EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000041428 (Gene tree)
Gene ID: 797343
Gene Symbol: yrdc
Alias: zgc:162301
Full Name: yrdC N(6)-threonylcarbamoyltransferase domain containing
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 11778 bases
Position: chr16:4178949-4190726
Accession: ZDB-GENE-070410-65
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000146581	Sua5_yciO_yrdC	PF01300.18	9.1e-51	1	1
ENSDARP00000156493	Sua5_yciO_yrdC	PF01300.18	9.1e-51	1	1
ENSDARP00000060728	Sua5_yciO_yrdC	PF01300.18	1.2e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000188592	-	1687	-	ENSDARP00000156493	235 (aa)	-	A4IG71
ENSDART00000060729	-	1737	-	ENSDARP00000060728	263 (aa)	-	F1R994
ENSDART00000180921	-	1557	-	ENSDARP00000146581	235 (aa)	-	A4IG71

Gene Model

Click here to download ENSDARG00000041428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000041428's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000041428	yrdc	97	58.120	ENSG00000196449	YRDC	83	57.872	Homo_sapiens
ENSDARG00000041428	yrdc	98	72.650	ENSAPOG00000024293	yrdc	90	72.650	Acanthochromis_polyacanthus
ENSDARG00000041428	yrdc	79	60.847	ENSAMEG00000001173	YRDC	99	60.847	Ailuropoda_melanoleuca
ENSDARG00000041428	yrdc	100	72.034	ENSACIG00000017330	yrdc	89	72.034	Amphilophus_citrinellus
ENSDARG00000041428	yrdc	98	73.077	ENSAOCG00000021647	yrdc	90	73.077	Amphiprion_ocellaris
ENSDARG00000041428	yrdc	98	73.077	ENSAPEG00000006164	yrdc	90	73.077	Amphiprion_percula
ENSDARG00000041428	yrdc	97	72.222	ENSATEG00000010086	yrdc	87	72.222	Anabas_testudineus
ENSDARG00000041428	yrdc	81	58.763	ENSACAG00000017203	YRDC	94	58.291	Anolis_carolinensis
ENSDARG00000041428	yrdc	89	57.944	ENSANAG00000031052	-	77	57.944	Aotus_nancymaae
ENSDARG00000041428	yrdc	90	59.070	ENSANAG00000028788	-	91	59.070	Aotus_nancymaae
ENSDARG00000041428	yrdc	98	72.845	ENSACLG00000027775	yrdc	87	72.845	Astatotilapia_calliptera
ENSDARG00000041428	yrdc	98	75.745	ENSAMXG00000037791	yrdc	89	75.745	Astyanax_mexicanus
ENSDARG00000041428	yrdc	97	57.872	ENSBTAG00000006510	YRDC	95	53.903	Bos_taurus
ENSDARG00000041428	yrdc	94	35.586	WBGene00012997	Y48C3A.18	97	38.462	Caenorhabditis_elegans
ENSDARG00000041428	yrdc	97	57.447	ENSCJAG00000002078	YRDC	64	57.447	Callithrix_jacchus
ENSDARG00000041428	yrdc	89	60.377	ENSCAFG00000003253	YRDC	92	53.053	Canis_familiaris
ENSDARG00000041428	yrdc	89	61.792	ENSCAFG00020007843	YRDC	84	57.872	Canis_lupus_dingo
ENSDARG00000041428	yrdc	97	58.298	ENSCHIG00000007882	YRDC	83	58.298	Capra_hircus
ENSDARG00000041428	yrdc	71	60.819	ENSTSYG00000005555	YRDC	61	60.819	Carlito_syrichta
ENSDARG00000041428	yrdc	95	58.261	ENSCPOG00000036144	YRDC	81	58.261	Cavia_porcellus
ENSDARG00000041428	yrdc	97	57.447	ENSCCAG00000028891	YRDC	83	57.447	Cebus_capucinus
