EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000041830 (Gene tree)
Gene ID: 334107
Gene Symbol: tsn
Alias: id:ibd2900|wu:fb38b07|wu:fi31h02|zgc:123170
Full Name: translin
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9836 bases
Position: chr9:22929675-22939510
Accession: ZDB-GENE-030131-6039
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000061298	Translin	PF01997.16	3.8e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000061299	-	2359	-	ENSDARP00000061298	227 (aa)	-	Q4V9N1

Gene Model

Click here to download ENSDARG00000041830's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000041830's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000041830	tsn	99	79.464	ENSG00000211460	TSN	98	79.464	Homo_sapiens
ENSDARG00000041830	tsn	100	88.987	ENSAPOG00000002063	tsn	100	88.987	Acanthochromis_polyacanthus
ENSDARG00000041830	tsn	99	79.911	ENSAMEG00000005055	TSN	98	79.911	Ailuropoda_melanoleuca
ENSDARG00000041830	tsn	100	90.749	ENSACIG00000021694	tsn	100	90.749	Amphilophus_citrinellus
ENSDARG00000041830	tsn	100	88.987	ENSAOCG00000015574	tsn	100	88.987	Amphiprion_ocellaris
ENSDARG00000041830	tsn	100	88.987	ENSAPEG00000001677	tsn	100	88.987	Amphiprion_percula
ENSDARG00000041830	tsn	100	89.427	ENSATEG00000004115	tsn	100	89.427	Anabas_testudineus
ENSDARG00000041830	tsn	59	30.065	ENSAPLG00000013433	-	53	30.065	Anas_platyrhynchos
ENSDARG00000041830	tsn	94	78.082	ENSACAG00000004757	TSN	99	78.082	Anolis_carolinensis
ENSDARG00000041830	tsn	99	79.464	ENSANAG00000026842	TSN	98	79.464	Aotus_nancymaae
ENSDARG00000041830	tsn	100	90.749	ENSACLG00000020831	tsn	100	90.749	Astatotilapia_calliptera
ENSDARG00000041830	tsn	100	90.749	ENSAMXG00000035417	tsn	100	90.749	Astyanax_mexicanus
ENSDARG00000041830	tsn	99	79.911	ENSBTAG00000006059	TSN	98	79.911	Bos_taurus
ENSDARG00000041830	tsn	99	79.464	ENSCJAG00000047222	-	98	79.464	Callithrix_jacchus
ENSDARG00000041830	tsn	50	65.487	ENSCJAG00000008511	-	88	65.487	Callithrix_jacchus
ENSDARG00000041830	tsn	99	79.464	ENSCJAG00000044533	-	98	79.464	Callithrix_jacchus
ENSDARG00000041830	tsn	99	79.911	ENSCAFG00000004700	TSN	93	79.911	Canis_familiaris
ENSDARG00000041830	tsn	99	79.911	ENSCAFG00020011747	TSN	98	79.911	Canis_lupus_dingo
ENSDARG00000041830	tsn	99	79.911	ENSCHIG00000010715	TSN	98	79.911	Capra_hircus
ENSDARG00000041830	tsn	99	79.464	ENSTSYG00000004395	TSN	98	79.464	Carlito_syrichta
ENSDARG00000041830	tsn	96	62.443	ENSCAPG00000015595	TSN	88	62.443	Cavia_aperea
ENSDARG00000041830	tsn	99	79.464	ENSCPOG00000035645	TSN	98	79.464	Cavia_porcellus
ENSDARG00000041830	tsn	99	79.018	ENSCCAG00000026371	TSN	98	79.018	Cebus_capucinus
ENSDARG00000041830	tsn	67	65.132	ENSCCAG00000034886	-	84	65.132	Cebus_capucinus
