EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000041887 (Gene tree)
Gene ID: 796388
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 15850 bases
Position: chr8:36554816-36570665
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000061377	PRP21_like_P	PF12230.8	1.1e-53	1	1
ENSDARP00000108576	PRP21_like_P	PF12230.8	1.1e-53	1	1
ENSDARP00000150615	PRP21_like_P	PF12230.8	1.1e-53	1	1
ENSDARP00000061377	Surp	PF01805.20	7.7e-46	1	2
ENSDARP00000061377	Surp	PF01805.20	7.7e-46	2	2
ENSDARP00000108576	Surp	PF01805.20	7.7e-46	1	2
ENSDARP00000108576	Surp	PF01805.20	7.7e-46	2	2
ENSDARP00000150615	Surp	PF01805.20	7.7e-46	1	2
ENSDARP00000150615	Surp	PF01805.20	7.7e-46	2	2
ENSDARP00000113481	Surp	PF01805.20	1.9e-33	1	2
ENSDARP00000113481	Surp	PF01805.20	1.9e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000061378	-	2756	-	ENSDARP00000061377	780 (aa)	-	Q90X41
ENSDART00000126687	-	3057	XM_005167228	ENSDARP00000108576	780 (aa)	XP_005167285	Q90X41
ENSDART00000136418	-	705	-	ENSDARP00000113481	171 (aa)	-	E9QJK9
ENSDART00000185237	-	3167	-	ENSDARP00000150615	780 (aa)	-	Q90X41

Gene Model

Click here to download ENSDARG00000041887's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000041887's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000041887	sf3a1	97	85.137	ENSG00000099995	SF3A1	100	82.538	Homo_sapiens
ENSDARG00000041887	sf3a1	100	90.909	ENSAPOG00000020465	sf3a1	100	87.690	Acanthochromis_polyacanthus
ENSDARG00000041887	sf3a1	97	84.615	ENSAMEG00000007737	SF3A1	100	82.206	Ailuropoda_melanoleuca
ENSDARG00000041887	sf3a1	100	90.341	ENSACIG00000020672	sf3a1	100	86.929	Amphilophus_citrinellus
ENSDARG00000041887	sf3a1	100	90.909	ENSAOCG00000003060	sf3a1	100	87.690	Amphiprion_ocellaris
ENSDARG00000041887	sf3a1	100	90.909	ENSAPEG00000010735	sf3a1	100	87.690	Amphiprion_percula
ENSDARG00000041887	sf3a1	100	88.636	ENSATEG00000021201	sf3a1	96	87.500	Anabas_testudineus
ENSDARG00000041887	sf3a1	96	84.433	ENSAPLG00000009057	SF3A1	100	82.737	Anas_platyrhynchos
ENSDARG00000041887	sf3a1	100	82.873	ENSACAG00000009415	SF3A1	100	79.753	Anolis_carolinensis
ENSDARG00000041887	sf3a1	97	84.615	ENSANAG00000032045	SF3A1	100	82.286	Aotus_nancymaae
ENSDARG00000041887	sf3a1	100	90.857	ENSACLG00000012622	sf3a1	100	87.150	Astatotilapia_calliptera
ENSDARG00000041887	sf3a1	99	90.561	ENSAMXG00000005382	sf3a1	99	91.327	Astyanax_mexicanus
ENSDARG00000041887	sf3a1	97	84.746	ENSBTAG00000003390	SF3A1	100	82.412	Bos_taurus
ENSDARG00000041887	sf3a1	95	48.485	WBGene00004188	prp-21	60	50.847	Caenorhabditis_elegans
ENSDARG00000041887	sf3a1	97	84.746	ENSCJAG00000010370	SF3A1	100	82.412	Callithrix_jacchus
ENSDARG00000041887	sf3a1	97	84.615	ENSCAFG00000012559	SF3A1	100	82.286	Canis_familiaris
ENSDARG00000041887	sf3a1	97	84.615	ENSCAFG00020000838	SF3A1	100	82.286	Canis_lupus_dingo
