EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000042054 (Gene tree)
Gene ID
569690
Gene Symbol
zgc:171971
Alias
-
Full Name
zgc:171971
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
12160 bases
Position
chr12:7268392-7280551
Accession
ZDB-GENE-070928-37
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000061632RNA_pol_Rpc4PF05132.143e-2711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000061633-2013XM_017358477ENSDARP00000061632390 (aa)XP_017213966F1QUC8
Gene Model
Click here to download ENSDARG00000042054's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000042054's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000042054zgc:1719719040.741ENSDARG00000104516polr3d9641.935
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000042054zgc:1719719543.003ENSG00000168495POLR3D9548.305Homo_sapiens
ENSDARG00000042054zgc:1719719141.067ENSAPOG00000012197polr3d9541.351Acanthochromis_polyacanthus
ENSDARG00000042054zgc:1719719252.618ENSAPOG00000017634zgc:1719719152.880Acanthochromis_polyacanthus
ENSDARG00000042054zgc:1719719542.327ENSAMEG00000003221POLR3D9843.182Ailuropoda_melanoleuca
ENSDARG00000042054zgc:1719718951.515ENSACIG00000003707zgc:1719719749.495Amphilophus_citrinellus
ENSDARG00000042054zgc:1719718641.972ENSACIG00000017832polr3d9142.493Amphilophus_citrinellus
ENSDARG00000042054zgc:1719719139.459ENSAOCG00000005037polr3d9440.217Amphiprion_ocellaris
ENSDARG00000042054zgc:1719719253.646ENSAOCG00000007733zgc:1719719853.448Amphiprion_ocellaris
ENSDARG00000042054zgc:1719719141.019ENSAPEG00000013751polr3d9540.761Amphiprion_percula
ENSDARG00000042054zgc:1719719153.439ENSAPEG00000016107zgc:1719719853.448Amphiprion_percula
ENSDARG00000042054zgc:1719719640.665ENSATEG00000023119polr3d9940.665Anabas_testudineus
ENSDARG00000042054zgc:1719719250.400ENSATEG00000023125zgc:1719719849.622Anabas_testudineus
ENSDARG00000042054zgc:1719718240.643ENSAPLG00000014393POLR3D9939.474Anas_platyrhynchos
ENSDARG00000042054zgc:1719718340.625ENSACAG00000010592POLR3D9241.226Anolis_carolinensis
ENSDARG00000042054zgc:1719719542.640ENSANAG00000030023POLR3D9843.147Aotus_nancymaae
ENSDARG00000042054zgc:1719719752.911ENSACLG00000000074zgc:1719719852.926Astatotilapia_calliptera
ENSDARG00000042054zgc:1719718641.193ENSACLG00000010147polr3d9041.193Astatotilapia_calliptera
ENSDARG00000042054zgc:1719719868.241ENSAMXG00000019418zgc:1719719968.766Astyanax_mexicanus
ENSDARG00000042054zgc:1719718640.548ENSAMXG00000010079polr3d9140.157Astyanax_mexicanus
ENSDARG00000042054zgc:1719719543.655ENSBTAG00000010036POLR3D9843.655Bos_taurus
ENSDARG00000042054zgc:1719719542.893ENSCJAG00000020278POLR3D9143.147Callithrix_jacchus
ENSDARG00000042054zgc:1719719543.182ENSCAFG00000009455POLR3D9843.687Canis_familiaris
ENSDARG00000042054zgc:1719719543.182ENSCAFG00020013027POLR3D9843.687Canis_lupus_dingo
ENSDARG00000042054zgc:1719719543.147ENSCHIG00000012279POLR3D9843.147Capra_hircus
ENSDARG00000042054zgc:1719719542.640ENSTSYG00000009055POLR3D9843.147Carlito_syrichta
ENSDARG00000042054zgc:1719718341.954ENSCAPG00000010394POLR3D9742.241Cavia_aperea