ENSDARG00000041830	tsn	99	79.464	ENSCATG00000032155	TSN	98	79.464	Cercocebus_atys
ENSDARG00000041830	tsn	99	79.464	ENSCLAG00000006171	TSN	98	79.464	Chinchilla_lanigera
ENSDARG00000041830	tsn	99	79.464	ENSCSAG00000016712	TSN	98	79.464	Chlorocebus_sabaeus
ENSDARG00000041830	tsn	97	66.364	ENSCPBG00000018116	-	96	66.364	Chrysemys_picta_bellii
ENSDARG00000041830	tsn	67	72.848	ENSCPBG00000013741	-	80	72.848	Chrysemys_picta_bellii
ENSDARG00000041830	tsn	96	48.165	ENSCING00000012612	-	100	48.165	Ciona_intestinalis
ENSDARG00000041830	tsn	98	46.637	ENSCSAVG00000009485	-	99	46.637	Ciona_savignyi
ENSDARG00000041830	tsn	99	79.464	ENSCANG00000041881	TSN	98	79.464	Colobus_angolensis_palliatus
ENSDARG00000041830	tsn	99	79.911	ENSCGRG00001018233	Tsn	98	79.911	Cricetulus_griseus_chok1gshd
ENSDARG00000041830	tsn	99	79.911	ENSCGRG00000008331	Tsn	98	79.911	Cricetulus_griseus_crigri
ENSDARG00000041830	tsn	98	85.650	ENSCSEG00000005825	tsn	98	85.650	Cynoglossus_semilaevis
ENSDARG00000041830	tsn	99	80.357	ENSCVAG00000022024	tsn	99	80.804	Cyprinodon_variegatus
ENSDARG00000041830	tsn	99	79.911	ENSDNOG00000025740	TSN	98	79.911	Dasypus_novemcinctus
ENSDARG00000041830	tsn	99	79.464	ENSDORG00000026251	-	98	79.464	Dipodomys_ordii
ENSDARG00000041830	tsn	98	52.915	FBgn0033528	trsn	94	52.915	Drosophila_melanogaster
ENSDARG00000041830	tsn	99	79.911	ENSEASG00005004774	TSN	98	79.911	Equus_asinus_asinus
ENSDARG00000041830	tsn	99	79.911	ENSECAG00000015930	TSN	98	79.911	Equus_caballus
ENSDARG00000041830	tsn	75	81.765	ENSEEUG00000013935	TSN	98	81.765	Erinaceus_europaeus
ENSDARG00000041830	tsn	100	90.749	ENSELUG00000007669	tsn	100	90.749	Esox_lucius
ENSDARG00000041830	tsn	99	79.911	ENSFCAG00000027149	TSN	98	79.911	Felis_catus
ENSDARG00000041830	tsn	70	62.264	ENSFCAG00000022306	-	90	62.264	Felis_catus
ENSDARG00000041830	tsn	90	79.412	ENSFALG00000013247	TSN	94	76.389	Ficedula_albicollis
ENSDARG00000041830	tsn	99	79.464	ENSFDAG00000012302	TSN	98	79.464	Fukomys_damarensis
ENSDARG00000041830	tsn	100	88.987	ENSFHEG00000015531	tsn	100	88.987	Fundulus_heteroclitus
ENSDARG00000041830	tsn	99	85.398	ENSGMOG00000009247	tsn	100	85.398	Gadus_morhua
ENSDARG00000041830	tsn	99	78.571	ENSGALG00000011652	TSN	98	78.571	Gallus_gallus
ENSDARG00000041830	tsn	100	88.987	ENSGAFG00000003816	tsn	100	88.987	Gambusia_affinis
ENSDARG00000041830	tsn	97	90.000	ENSGACG00000000235	tsn	96	90.000	Gasterosteus_aculeatus
ENSDARG00000041830	tsn	99	79.464	ENSGGOG00000002216	TSN	98	79.464	Gorilla_gorilla
ENSDARG00000041830	tsn	100	90.308	ENSHBUG00000002340	tsn	85	90.308	Haplochromis_burtoni
ENSDARG00000041830	tsn	99	79.464	ENSHGLG00000007038	TSN	98	79.464	Heterocephalus_glaber_female