ENSDARG00000041887	sf3a1	97	84.615	ENSCHIG00000018642	SF3A1	100	82.286	Capra_hircus
ENSDARG00000041887	sf3a1	97	84.615	ENSTSYG00000004739	SF3A1	100	82.286	Carlito_syrichta
ENSDARG00000041887	sf3a1	88	85.430	ENSCAPG00000015414	SF3A1	97	67.925	Cavia_aperea
ENSDARG00000041887	sf3a1	97	85.007	ENSCPOG00000014589	SF3A1	100	82.412	Cavia_porcellus
ENSDARG00000041887	sf3a1	97	84.615	ENSCCAG00000032006	SF3A1	100	82.286	Cebus_capucinus
ENSDARG00000041887	sf3a1	97	84.876	ENSCATG00000029241	SF3A1	100	82.538	Cercocebus_atys
ENSDARG00000041887	sf3a1	98	84.585	ENSCLAG00000006508	SF3A1	100	82.538	Chinchilla_lanigera
ENSDARG00000041887	sf3a1	97	84.876	ENSCSAG00000009470	SF3A1	100	82.538	Chlorocebus_sabaeus
ENSDARG00000041887	sf3a1	88	86.538	ENSCHOG00000005201	SF3A1	62	90.494	Choloepus_hoffmanni
ENSDARG00000041887	sf3a1	100	82.955	ENSCPBG00000007595	SF3A1	100	83.081	Chrysemys_picta_bellii
ENSDARG00000041887	sf3a1	92	68.125	ENSCSAVG00000005608	-	85	44.869	Ciona_savignyi
ENSDARG00000041887	sf3a1	97	84.876	ENSCANG00000033564	SF3A1	100	82.538	Colobus_angolensis_palliatus
ENSDARG00000041887	sf3a1	97	84.888	ENSCGRG00001008933	Sf3a1	100	82.286	Cricetulus_griseus_chok1gshd
ENSDARG00000041887	sf3a1	97	84.888	ENSCGRG00000006127	Sf3a1	100	82.286	Cricetulus_griseus_crigri
ENSDARG00000041887	sf3a1	100	88.636	ENSCSEG00000010792	sf3a1	100	86.058	Cynoglossus_semilaevis
ENSDARG00000041887	sf3a1	100	88.202	ENSCSEG00000008097	SF3A1	89	88.511	Cynoglossus_semilaevis
ENSDARG00000041887	sf3a1	100	88.701	ENSCVAG00000004560	sf3a1	100	84.442	Cyprinodon_variegatus
ENSDARG00000041887	sf3a1	97	84.655	ENSDNOG00000010629	SF3A1	98	82.868	Dasypus_novemcinctus
ENSDARG00000041887	sf3a1	97	84.876	ENSDORG00000005613	Sf3a1	100	82.286	Dipodomys_ordii
ENSDARG00000041887	sf3a1	85	87.838	ENSETEG00000017194	SF3A1	95	83.084	Echinops_telfairi
ENSDARG00000041887	sf3a1	92	80.255	ENSEBUG00000001285	sf3a1	96	68.867	Eptatretus_burgeri
ENSDARG00000041887	sf3a1	98	84.585	ENSEASG00005010254	SF3A1	100	82.538	Equus_asinus_asinus
ENSDARG00000041887	sf3a1	98	84.585	ENSECAG00000023962	SF3A1	100	82.538	Equus_caballus
ENSDARG00000041887	sf3a1	73	93.443	ENSEEUG00000003159	SF3A1	83	93.443	Erinaceus_europaeus
ENSDARG00000041887	sf3a1	100	91.477	ENSELUG00000022578	sf3a1	100	83.459	Esox_lucius
ENSDARG00000041887	sf3a1	97	84.746	ENSFCAG00000011932	SF3A1	100	82.412	Felis_catus
ENSDARG00000041887	sf3a1	96	83.752	ENSFALG00000006944	SF3A1	100	82.346	Ficedula_albicollis
ENSDARG00000041887	sf3a1	97	84.746	ENSFDAG00000009560	SF3A1	100	82.412	Fukomys_damarensis
ENSDARG00000041887	sf3a1	100	89.266	ENSFHEG00000010866	sf3a1	100	86.185	Fundulus_heteroclitus
ENSDARG00000041887	sf3a1	100	85.860	ENSGMOG00000016024	sf3a1	100	85.496	Gadus_morhua
ENSDARG00000041887	sf3a1	96	84.544	ENSGALG00000007937	SF3A1	100	82.219	Gallus_gallus
ENSDARG00000041887	sf3a1	100	89.266	ENSGAFG00000009111	sf3a1	100	85.678	Gambusia_affinis