ENSDARG00000041428	yrdc	97	56.838	ENSCATG00000036928	YRDC	83	57.447	Cercocebus_atys
ENSDARG00000041428	yrdc	94	57.642	ENSCLAG00000015012	YRDC	81	57.391	Chinchilla_lanigera
ENSDARG00000041428	yrdc	97	56.838	ENSCSAG00000001116	YRDC	83	57.447	Chlorocebus_sabaeus
ENSDARG00000041428	yrdc	68	55.901	ENSCHOG00000005500	YRDC	77	55.901	Choloepus_hoffmanni
ENSDARG00000041428	yrdc	88	62.085	ENSCPBG00000018446	YRDC	90	62.085	Chrysemys_picta_bellii
ENSDARG00000041428	yrdc	85	46.479	ENSCING00000007564	-	98	46.479	Ciona_intestinalis
ENSDARG00000041428	yrdc	85	43.541	ENSCSAVG00000009982	-	98	43.541	Ciona_savignyi
ENSDARG00000041428	yrdc	97	56.838	ENSCANG00000031111	YRDC	83	57.447	Colobus_angolensis_palliatus
ENSDARG00000041428	yrdc	97	57.021	ENSCGRG00001014496	-	83	56.780	Cricetulus_griseus_chok1gshd
ENSDARG00000041428	yrdc	97	51.915	ENSCGRG00001000829	-	65	51.477	Cricetulus_griseus_chok1gshd
ENSDARG00000041428	yrdc	52	59.524	ENSCGRG00000001307	-	98	59.524	Cricetulus_griseus_crigri
ENSDARG00000041428	yrdc	88	74.757	ENSCSEG00000019075	yrdc	76	74.757	Cynoglossus_semilaevis
ENSDARG00000041428	yrdc	97	71.429	ENSCVAG00000017355	yrdc	88	71.429	Cyprinodon_variegatus
ENSDARG00000041428	yrdc	82	45.960	ENSDNOG00000036198	-	96	45.960	Dasypus_novemcinctus
ENSDARG00000041428	yrdc	94	56.769	ENSDNOG00000038789	-	82	56.338	Dasypus_novemcinctus
ENSDARG00000041428	yrdc	81	62.051	ENSDORG00000008788	Yrdc	85	62.051	Dipodomys_ordii
ENSDARG00000041428	yrdc	82	48.990	FBgn0061361	CG33786	79	48.990	Drosophila_melanogaster
ENSDARG00000041428	yrdc	95	44.783	ENSETEG00000003442	YRDC	81	44.783	Echinops_telfairi
ENSDARG00000041428	yrdc	97	48.696	ENSEBUG00000014080	yrdc	99	47.679	Eptatretus_burgeri
ENSDARG00000041428	yrdc	89	60.849	ENSEASG00005012253	YRDC	83	57.447	Equus_asinus_asinus
ENSDARG00000041428	yrdc	97	57.692	ENSECAG00000022522	YRDC	83	57.447	Equus_caballus
ENSDARG00000041428	yrdc	98	71.429	ENSELUG00000018071	yrdc	79	71.429	Esox_lucius
ENSDARG00000041428	yrdc	97	57.265	ENSFCAG00000011018	YRDC	83	57.021	Felis_catus
ENSDARG00000041428	yrdc	80	65.625	ENSFALG00000000964	YRDC	89	64.796	Ficedula_albicollis
ENSDARG00000041428	yrdc	79	30.000	ENSFALG00000011333	-	52	30.000	Ficedula_albicollis
ENSDARG00000041428	yrdc	98	67.949	ENSFHEG00000001029	yrdc	87	68.056	Fundulus_heteroclitus
ENSDARG00000041428	yrdc	87	72.683	ENSGMOG00000015635	yrdc	99	72.683	Gadus_morhua
ENSDARG00000041428	yrdc	87	62.679	ENSGALG00000029001	YRDC	82	62.679	Gallus_gallus
ENSDARG00000041428	yrdc	79	30.435	ENSGALG00000025899	-	66	30.435	Gallus_gallus
ENSDARG00000041428	yrdc	98	69.231	ENSGAFG00000008396	yrdc	88	69.231	Gambusia_affinis
ENSDARG00000041428	yrdc	98	69.068	ENSGACG00000013878	yrdc	98	69.068	Gasterosteus_aculeatus