ENSDARG00000041830	tsn	99	79.464	ENSHGLG00100000069	TSN	98	79.464	Heterocephalus_glaber_male
ENSDARG00000041830	tsn	99	86.667	ENSHCOG00000001756	tsn	100	86.667	Hippocampus_comes
ENSDARG00000041830	tsn	100	91.189	ENSIPUG00000021370	tsn	100	91.189	Ictalurus_punctatus
ENSDARG00000041830	tsn	99	79.464	ENSSTOG00000000972	TSN	98	79.464	Ictidomys_tridecemlineatus
ENSDARG00000041830	tsn	99	79.464	ENSJJAG00000006730	Tsn	98	79.464	Jaculus_jaculus
ENSDARG00000041830	tsn	100	90.749	ENSKMAG00000004996	tsn	100	90.749	Kryptolebias_marmoratus
ENSDARG00000041830	tsn	100	90.308	ENSLBEG00000012620	tsn	100	90.308	Labrus_bergylta
ENSDARG00000041830	tsn	100	63.043	ENSLACG00000005246	TSN	100	63.043	Latimeria_chalumnae
ENSDARG00000041830	tsn	99	88.839	ENSLOCG00000002191	tsn	97	88.839	Lepisosteus_oculatus
ENSDARG00000041830	tsn	99	75.000	ENSLAFG00000032428	TSN	98	75.000	Loxodonta_africana
ENSDARG00000041830	tsn	99	79.464	ENSMFAG00000044217	TSN	98	79.464	Macaca_fascicularis
ENSDARG00000041830	tsn	99	79.464	ENSMMUG00000021119	TSN	98	79.464	Macaca_mulatta
ENSDARG00000041830	tsn	99	79.464	ENSMNEG00000040632	TSN	98	79.464	Macaca_nemestrina
ENSDARG00000041830	tsn	55	73.387	ENSMLEG00000038656	TSN	96	73.387	Mandrillus_leucophaeus
ENSDARG00000041830	tsn	100	88.987	ENSMAMG00000019536	tsn	100	88.987	Mastacembelus_armatus
ENSDARG00000041830	tsn	100	90.749	ENSMZEG00005018715	tsn	85	90.749	Maylandia_zebra
ENSDARG00000041830	tsn	75	79.651	ENSMGAG00000011956	TSN	88	79.651	Meleagris_gallopavo
ENSDARG00000041830	tsn	91	80.097	ENSMAUG00000018800	Tsn	98	81.188	Mesocricetus_auratus
ENSDARG00000041830	tsn	99	79.464	ENSMICG00000015793	TSN	98	79.464	Microcebus_murinus
ENSDARG00000041830	tsn	100	79.825	ENSMOCG00000013248	Tsn	100	79.825	Microtus_ochrogaster
ENSDARG00000041830	tsn	90	87.805	ENSMMOG00000019661	tsn	100	87.805	Mola_mola
ENSDARG00000041830	tsn	97	77.376	ENSMODG00000000147	TSN	98	76.444	Monodelphis_domestica
ENSDARG00000041830	tsn	100	88.987	ENSMALG00000001827	tsn	100	88.987	Monopterus_albus
ENSDARG00000041830	tsn	99	79.911	ENSMUSG00000026374	Tsn	98	79.911	Mus_musculus
ENSDARG00000041830	tsn	99	79.911	MGP_PahariEiJ_G0027742	Tsn	98	79.911	Mus_pahari
ENSDARG00000041830	tsn	99	79.911	MGP_SPRETEiJ_G0015313	Tsn	98	79.911	Mus_spretus
ENSDARG00000041830	tsn	99	79.911	ENSMPUG00000001056	TSN	98	79.911	Mustela_putorius_furo
ENSDARG00000041830	tsn	89	81.188	ENSMLUG00000012656	TSN	98	81.188	Myotis_lucifugus
ENSDARG00000041830	tsn	99	79.464	ENSNGAG00000010353	Tsn	98	79.464	Nannospalax_galili
ENSDARG00000041830	tsn	100	90.749	ENSNBRG00000001193	tsn	100	90.749	Neolamprologus_brichardi
ENSDARG00000041830	tsn	99	79.464	ENSNLEG00000032773	TSN	98	79.464	Nomascus_leucogenys
