EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000041481 (Gene tree)
Gene ID: 553261
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 40801 bases
Position: chr16:45693413-45734213
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000060808	EST1	PF10374.9	7.7e-23	1	1
ENSDARP00000060808	EST1_DNA_bind	PF10373.9	1.8e-42	1	1
ENSDARP00000060808	PIN_4	PF13638.6	8.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000060809	-	3764	-	ENSDARP00000060808	1099 (aa)	-	F1R7R1

Gene Model

Click here to download ENSDARG00000041481's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000041481's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000041481	smg5	100	77.397	ENSAPOG00000019690	smg5	100	77.748	Acanthochromis_polyacanthus
ENSDARG00000041481	smg5	100	75.335	ENSACIG00000001353	smg5	99	74.955	Amphilophus_citrinellus
ENSDARG00000041481	smg5	100	78.464	ENSAOCG00000019483	smg5	100	77.935	Amphiprion_ocellaris
ENSDARG00000041481	smg5	100	78.288	ENSAPEG00000022949	smg5	100	77.935	Amphiprion_percula
ENSDARG00000041481	smg5	100	76.943	ENSATEG00000005348	smg5	100	76.923	Anabas_testudineus
ENSDARG00000041481	smg5	98	63.967	ENSAPLG00000010263	SMG5	100	62.364	Anas_platyrhynchos
ENSDARG00000041481	smg5	98	62.604	ENSANAG00000032899	SMG5	52	60.806	Aotus_nancymaae
ENSDARG00000041481	smg5	100	77.160	ENSACLG00000009311	smg5	100	77.630	Astatotilapia_calliptera
ENSDARG00000041481	smg5	100	82.671	ENSAMXG00000024616	smg5	100	83.078	Astyanax_mexicanus
ENSDARG00000041481	smg5	91	50.835	ENSBTAG00000021747	-	94	51.079	Bos_taurus
ENSDARG00000041481	smg5	99	62.443	ENSCAFG00000016839	SMG5	52	59.601	Canis_familiaris
ENSDARG00000041481	smg5	99	62.443	ENSCAFG00020006061	SMG5	52	59.601	Canis_lupus_dingo
ENSDARG00000041481	smg5	86	51.220	ENSCHIG00000006323	-	86	51.095	Capra_hircus
ENSDARG00000041481	smg5	51	75.090	ENSCHOG00000008741	-	57	75.090	Choloepus_hoffmanni
ENSDARG00000041481	smg5	94	62.500	ENSCPBG00000025848	SMG5	56	60.490	Chrysemys_picta_bellii
ENSDARG00000041481	smg5	78	38.636	ENSCING00000008706	-	84	38.636	Ciona_intestinalis
ENSDARG00000041481	smg5	100	76.486	ENSCSEG00000014220	smg5	100	76.903	Cynoglossus_semilaevis
ENSDARG00000041481	smg5	100	67.240	ENSCVAG00000000529	smg5	99	67.719	Cyprinodon_variegatus
ENSDARG00000041481	smg5	73	39.370	ENSDNOG00000039862	-	88	39.370	Dasypus_novemcinctus
ENSDARG00000041481	smg5	71	31.414	FBgn0019890	Smg5	72	31.414	Drosophila_melanogaster
ENSDARG00000041481	smg5	75	83.495	ENSETEG00000010336	SMG5	63	83.495	Echinops_telfairi
ENSDARG00000041481	smg5	63	54.684	ENSEBUG00000003739	smg5	98	42.002	Eptatretus_burgeri
ENSDARG00000041481	smg5	66	80.747	ENSEEUG00000012690	SMG5	75	80.747	Erinaceus_europaeus
ENSDARG00000041481	smg5	94	90.931	ENSELUG00000012585	smg5	100	77.956	Esox_lucius
ENSDARG00000041481	smg5	92	79.759	ENSFCAG00000011783	SMG5	99	60.328	Felis_catus
ENSDARG00000041481	smg5	59	65.231	ENSFALG00000001166	-	66	81.203	Ficedula_albicollis
ENSDARG00000041481	smg5	86	84.713	ENSFHEG00000013939	smg5	95	84.444	Fundulus_heteroclitus
ENSDARG00000041481	smg5	100	75.000	ENSGMOG00000007310	smg5	100	74.847	Gadus_morhua
ENSDARG00000041481	smg5	99	64.183	ENSGALG00000029918	-	93	74.702	Gallus_gallus