ENSDARG00000041887	sf3a1	100	87.719	ENSGACG00000011893	sf3a1	100	85.805	Gasterosteus_aculeatus
ENSDARG00000041887	sf3a1	100	82.873	ENSGAGG00000000762	SF3A1	99	82.740	Gopherus_agassizii
ENSDARG00000041887	sf3a1	97	85.137	ENSGGOG00000012631	SF3A1	100	82.538	Gorilla_gorilla
ENSDARG00000041887	sf3a1	100	90.857	ENSHBUG00000015795	sf3a1	100	87.150	Haplochromis_burtoni
ENSDARG00000041887	sf3a1	97	84.746	ENSHGLG00000007907	SF3A1	100	82.412	Heterocephalus_glaber_female
ENSDARG00000041887	sf3a1	97	84.746	ENSHGLG00100013799	SF3A1	100	82.412	Heterocephalus_glaber_male
ENSDARG00000041887	sf3a1	100	86.286	ENSHCOG00000015423	sf3a1	100	83.990	Hippocampus_comes
ENSDARG00000041887	sf3a1	98	87.597	ENSIPUG00000002470	sf3a1	99	87.840	Ictalurus_punctatus
ENSDARG00000041887	sf3a1	97	84.746	ENSSTOG00000013892	SF3A1	100	82.412	Ictidomys_tridecemlineatus
ENSDARG00000041887	sf3a1	97	84.746	ENSJJAG00000022566	Sf3a1	100	82.434	Jaculus_jaculus
ENSDARG00000041887	sf3a1	100	88.636	ENSKMAG00000002400	sf3a1	100	85.660	Kryptolebias_marmoratus
ENSDARG00000041887	sf3a1	100	89.143	ENSLBEG00000022974	sf3a1	100	86.041	Labrus_bergylta
ENSDARG00000041887	sf3a1	100	85.876	ENSLACG00000003565	SF3A1	100	82.174	Latimeria_chalumnae
ENSDARG00000041887	sf3a1	100	88.202	ENSLOCG00000008251	sf3a1	99	88.325	Lepisosteus_oculatus
ENSDARG00000041887	sf3a1	97	56.161	ENSLAFG00000026032	-	97	56.016	Loxodonta_africana
ENSDARG00000041887	sf3a1	97	84.876	ENSLAFG00000000448	SF3A1	100	82.286	Loxodonta_africana
ENSDARG00000041887	sf3a1	97	84.746	ENSMFAG00000031979	SF3A1	100	82.412	Macaca_fascicularis
ENSDARG00000041887	sf3a1	97	84.746	ENSMMUG00000005547	SF3A1	100	82.412	Macaca_mulatta
ENSDARG00000041887	sf3a1	97	84.876	ENSMNEG00000037229	SF3A1	100	82.538	Macaca_nemestrina
ENSDARG00000041887	sf3a1	97	84.876	ENSMLEG00000041908	SF3A1	100	82.538	Mandrillus_leucophaeus
ENSDARG00000041887	sf3a1	100	89.773	ENSMAMG00000006460	sf3a1	96	88.021	Mastacembelus_armatus
ENSDARG00000041887	sf3a1	100	90.857	ENSMZEG00005009633	sf3a1	100	87.150	Maylandia_zebra
ENSDARG00000041887	sf3a1	96	84.544	ENSMGAG00000001330	SF3A1	100	83.033	Meleagris_gallopavo
ENSDARG00000041887	sf3a1	93	80.544	ENSMAUG00000020317	Sf3a1	94	80.136	Mesocricetus_auratus
ENSDARG00000041887	sf3a1	97	84.876	ENSMICG00000010038	SF3A1	100	81.658	Microcebus_murinus
ENSDARG00000041887	sf3a1	97	84.485	ENSMOCG00000008438	Sf3a1	100	82.161	Microtus_ochrogaster
ENSDARG00000041887	sf3a1	100	87.101	ENSMMOG00000015588	sf3a1	99	85.896	Mola_mola
ENSDARG00000041887	sf3a1	98	85.046	ENSMODG00000009270	SF3A1	100	83.375	Monodelphis_domestica
ENSDARG00000041887	sf3a1	100	88.764	ENSMALG00000000148	sf3a1	100	87.452	Monopterus_albus
ENSDARG00000041887	sf3a1	97	84.224	MGP_CAROLIEiJ_G0016029	Sf3a1	96	83.833	Mus_caroli
ENSDARG00000041887	sf3a1	97	84.224	ENSMUSG00000002129	Sf3a1	96	83.833	Mus_musculus