ENSDARG00000041830	tsn	99	57.143	ENSMEUG00000006228	TSN	98	57.143	Notamacropus_eugenii
ENSDARG00000041830	tsn	62	65.957	ENSOPRG00000004858	-	100	65.957	Ochotona_princeps
ENSDARG00000041830	tsn	99	79.464	ENSODEG00000008386	-	98	79.464	Octodon_degus
ENSDARG00000041830	tsn	99	63.393	ENSODEG00000005998	-	98	63.393	Octodon_degus
ENSDARG00000041830	tsn	100	90.308	ENSONIG00000017060	tsn	100	90.308	Oreochromis_niloticus
ENSDARG00000041830	tsn	88	80.905	ENSOANG00000003457	TSN	98	79.803	Ornithorhynchus_anatinus
ENSDARG00000041830	tsn	99	79.464	ENSOCUG00000023529	TSN	98	79.464	Oryctolagus_cuniculus
ENSDARG00000041830	tsn	100	88.106	ENSORLG00000010049	tsn	100	88.106	Oryzias_latipes
ENSDARG00000041830	tsn	100	88.987	ENSORLG00020016476	tsn	100	88.987	Oryzias_latipes_hni
ENSDARG00000041830	tsn	63	85.417	ENSORLG00020017000	-	84	85.417	Oryzias_latipes_hni
ENSDARG00000041830	tsn	100	88.546	ENSORLG00015019192	tsn	100	88.546	Oryzias_latipes_hsok
ENSDARG00000041830	tsn	100	88.546	ENSOMEG00000016335	tsn	100	88.546	Oryzias_melastigma
ENSDARG00000041830	tsn	99	79.464	ENSOGAG00000030436	TSN	98	79.464	Otolemur_garnettii
ENSDARG00000041830	tsn	99	79.911	ENSOARG00000013339	TSN	98	79.911	Ovis_aries
ENSDARG00000041830	tsn	99	79.464	ENSPPAG00000032878	TSN	98	79.464	Pan_paniscus
ENSDARG00000041830	tsn	93	54.245	ENSPPRG00000004174	-	90	54.245	Panthera_pardus
ENSDARG00000041830	tsn	99	79.911	ENSPPRG00000006531	TSN	98	79.911	Panthera_pardus
ENSDARG00000041830	tsn	56	71.429	ENSPTIG00000012953	TSN	88	69.466	Panthera_tigris_altaica
ENSDARG00000041830	tsn	99	79.464	ENSPTRG00000012420	TSN	98	79.464	Pan_troglodytes
ENSDARG00000041830	tsn	99	79.464	ENSPANG00000000733	TSN	98	79.464	Papio_anubis
ENSDARG00000041830	tsn	100	88.987	ENSPKIG00000002005	tsn	100	88.987	Paramormyrops_kingsleyae
ENSDARG00000041830	tsn	77	80.000	ENSPSIG00000006064	TSN	96	80.000	Pelodiscus_sinensis
ENSDARG00000041830	tsn	100	88.546	ENSPMGG00000015287	tsn	100	88.546	Periophthalmus_magnuspinnatus
ENSDARG00000041830	tsn	99	65.044	ENSPMAG00000009161	tsn	97	65.044	Petromyzon_marinus
ENSDARG00000041830	tsn	89	79.803	ENSPCIG00000023491	TSN	98	79.703	Phascolarctos_cinereus
ENSDARG00000041830	tsn	100	89.868	ENSPFOG00000016063	tsn	100	89.868	Poecilia_formosa
ENSDARG00000041830	tsn	100	89.868	ENSPLAG00000010654	tsn	100	89.868	Poecilia_latipinna
ENSDARG00000041830	tsn	100	90.308	ENSPMEG00000023570	tsn	100	90.308	Poecilia_mexicana
ENSDARG00000041830	tsn	100	89.868	ENSPREG00000003481	tsn	100	89.868	Poecilia_reticulata
ENSDARG00000041830	tsn	99	79.464	ENSPPYG00000012774	TSN	98	79.464	Pongo_abelii
ENSDARG00000041830	tsn	75	81.176	ENSPCAG00000003549	TSN	98	81.176	Procavia_capensis
ENSDARG00000041830	tsn	99	79.464	ENSPCOG00000011045	TSN	98	79.464	Propithecus_coquereli