ENSDARG00000041428	yrdc	88	62.085	ENSGAGG00000014968	YRDC	91	62.085	Gopherus_agassizii
ENSDARG00000041428	yrdc	97	58.120	ENSGGOG00000007619	YRDC	83	57.872	Gorilla_gorilla
ENSDARG00000041428	yrdc	98	73.276	ENSHBUG00000009298	yrdc	87	73.276	Haplochromis_burtoni
ENSDARG00000041428	yrdc	97	57.021	ENSHGLG00000014075	YRDC	82	57.021	Heterocephalus_glaber_female
ENSDARG00000041428	yrdc	87	60.096	ENSHGLG00100002734	YRDC	74	60.096	Heterocephalus_glaber_male
ENSDARG00000041428	yrdc	98	71.429	ENSHCOG00000006598	yrdc	93	70.940	Hippocampus_comes
ENSDARG00000041428	yrdc	98	76.068	ENSIPUG00000014985	yrdc	97	76.068	Ictalurus_punctatus
ENSDARG00000041428	yrdc	97	58.051	ENSSTOG00000001643	YRDC	83	58.051	Ictidomys_tridecemlineatus
ENSDARG00000041428	yrdc	98	70.085	ENSKMAG00000013468	yrdc	88	70.085	Kryptolebias_marmoratus
ENSDARG00000041428	yrdc	99	74.468	ENSLBEG00000027501	yrdc	88	74.468	Labrus_bergylta
ENSDARG00000041428	yrdc	79	32.500	ENSLACG00000017624	si:ch211-153b23.3	61	32.500	Latimeria_chalumnae
ENSDARG00000041428	yrdc	97	59.836	ENSLACG00000010689	YRDC	96	66.827	Latimeria_chalumnae
ENSDARG00000041428	yrdc	100	67.078	ENSLOCG00000003321	yrdc	100	67.078	Lepisosteus_oculatus
ENSDARG00000041428	yrdc	97	56.838	ENSLAFG00000017556	YRDC	83	56.838	Loxodonta_africana
ENSDARG00000041428	yrdc	88	59.524	ENSMFAG00000003487	YRDC	98	60.476	Macaca_fascicularis
ENSDARG00000041428	yrdc	97	56.838	ENSMMUG00000005372	YRDC	62	57.447	Macaca_mulatta
ENSDARG00000041428	yrdc	97	56.838	ENSMNEG00000029348	YRDC	83	57.447	Macaca_nemestrina
ENSDARG00000041428	yrdc	62	60.403	ENSMLEG00000041122	YRDC	97	61.745	Mandrillus_leucophaeus
ENSDARG00000041428	yrdc	97	70.386	ENSMAMG00000007315	yrdc	87	70.386	Mastacembelus_armatus
ENSDARG00000041428	yrdc	98	72.845	ENSMZEG00005006948	yrdc	87	72.845	Maylandia_zebra
ENSDARG00000041428	yrdc	84	64.677	ENSMGAG00000002833	YRDC	98	64.677	Meleagris_gallopavo
ENSDARG00000041428	yrdc	97	58.190	ENSMICG00000031688	YRDC	83	57.940	Microcebus_murinus
ENSDARG00000041428	yrdc	68	55.215	ENSMOCG00000000164	-	63	54.878	Microtus_ochrogaster
ENSDARG00000041428	yrdc	98	73.593	ENSMMOG00000002119	yrdc	88	73.593	Mola_mola
ENSDARG00000041428	yrdc	88	61.321	ENSMODG00000017750	YRDC	75	61.321	Monodelphis_domestica
ENSDARG00000041428	yrdc	97	73.707	ENSMALG00000012471	yrdc	92	71.193	Monopterus_albus
ENSDARG00000041428	yrdc	88	57.746	MGP_CAROLIEiJ_G0026453	Yrdc	98	63.107	Mus_caroli
ENSDARG00000041428	yrdc	95	57.826	ENSMUSG00000028889	Yrdc	100	63.810	Mus_musculus
ENSDARG00000041428	yrdc	95	57.456	MGP_PahariEiJ_G0028784	Yrdc	100	63.810	Mus_pahari
ENSDARG00000041428	yrdc	95	57.826	MGP_SPRETEiJ_G0027432	Yrdc	81	57.826	Mus_spretus
ENSDARG00000041428	yrdc	89	59.624	ENSMPUG00000014542	YRDC	84	59.624	Mustela_putorius_furo
