EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000041299 (Gene tree)
Gene ID: 503755
Gene Symbol: zgc:110796
Alias: cb676|msi1
Full Name: zgc:110796
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 2605 bases
Position: chr5:6617401-6620005
Accession: ZDB-GENE-050306-36
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000060531	RRM_1	PF00076.22	4.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000060532	-	1458	XM_005171742	ENSDARP00000060531	94 (aa)	XP_005171799	Q5CZN9

Gene Model

Click here to download ENSDARG00000041299's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000041299's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000041299	zgc:110796	79	55.405	ENSDARG00000007960	hnrnpaba	60	55.405
ENSDARG00000041299	zgc:110796	88	43.373	ENSDARG00000059351	hnrnpa3	59	46.667
ENSDARG00000041299	zgc:110796	98	68.478	ENSDARG00000032614	msi2b	100	78.571
ENSDARG00000041299	zgc:110796	72	39.706	ENSDARG00000102995	rbm24a	61	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000041299	zgc:110796	98	91.304	ENSAPOG00000003191	MSI1	50	72.000	Acanthochromis_polyacanthus
ENSDARG00000041299	zgc:110796	74	92.857	ENSACIG00000017754	-	54	92.857	Amphilophus_citrinellus
ENSDARG00000041299	zgc:110796	100	86.170	ENSACIG00000018210	zgc:110796	100	84.043	Amphilophus_citrinellus
ENSDARG00000041299	zgc:110796	100	90.426	ENSACLG00000011230	MSI1	80	90.426	Astatotilapia_calliptera
ENSDARG00000041299	zgc:110796	98	78.261	ENSCSAG00000002265	MSI1	50	86.667	Chlorocebus_sabaeus
ENSDARG00000041299	zgc:110796	100	90.426	ENSCVAG00000017430	zgc:110796	68	90.426	Cyprinodon_variegatus
ENSDARG00000041299	zgc:110796	98	89.130	ENSGACG00000012679	MSI1	50	85.870	Gasterosteus_aculeatus
ENSDARG00000041299	zgc:110796	98	72.917	ENSHCOG00000012067	-	73	73.684	Hippocampus_comes
ENSDARG00000041299	zgc:110796	98	90.217	ENSKMAG00000011251	MSI1	53	87.912	Kryptolebias_marmoratus
ENSDARG00000041299	zgc:110796	97	90.110	ENSLOCG00000008618	zgc:110796	57	89.011	Lepisosteus_oculatus
ENSDARG00000041299	zgc:110796	74	85.714	ENSMAUG00000016820	Msi1	58	85.714	Mesocricetus_auratus
ENSDARG00000041299	zgc:110796	100	91.489	ENSNBRG00000018002	zgc:110796	100	91.489	Neolamprologus_brichardi
ENSDARG00000041299	zgc:110796	73	82.609	ENSPSIG00000016295	-	56	82.609	Pelodiscus_sinensis
ENSDARG00000041299	zgc:110796	100	76.042	ENSPREG00000020265	zgc:110796	81	73.958	Poecilia_reticulata
ENSDARG00000041299	zgc:110796	98	70.588	ENSSPAG00000015573	zgc:110796	72	68.627	Stegastes_partitus
ENSDARG00000041299	zgc:110796	100	89.362	ENSTRUG00000021586	-	94	87.234	Takifugu_rubripes
ENSDARG00000041299	zgc:110796	74	85.714	ENSUAMG00000015514	MSI1	54	85.714	Ursus_americanus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component