ENSDARG00000041887	sf3a1	97	84.094	MGP_PahariEiJ_G0016862	Sf3a1	96	83.703	Mus_pahari
ENSDARG00000041887	sf3a1	97	84.224	MGP_SPRETEiJ_G0016870	Sf3a1	96	83.833	Mus_spretus
ENSDARG00000041887	sf3a1	97	84.746	ENSMPUG00000013144	SF3A1	100	82.412	Mustela_putorius_furo
ENSDARG00000041887	sf3a1	97	84.746	ENSMLUG00000002139	SF3A1	100	82.412	Myotis_lucifugus
ENSDARG00000041887	sf3a1	98	84.715	ENSNGAG00000016977	Sf3a1	100	82.412	Nannospalax_galili
ENSDARG00000041887	sf3a1	100	89.831	ENSNBRG00000016642	sf3a1	100	86.929	Neolamprologus_brichardi
ENSDARG00000041887	sf3a1	97	84.876	ENSNLEG00000003686	SF3A1	100	82.538	Nomascus_leucogenys
ENSDARG00000041887	sf3a1	90	86.792	ENSMEUG00000008741	SF3A1	50	75.853	Notamacropus_eugenii
ENSDARG00000041887	sf3a1	97	84.876	ENSOPRG00000016636	SF3A1	100	82.789	Ochotona_princeps
ENSDARG00000041887	sf3a1	98	84.545	ENSODEG00000002571	SF3A1	100	82.390	Octodon_degus
ENSDARG00000041887	sf3a1	100	90.857	ENSONIG00000010848	sf3a1	100	87.294	Oreochromis_niloticus
ENSDARG00000041887	sf3a1	97	84.615	ENSOCUG00000007633	SF3A1	100	82.538	Oryctolagus_cuniculus
ENSDARG00000041887	sf3a1	100	90.857	ENSORLG00000013050	sf3a1	99	87.118	Oryzias_latipes
ENSDARG00000041887	sf3a1	100	90.857	ENSORLG00020003236	sf3a1	95	87.384	Oryzias_latipes_hni
ENSDARG00000041887	sf3a1	100	89.714	ENSORLG00015017411	sf3a1	100	86.768	Oryzias_latipes_hsok
ENSDARG00000041887	sf3a1	100	91.429	ENSOMEG00000013362	sf3a1	100	86.038	Oryzias_melastigma
ENSDARG00000041887	sf3a1	97	84.876	ENSOGAG00000012931	SF3A1	100	82.538	Otolemur_garnettii
ENSDARG00000041887	sf3a1	97	83.703	ENSOARG00000006849	SF3A1	100	81.281	Ovis_aries
ENSDARG00000041887	sf3a1	97	83.833	ENSPPAG00000041790	SF3A1	100	80.470	Pan_paniscus
ENSDARG00000041887	sf3a1	97	84.746	ENSPPRG00000004391	SF3A1	100	82.412	Panthera_pardus
ENSDARG00000041887	sf3a1	97	84.615	ENSPTIG00000000844	SF3A1	99	84.224	Panthera_tigris_altaica
ENSDARG00000041887	sf3a1	97	85.137	ENSPTRG00000014240	SF3A1	100	82.538	Pan_troglodytes
ENSDARG00000041887	sf3a1	97	84.876	ENSPANG00000020772	SF3A1	100	82.538	Papio_anubis
ENSDARG00000041887	sf3a1	90	89.375	ENSPSIG00000012803	SF3A1	99	94.505	Pelodiscus_sinensis
ENSDARG00000041887	sf3a1	97	85.433	ENSPMGG00000023096	sf3a1	100	84.494	Periophthalmus_magnuspinnatus
ENSDARG00000041887	sf3a1	97	84.757	ENSPEMG00000009494	Sf3a1	100	82.161	Peromyscus_maniculatus_bairdii
ENSDARG00000041887	sf3a1	100	71.751	ENSPMAG00000007139	-	93	77.431	Petromyzon_marinus
ENSDARG00000041887	sf3a1	98	85.046	ENSPCIG00000022692	SF3A1	100	83.627	Phascolarctos_cinereus
ENSDARG00000041887	sf3a1	100	78.444	ENSPFOG00000016768	sf3a1	100	77.296	Poecilia_formosa
ENSDARG00000041887	sf3a1	100	89.831	ENSPLAG00000017268	sf3a1	100	86.185	Poecilia_latipinna
ENSDARG00000041887	sf3a1	97	87.688	ENSPMEG00000019811	sf3a1	100	86.336	Poecilia_mexicana
