	setdb1a	58	84.848	ENSPLAG00000019076	-	65	76.106	Poecilia_latipinna
ENSDARG00000041243	setdb1a	58	84.848	ENSPMEG00000006468	setdb1b	65	76.106	Poecilia_mexicana
ENSDARG00000041243	setdb1a	58	84.848	ENSPREG00000017459	setdb1b	64	76.106	Poecilia_reticulata
ENSDARG00000041243	setdb1a	71	86.598	ENSPNYG00000003997	setdb1b	68	86.598	Pundamilia_nyererei
ENSDARG00000041243	setdb1a	72	85.567	ENSPNAG00000021617	setdb1b	53	77.064	Pygocentrus_nattereri
ENSDARG00000041243	setdb1a	58	74.219	ENSPNAG00000003444	setdb1a	72	74.219	Pygocentrus_nattereri
ENSDARG00000041243	setdb1a	67	70.866	ENSSHAG00000012701	SETDB1	62	70.866	Sarcophilus_harrisii
ENSDARG00000041243	setdb1a	65	85.567	ENSSFOG00015022183	setdb1	62	85.567	Scleropages_formosus
ENSDARG00000041243	setdb1a	65	84.848	ENSSMAG00000015398	setdb1b	61	84.848	Scophthalmus_maximus
ENSDARG00000041243	setdb1a	70	86.869	ENSSDUG00000007513	setdb1b	62	86.869	Seriola_dumerili
ENSDARG00000041243	setdb1a	61	86.869	ENSSLDG00000015209	setdb1b	62	86.869	Seriola_lalandi_dorsalis
ENSDARG00000041243	setdb1a	67	84.536	ENSTRUG00000014641	setdb1b	54	84.536	Takifugu_rubripes
ENSDARG00000041243	setdb1a	66	84.848	ENSXCOG00000019497	setdb1b	50	72.222	Xiphophorus_couchianus
ENSDARG00000041243	setdb1a	57	84.848	ENSXMAG00000016600	setdb1b	63	76.106	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0007265	Ras protein signal transduction	-	ISS	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0034968	histone lysine methylation	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0090309	positive regulation of methylation-dependent chromatin silencing	-	ISS	Process
GO:1990841	promoter-specific chromatin binding	-	ISS	Function