ENSDARG00000041830	tsn	99	79.911	ENSPVAG00000016702	TSN	98	79.911	Pteropus_vampyrus
ENSDARG00000041830	tsn	100	90.749	ENSPNYG00000012396	tsn	85	90.749	Pundamilia_nyererei
ENSDARG00000041830	tsn	100	91.630	ENSPNAG00000018140	tsn	100	91.630	Pygocentrus_nattereri
ENSDARG00000041830	tsn	99	79.911	ENSRNOG00000002319	Tsn	98	79.911	Rattus_norvegicus
ENSDARG00000041830	tsn	99	79.464	ENSRBIG00000041316	TSN	98	79.464	Rhinopithecus_bieti
ENSDARG00000041830	tsn	99	79.464	ENSRROG00000029954	TSN	98	79.464	Rhinopithecus_roxellana
ENSDARG00000041830	tsn	84	62.632	ENSSBOG00000015719	-	94	62.632	Saimiri_boliviensis_boliviensis
ENSDARG00000041830	tsn	99	79.464	ENSSBOG00000028579	TSN	98	79.464	Saimiri_boliviensis_boliviensis
ENSDARG00000041830	tsn	99	78.571	ENSSHAG00000011707	TSN	98	78.571	Sarcophilus_harrisii
ENSDARG00000041830	tsn	100	87.665	ENSSFOG00015020668	tsn	100	87.665	Scleropages_formosus
ENSDARG00000041830	tsn	100	85.463	ENSSMAG00000005822	tsn	100	85.463	Scophthalmus_maximus
ENSDARG00000041830	tsn	100	91.189	ENSSDUG00000011388	tsn	100	91.189	Seriola_dumerili
ENSDARG00000041830	tsn	100	91.189	ENSSLDG00000008206	tsn	100	91.189	Seriola_lalandi_dorsalis
ENSDARG00000041830	tsn	99	54.464	ENSSARG00000007193	-	98	54.464	Sorex_araneus
ENSDARG00000041830	tsn	99	77.632	ENSSPUG00000017518	TSN	100	77.632	Sphenodon_punctatus
ENSDARG00000041830	tsn	100	89.427	ENSSPAG00000009283	tsn	100	89.427	Stegastes_partitus
ENSDARG00000041830	tsn	99	79.911	ENSSSCG00000015729	TSN	98	81.188	Sus_scrofa
ENSDARG00000041830	tsn	99	78.571	ENSTGUG00000004445	TSN	98	78.571	Taeniopygia_guttata
ENSDARG00000041830	tsn	98	85.650	ENSTRUG00000013691	tsn	99	85.650	Takifugu_rubripes
ENSDARG00000041830	tsn	100	85.903	ENSTNIG00000015707	tsn	100	85.903	Tetraodon_nigroviridis
ENSDARG00000041830	tsn	99	79.464	ENSTBEG00000015319	TSN	98	79.464	Tupaia_belangeri
ENSDARG00000041830	tsn	99	79.911	ENSTTRG00000005854	TSN	98	79.911	Tursiops_truncatus
ENSDARG00000041830	tsn	99	79.911	ENSUAMG00000021618	TSN	98	79.911	Ursus_americanus
ENSDARG00000041830	tsn	99	78.571	ENSUMAG00000008516	TSN	98	78.571	Ursus_maritimus
ENSDARG00000041830	tsn	57	61.240	ENSVPAG00000009874	-	100	61.240	Vicugna_pacos
ENSDARG00000041830	tsn	89	81.188	ENSVVUG00000027555	TSN	97	81.188	Vulpes_vulpes
ENSDARG00000041830	tsn	98	74.888	ENSXETG00000000838	tsn	98	74.888	Xenopus_tropicalis
ENSDARG00000041830	tsn	54	86.992	ENSXCOG00000018514	tsn	94	86.992	Xiphophorus_couchianus
ENSDARG00000041830	tsn	100	89.427	ENSXMAG00000022538	tsn	100	89.427	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0016070	RNA metabolic process	-	IEA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	-	IEA	Function