ENSDARG00000041887	sf3a1	100	89.831	ENSPREG00000010347	sf3a1	100	86.312	Poecilia_reticulata
ENSDARG00000041887	sf3a1	97	84.876	ENSPPYG00000011707	SF3A1	100	82.538	Pongo_abelii
ENSDARG00000041887	sf3a1	58	84.298	ENSPCAG00000003266	SF3A1	57	84.298	Procavia_capensis
ENSDARG00000041887	sf3a1	97	84.876	ENSPCOG00000026630	SF3A1	100	81.658	Propithecus_coquereli
ENSDARG00000041887	sf3a1	95	83.957	ENSPVAG00000017719	SF3A1	94	83.556	Pteropus_vampyrus
ENSDARG00000041887	sf3a1	100	90.857	ENSPNYG00000018706	sf3a1	100	87.023	Pundamilia_nyererei
ENSDARG00000041887	sf3a1	99	90.689	ENSPNAG00000003721	sf3a1	99	91.071	Pygocentrus_nattereri
ENSDARG00000041887	sf3a1	98	83.592	ENSRNOG00000005218	Sf3a1	99	82.360	Rattus_norvegicus
ENSDARG00000041887	sf3a1	97	84.876	ENSRBIG00000032167	SF3A1	100	82.538	Rhinopithecus_bieti
ENSDARG00000041887	sf3a1	97	84.876	ENSRROG00000044908	SF3A1	100	82.538	Rhinopithecus_roxellana
ENSDARG00000041887	sf3a1	93	84.783	ENSSBOG00000021960	SF3A1	99	84.352	Saimiri_boliviensis_boliviensis
ENSDARG00000041887	sf3a1	99	81.242	ENSSHAG00000003666	SF3A1	99	81.242	Sarcophilus_harrisii
ENSDARG00000041887	sf3a1	100	89.747	ENSSFOG00015004579	sf3a1	100	90.506	Scleropages_formosus
ENSDARG00000041887	sf3a1	100	89.143	ENSSMAG00000004275	sf3a1	100	86.658	Scophthalmus_maximus
ENSDARG00000041887	sf3a1	100	90.857	ENSSDUG00000022219	sf3a1	100	87.421	Seriola_dumerili
ENSDARG00000041887	sf3a1	100	90.857	ENSSLDG00000012642	sf3a1	100	87.421	Seriola_lalandi_dorsalis
ENSDARG00000041887	sf3a1	97	82.008	ENSSARG00000005960	SF3A1	99	81.356	Sorex_araneus
ENSDARG00000041887	sf3a1	97	84.485	ENSSPUG00000018863	SF3A1	100	83.000	Sphenodon_punctatus
ENSDARG00000041887	sf3a1	100	91.429	ENSSPAG00000011856	sf3a1	100	88.056	Stegastes_partitus
ENSDARG00000041887	sf3a1	97	84.746	ENSSSCG00000010002	SF3A1	100	82.412	Sus_scrofa
ENSDARG00000041887	sf3a1	96	84.585	ENSTGUG00000010547	SF3A1	99	83.658	Taeniopygia_guttata
ENSDARG00000041887	sf3a1	100	89.714	ENSTRUG00000006118	sf3a1	100	84.244	Takifugu_rubripes
ENSDARG00000041887	sf3a1	65	85.821	ENSTNIG00000005713	sf3a1	88	89.286	Tetraodon_nigroviridis
ENSDARG00000041887	sf3a1	88	87.821	ENSTBEG00000012771	SF3A1	100	75.879	Tupaia_belangeri
ENSDARG00000041887	sf3a1	97	84.115	ENSTTRG00000001535	SF3A1	100	81.932	Tursiops_truncatus
ENSDARG00000041887	sf3a1	99	81.772	ENSUAMG00000006750	SF3A1	99	81.392	Ursus_americanus
ENSDARG00000041887	sf3a1	100	83.355	ENSUMAG00000016665	SF3A1	98	84.031	Ursus_maritimus
ENSDARG00000041887	sf3a1	97	84.615	ENSVVUG00000003075	SF3A1	100	82.286	Vulpes_vulpes
ENSDARG00000041887	sf3a1	100	81.461	ENSXETG00000016144	sf3a1	96	86.585	Xenopus_tropicalis
ENSDARG00000041887	sf3a1	100	88.701	ENSXCOG00000015653	sf3a1	100	85.678	Xiphophorus_couchianus
ENSDARG00000041887	sf3a1	100	89.266	ENSXMAG00000002753	sf3a1	100	85.932	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component