ENSDARG00000041428	yrdc	87	50.239	ENSMLUG00000028796	-	74	50.239	Myotis_lucifugus
ENSDARG00000041428	yrdc	81	56.923	ENSMLUG00000024310	-	96	56.923	Myotis_lucifugus
ENSDARG00000041428	yrdc	97	57.265	ENSMLUG00000000955	-	83	57.265	Myotis_lucifugus
ENSDARG00000041428	yrdc	86	60.386	ENSNGAG00000019099	Yrdc	74	60.386	Nannospalax_galili
ENSDARG00000041428	yrdc	98	73.276	ENSNBRG00000009475	yrdc	88	73.276	Neolamprologus_brichardi
ENSDARG00000041428	yrdc	97	57.328	ENSNLEG00000011665	YRDC	83	57.082	Nomascus_leucogenys
ENSDARG00000041428	yrdc	86	62.136	ENSMEUG00000005068	YRDC	96	62.136	Notamacropus_eugenii
ENSDARG00000041428	yrdc	97	56.897	ENSODEG00000007401	YRDC	100	63.810	Octodon_degus
ENSDARG00000041428	yrdc	98	73.276	ENSONIG00000016213	yrdc	98	73.276	Oreochromis_niloticus
ENSDARG00000041428	yrdc	97	57.692	ENSOCUG00000005384	YRDC	79	58.298	Oryctolagus_cuniculus
ENSDARG00000041428	yrdc	98	68.354	ENSORLG00000014393	yrdc	89	68.354	Oryzias_latipes
ENSDARG00000041428	yrdc	98	68.936	ENSORLG00020019663	yrdc	89	68.936	Oryzias_latipes_hni
ENSDARG00000041428	yrdc	98	67.660	ENSORLG00015004625	yrdc	89	67.660	Oryzias_latipes_hsok
ENSDARG00000041428	yrdc	98	69.099	ENSOMEG00000018550	yrdc	89	69.099	Oryzias_melastigma
ENSDARG00000041428	yrdc	97	56.223	ENSOGAG00000030474	YRDC	84	56.223	Otolemur_garnettii
ENSDARG00000041428	yrdc	97	58.298	ENSOARG00000019873	YRDC	82	58.298	Ovis_aries
ENSDARG00000041428	yrdc	61	62.585	ENSPPAG00000039722	-	97	62.585	Pan_paniscus
ENSDARG00000041428	yrdc	97	57.265	ENSPPRG00000007752	YRDC	83	57.021	Panthera_pardus
ENSDARG00000041428	yrdc	64	58.974	ENSPTIG00000019821	YRDC	66	58.974	Panthera_tigris_altaica
ENSDARG00000041428	yrdc	97	58.120	ENSPTRG00000000557	YRDC	83	57.872	Pan_troglodytes
ENSDARG00000041428	yrdc	97	56.838	ENSPANG00000006487	YRDC	62	57.447	Papio_anubis
ENSDARG00000041428	yrdc	97	69.787	ENSPKIG00000004574	yrdc	93	65.882	Paramormyrops_kingsleyae
ENSDARG00000041428	yrdc	88	63.507	ENSPSIG00000006483	YRDC	74	63.507	Pelodiscus_sinensis
ENSDARG00000041428	yrdc	98	68.085	ENSPMGG00000004184	yrdc	91	68.085	Periophthalmus_magnuspinnatus
ENSDARG00000041428	yrdc	72	60.116	ENSPEMG00000016985	Yrdc	76	60.116	Peromyscus_maniculatus_bairdii
ENSDARG00000041428	yrdc	74	56.742	ENSPMAG00000002905	yrdc	96	56.742	Petromyzon_marinus
ENSDARG00000041428	yrdc	88	60.849	ENSPCIG00000025731	YRDC	76	60.849	Phascolarctos_cinereus
ENSDARG00000041428	yrdc	98	68.376	ENSPFOG00000023097	yrdc	88	68.376	Poecilia_formosa
ENSDARG00000041428	yrdc	98	67.949	ENSPLAG00000020882	yrdc	88	67.949	Poecilia_latipinna
ENSDARG00000041428	yrdc	98	68.376	ENSPMEG00000013237	yrdc	88	68.376	Poecilia_mexicana
ENSDARG00000041428	yrdc	98	68.376	ENSPREG00000005285	yrdc	88	68.376	Poecilia_reticulata
ENSDARG00000041428	yrdc	89	61.321	ENSPPYG00000001523	-	86	61.321	Pongo_abelii