ENSDARG00000042054zgc:1719719542.785ENSCPOG00000003679POLR3D9843.182Cavia_porcellus
ENSDARG00000042054zgc:1719719543.147ENSCCAG00000019817POLR3D9843.401Cebus_capucinus
ENSDARG00000042054zgc:1719719543.878ENSCATG00000025950POLR3D9843.878Cercocebus_atys
ENSDARG00000042054zgc:1719719542.893ENSCLAG00000014993POLR3D9843.401Chinchilla_lanigera
ENSDARG00000042054zgc:1719719543.622ENSCSAG00000016525POLR3D9843.622Chlorocebus_sabaeus
ENSDARG00000042054zgc:1719719538.579ENSCHOG00000000228POLR3D9839.340Choloepus_hoffmanni
ENSDARG00000042054zgc:1719719641.103ENSCPBG00000001313POLR3D9941.103Chrysemys_picta_bellii
ENSDARG00000042054zgc:1719718633.708ENSCING00000008141-8933.708Ciona_intestinalis
ENSDARG00000042054zgc:1719718633.429ENSCSAVG00000007119-8833.143Ciona_savignyi
ENSDARG00000042054zgc:1719719543.544ENSCANG00000043589POLR3D9843.544Colobus_angolensis_palliatus
ENSDARG00000042054zgc:1719719542.893ENSCGRG00001010339Polr3d9843.401Cricetulus_griseus_chok1gshd
ENSDARG00000042054zgc:1719719542.893ENSCGRG00000003956Polr3d9843.401Cricetulus_griseus_crigri
ENSDARG00000042054zgc:1719719750.131ENSCSEG00000015509zgc:1719719849.347Cynoglossus_semilaevis
ENSDARG00000042054zgc:1719718641.761ENSCSEG00000008123polr3d9040.857Cynoglossus_semilaevis
ENSDARG00000042054zgc:1719719140.921ENSCVAG00000020687polr3d9540.872Cyprinodon_variegatus
ENSDARG00000042054zgc:1719718842.980ENSCVAG00000009078-9143.266Cyprinodon_variegatus
ENSDARG00000042054zgc:1719719541.117ENSDNOG00000013488POLR3D9842.132Dasypus_novemcinctus
ENSDARG00000042054zgc:1719719542.748ENSDORG00000011174Polr3d9843.257Dipodomys_ordii
ENSDARG00000042054zgc:1719719541.772ENSETEG00000016516POLR3D9842.025Echinops_telfairi
ENSDARG00000042054zgc:1719717135.987ENSEBUG00000014414polr3d9035.350Eptatretus_burgeri
ENSDARG00000042054zgc:1719719541.624ENSEASG00005018824POLR3D9841.878Equus_asinus_asinus
ENSDARG00000042054zgc:1719719542.640ENSECAG00000025090-9842.893Equus_caballus
ENSDARG00000042054zgc:1719719542.677ENSEEUG00000007632POLR3D9842.893Erinaceus_europaeus
ENSDARG00000042054zgc:1719718641.873ENSELUG00000016978polr3d9839.899Esox_lucius
ENSDARG00000042054zgc:1719719959.398ENSELUG00000017642zgc:1719719959.398Esox_lucius
ENSDARG00000042054zgc:1719719543.003ENSFCAG00000005346POLR3D9843.766Felis_catus
ENSDARG00000042054zgc:1719718241.716ENSFALG00000010907POLR3D9941.716Ficedula_albicollis
ENSDARG00000042054zgc:1719719543.073ENSFDAG00000010144POLR3D9843.401Fukomys_damarensis
ENSDARG00000042054zgc:1719718942.582ENSFHEG00000000508polr3d9242.265Fundulus_heteroclitus
ENSDARG00000042054zgc:1719718746.045ENSFHEG00000003803-8846.045Fundulus_heteroclitus
ENSDARG00000042054zgc:1719718640.960ENSGMOG00000006293polr3d9640.960Gadus_morhua
ENSDARG00000042054zgc:1719719746.875ENSGMOG00000015819zgc:1719719948.177Gadus_morhua
ENSDARG00000042054zgc:1719718339.650ENSGALG00000032501-5941.892Gallus_gallus
ENSDARG00000042054zgc:1719718748.451ENSGAFG00000009259zgc:1719718848.451Gambusia_affinis
ENSDARG00000042054zgc:1719719639.541ENSGAFG00000010268polr3d9939.796Gambusia_affinis
ENSDARG00000042054zgc:1719719049.871ENSGACG00000015436zgc:1719719449.746Gasterosteus_aculeatus