ENSDARG00000041481	smg5	92	86.319	ENSGAFG00000021691	smg5	99	86.319	Gambusia_affinis
ENSDARG00000041481	smg5	100	76.190	ENSGACG00000013142	smg5	100	76.195	Gasterosteus_aculeatus
ENSDARG00000041481	smg5	100	77.582	ENSHBUG00000008654	smg5	100	77.582	Haplochromis_burtoni
ENSDARG00000041481	smg5	85	75.771	ENSHCOG00000010229	smg5	94	80.000	Hippocampus_comes
ENSDARG00000041481	smg5	100	79.335	ENSIPUG00000006624	Smg5	100	79.245	Ictalurus_punctatus
ENSDARG00000041481	smg5	100	76.203	ENSKMAG00000014586	smg5	100	77.208	Kryptolebias_marmoratus
ENSDARG00000041481	smg5	100	77.670	ENSLBEG00000002145	smg5	100	78.477	Labrus_bergylta
ENSDARG00000041481	smg5	99	58.333	ENSLACG00000010521	SMG5	99	57.909	Latimeria_chalumnae
ENSDARG00000041481	smg5	100	70.615	ENSLOCG00000008380	smg5	99	73.974	Lepisosteus_oculatus
ENSDARG00000041481	smg5	99	62.996	ENSMMUG00000000090	SMG5	94	79.196	Macaca_mulatta
ENSDARG00000041481	smg5	99	57.848	ENSMLEG00000041192	SMG5	93	69.267	Mandrillus_leucophaeus
ENSDARG00000041481	smg5	100	76.258	ENSMAMG00000010683	smg5	100	77.482	Mastacembelus_armatus
ENSDARG00000041481	smg5	100	71.822	ENSMZEG00005015815	smg5	99	71.644	Maylandia_zebra
ENSDARG00000041481	smg5	66	67.711	ENSMZEG00005016543	smg5	100	67.302	Maylandia_zebra
ENSDARG00000041481	smg5	100	74.379	ENSMMOG00000017199	smg5	100	74.911	Mola_mola
ENSDARG00000041481	smg5	72	35.500	ENSMODG00000004532	-	86	34.837	Monodelphis_domestica
ENSDARG00000041481	smg5	69	35.171	ENSMODG00000004511	-	77	35.171	Monodelphis_domestica
ENSDARG00000041481	smg5	68	34.501	ENSMODG00000004735	-	85	34.501	Monodelphis_domestica
ENSDARG00000041481	smg5	70	34.375	ENSMODG00000010675	-	86	34.375	Monodelphis_domestica
ENSDARG00000041481	smg5	100	76.237	ENSMALG00000010375	smg5	100	75.554	Monopterus_albus
ENSDARG00000041481	smg5	99	63.628	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSDARG00000041481	smg5	99	63.793	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSDARG00000041481	smg5	99	63.975	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSDARG00000041481	smg5	99	63.538	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSDARG00000041481	smg5	94	60.383	ENSMPUG00000004546	SMG5	93	78.592	Mustela_putorius_furo
ENSDARG00000041481	smg5	79	50.250	ENSNGAG00000012101	-	93	50.250	Nannospalax_galili
ENSDARG00000041481	smg5	97	71.244	ENSNBRG00000004332	smg5	98	72.037	Neolamprologus_brichardi
ENSDARG00000041481	smg5	99	63.793	ENSOPRG00000009152	SMG5	52	60.989	Ochotona_princeps
ENSDARG00000041481	smg5	100	77.188	ENSONIG00000008632	smg5	100	76.876	Oreochromis_niloticus
ENSDARG00000041481	smg5	78	45.146	ENSOCUG00000023338	-	93	45.146	Oryctolagus_cuniculus
ENSDARG00000041481	smg5	100	76.486	ENSORLG00000016239	smg5	100	76.068	Oryzias_latipes
ENSDARG00000041481	smg5	100	76.643	ENSORLG00020013127	smg5	100	76.224	Oryzias_latipes_hni
ENSDARG00000041481	smg5	100	76.643	ENSORLG00015019014	smg5	100	76.224	Oryzias_latipes_hsok
ENSDARG00000041481	smg5	84	75.370	ENSOMEG00000021330	smg5	92	78.788	Oryzias_melastigma
ENSDARG00000041481	smg5	91	51.429	ENSOARG00000011963	-	87	51.306	Ovis_aries
ENSDARG00000041481	smg5	98	61.638	ENSPPRG00000011901	SMG5	93	79.597	Panthera_pardus
ENSDARG00000041481	smg5	97	58.170	ENSPTIG00000007892	SMG5	91	77.273	Panthera_tigris_altaica