ENSDARG00000041428	yrdc	95	56.957	ENSPCAG00000016850	YRDC	93	53.640	Procavia_capensis
ENSDARG00000041428	yrdc	97	57.759	ENSPCOG00000013214	YRDC	83	57.511	Propithecus_coquereli
ENSDARG00000041428	yrdc	97	56.170	ENSPVAG00000010147	YRDC	96	52.768	Pteropus_vampyrus
ENSDARG00000041428	yrdc	98	72.845	ENSPNYG00000013956	yrdc	87	72.845	Pundamilia_nyererei
ENSDARG00000041428	yrdc	90	75.926	ENSPNAG00000015625	yrdc	89	75.926	Pygocentrus_nattereri
ENSDARG00000041428	yrdc	91	59.091	ENSRNOG00000025424	Yrdc	81	57.826	Rattus_norvegicus
ENSDARG00000041428	yrdc	97	56.838	ENSRBIG00000032289	YRDC	83	57.447	Rhinopithecus_bieti
ENSDARG00000041428	yrdc	90	57.534	ENSRROG00000039370	YRDC	74	58.447	Rhinopithecus_roxellana
ENSDARG00000041428	yrdc	96	56.332	ENSSBOG00000018937	YRDC	97	56.332	Saimiri_boliviensis_boliviensis
ENSDARG00000041428	yrdc	60	63.448	ENSSHAG00000013957	-	98	63.448	Sarcophilus_harrisii
ENSDARG00000041428	yrdc	98	65.812	ENSSFOG00015006128	yrdc	98	65.812	Scleropages_formosus
ENSDARG00000041428	yrdc	99	72.034	ENSSMAG00000005195	yrdc	90	72.034	Scophthalmus_maximus
ENSDARG00000041428	yrdc	98	73.077	ENSSDUG00000009775	yrdc	88	73.077	Seriola_dumerili
ENSDARG00000041428	yrdc	60	31.818	ENSSDUG00000006736	-	75	32.215	Seriola_dumerili
ENSDARG00000041428	yrdc	54	31.818	ENSSDUG00000006631	-	64	32.331	Seriola_dumerili
ENSDARG00000041428	yrdc	54	31.818	ENSSLDG00000008694	-	63	32.331	Seriola_lalandi_dorsalis
ENSDARG00000041428	yrdc	98	73.077	ENSSLDG00000003196	yrdc	88	73.077	Seriola_lalandi_dorsalis
ENSDARG00000041428	yrdc	88	65.403	ENSSPUG00000003946	YRDC	82	65.403	Sphenodon_punctatus
ENSDARG00000041428	yrdc	98	72.650	ENSSPAG00000012559	yrdc	88	72.650	Stegastes_partitus
ENSDARG00000041428	yrdc	97	58.723	ENSSSCG00000040425	YRDC	83	58.475	Sus_scrofa
ENSDARG00000041428	yrdc	60	67.586	ENSTGUG00000001507	YRDC	99	67.586	Taeniopygia_guttata
ENSDARG00000041428	yrdc	98	65.690	ENSTRUG00000005923	yrdc	89	65.690	Takifugu_rubripes
ENSDARG00000041428	yrdc	62	61.333	ENSTBEG00000008863	YRDC	96	61.333	Tupaia_belangeri
ENSDARG00000041428	yrdc	59	64.085	ENSTTRG00000013538	-	95	64.085	Tursiops_truncatus
ENSDARG00000041428	yrdc	86	61.951	ENSUAMG00000006150	YRDC	100	61.951	Ursus_americanus
ENSDARG00000041428	yrdc	95	48.246	ENSVPAG00000006642	YRDC	97	48.246	Vicugna_pacos
ENSDARG00000041428	yrdc	87	63.636	ENSXETG00000014420	yrdc	88	63.636	Xenopus_tropicalis
ENSDARG00000041428	yrdc	98	67.094	ENSXCOG00000000829	yrdc	98	67.094	Xiphophorus_couchianus
ENSDARG00000041428	yrdc	98	67.094	ENSXMAG00000014606	yrdc	83	67.094	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006450	regulation of translational fidelity	21873635.	IBA	Process
GO:0016779	nucleotidyltransferase activity	21873635.	IBA	Function