ENSDARG00000041481	smg5	86	80.229	ENSPTRG00000049282	-	84	80.229	Pan_troglodytes
ENSDARG00000041481	smg5	100	79.364	ENSPKIG00000009402	smg5	100	78.474	Paramormyrops_kingsleyae
ENSDARG00000041481	smg5	98	64.489	ENSPSIG00000015198	SMG5	52	60.490	Pelodiscus_sinensis
ENSDARG00000041481	smg5	100	70.404	ENSPMGG00000010465	smg5	100	70.609	Periophthalmus_magnuspinnatus
ENSDARG00000041481	smg5	85	64.090	ENSPMAG00000000410	smg5	93	63.902	Petromyzon_marinus
ENSDARG00000041481	smg5	100	77.984	ENSPFOG00000010191	smg5	100	77.847	Poecilia_formosa
ENSDARG00000041481	smg5	100	77.265	ENSPLAG00000009332	smg5	100	77.758	Poecilia_latipinna
ENSDARG00000041481	smg5	100	78.073	ENSPMEG00000014105	smg5	100	77.847	Poecilia_mexicana
ENSDARG00000041481	smg5	100	77.620	ENSPREG00000017713	smg5	100	78.222	Poecilia_reticulata
ENSDARG00000041481	smg5	99	56.715	ENSPVAG00000016748	SMG5	93	66.430	Pteropus_vampyrus
ENSDARG00000041481	smg5	100	77.221	ENSPNYG00000013397	smg5	100	76.693	Pundamilia_nyererei
ENSDARG00000041481	smg5	100	81.826	ENSPNAG00000028363	smg5	100	82.640	Pygocentrus_nattereri
ENSDARG00000041481	smg5	75	40.421	ENSSHAG00000009572	-	79	42.680	Sarcophilus_harrisii
ENSDARG00000041481	smg5	52	35.821	ENSSHAG00000000935	-	82	35.821	Sarcophilus_harrisii
ENSDARG00000041481	smg5	70	36.272	ENSSHAG00000000561	-	95	35.859	Sarcophilus_harrisii
ENSDARG00000041481	smg5	100	79.586	ENSSFOG00015024175	smg5	100	79.422	Scleropages_formosus
ENSDARG00000041481	smg5	100	77.236	ENSSMAG00000013059	smg5	100	77.837	Scophthalmus_maximus
ENSDARG00000041481	smg5	100	77.417	ENSSDUG00000007122	smg5	100	78.150	Seriola_dumerili
ENSDARG00000041481	smg5	100	78.180	ENSSLDG00000011418	smg5	100	78.338	Seriola_lalandi_dorsalis
ENSDARG00000041481	smg5	64	67.986	ENSSARG00000012484	SMG5	76	67.986	Sorex_araneus
ENSDARG00000041481	smg5	94	62.559	ENSSPUG00000002260	SMG5	100	61.776	Sphenodon_punctatus
ENSDARG00000041481	smg5	100	77.573	ENSSPAG00000014266	smg5	100	78.257	Stegastes_partitus
ENSDARG00000041481	smg5	99	59.548	ENSSSCG00000006490	-	93	79.433	Sus_scrofa
ENSDARG00000041481	smg5	99	49.182	ENSSSCG00000039308	-	91	57.210	Sus_scrofa
ENSDARG00000041481	smg5	99	64.914	ENSTGUG00000003748	-	53	61.456	Taeniopygia_guttata
ENSDARG00000041481	smg5	100	74.779	ENSTRUG00000012580	smg5	100	74.182	Takifugu_rubripes
ENSDARG00000041481	smg5	100	73.369	ENSTNIG00000010303	smg5	100	73.652	Tetraodon_nigroviridis
ENSDARG00000041481	smg5	53	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSDARG00000041481	smg5	99	60.995	ENSUAMG00000013721	SMG5	95	79.177	Ursus_americanus
ENSDARG00000041481	smg5	98	68.455	ENSUMAG00000018041	SMG5	97	75.669	Ursus_maritimus
ENSDARG00000041481	smg5	54	70.792	ENSVPAG00000009446	SMG5	93	69.327	Vicugna_pacos
ENSDARG00000041481	smg5	99	62.715	ENSVVUG00000005887	SMG5	52	59.601	Vulpes_vulpes
ENSDARG00000041481	smg5	79	56.621	ENSXETG00000033791	SMG5	99	55.619	Xenopus_tropicalis
ENSDARG00000041481	smg5	81	84.865	ENSXCOG00000004379	smg5	99	85.714	Xiphophorus_couchianus
ENSDARG00000041481	smg5	100	76.909	ENSXMAG00000013499	smg5	100	77.402	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043009	chordate embryonic development	19414594.	IMP	Process
GO:0070034	telomerase RNA binding	21873635.	IBA	Function