ENSDARG00000042054zgc:1719719640.657ENSGACG00000011126polr3d9940.955Gasterosteus_aculeatus
ENSDARG00000042054zgc:1719719641.604ENSGAGG00000023229POLR3D9941.604Gopherus_agassizii
ENSDARG00000042054zgc:1719719543.003ENSGGOG00000007302POLR3D9843.511Gorilla_gorilla
ENSDARG00000042054zgc:1719719753.061ENSHBUG00000020493zgc:1719719853.061Haplochromis_burtoni
ENSDARG00000042054zgc:1719718641.193ENSHBUG00000012288polr3d9041.193Haplochromis_burtoni
ENSDARG00000042054zgc:1719719542.711ENSHGLG00000015415POLR3D9842.711Heterocephalus_glaber_female
ENSDARG00000042054zgc:1719719542.711ENSHGLG00100014950POLR3D9842.711Heterocephalus_glaber_male
ENSDARG00000042054zgc:1719719640.921ENSHCOG00000002228polr3d9940.360Hippocampus_comes
ENSDARG00000042054zgc:1719718645.634ENSHCOG00000018819-9743.544Hippocampus_comes
ENSDARG00000042054zgc:1719719639.563ENSIPUG00000003480polr3d9939.801Ictalurus_punctatus
ENSDARG00000042054zgc:1719719765.263ENSIPUG00000008608zgc:1719719866.053Ictalurus_punctatus
ENSDARG00000042054zgc:1719719542.394ENSSTOG00000016519POLR3D9842.893Ictidomys_tridecemlineatus
ENSDARG00000042054zgc:1719719541.730ENSJJAG00000006743Polr3d9842.239Jaculus_jaculus
ENSDARG00000042054zgc:1719719738.832ENSKMAG00000005145polr3d9940.102Kryptolebias_marmoratus
ENSDARG00000042054zgc:1719719053.134ENSLBEG00000009545zgc:1719719153.134Labrus_bergylta
ENSDARG00000042054zgc:1719718939.945ENSLBEG00000003430polr3d9339.669Labrus_bergylta
ENSDARG00000042054zgc:1719719444.416ENSLACG00000016654POLR3D9844.416Latimeria_chalumnae
ENSDARG00000042054zgc:1719718942.597ENSLOCG00000016080polr3d9542.037Lepisosteus_oculatus
ENSDARG00000042054zgc:1719719860.668ENSLOCG00000006467zgc:17197110060.925Lepisosteus_oculatus
ENSDARG00000042054zgc:1719719542.386ENSLAFG00000001562POLR3D9842.640Loxodonta_africana
ENSDARG00000042054zgc:1719719543.878ENSMFAG00000029141POLR3D9843.878Macaca_fascicularis
ENSDARG00000042054zgc:1719719543.878ENSMMUG00000023226POLR3D9843.878Macaca_mulatta
ENSDARG00000042054zgc:1719719543.878ENSMNEG00000039410POLR3D9843.878Macaca_nemestrina
ENSDARG00000042054zgc:1719719543.878ENSMLEG00000031413POLR3D9843.878Mandrillus_leucophaeus
ENSDARG00000042054zgc:1719719050.543ENSMAMG00000020617zgc:1719719748.843Mastacembelus_armatus
ENSDARG00000042054zgc:1719719039.889ENSMAMG00000008914polr3d9939.487Mastacembelus_armatus
ENSDARG00000042054zgc:1719718641.193ENSMZEG00005011442polr3d9041.193Maylandia_zebra
ENSDARG00000042054zgc:1719719752.911ENSMZEG00005003175zgc:1719719852.926Maylandia_zebra
ENSDARG00000042054zgc:1719719542.640ENSMAUG00000006844Polr3d9843.147Mesocricetus_auratus
ENSDARG00000042054zgc:1719719542.289ENSMICG00000001049POLR3D9843.038Microcebus_murinus
ENSDARG00000042054zgc:1719719542.893ENSMOCG00000005195Polr3d9842.893Microtus_ochrogaster
ENSDARG00000042054zgc:1719719739.848ENSMMOG00000013845polr3d9940.000Mola_mola
ENSDARG00000042054zgc:1719718942.781ENSMODG00000009491POLR3D9642.781Monodelphis_domestica
ENSDARG00000042054zgc:1719719750.000ENSMALG00000005659zgc:1719719849.492Monopterus_albus
ENSDARG00000042054zgc:1719719639.898ENSMALG00000002928polr3d9939.898Monopterus_albus
ENSDARG00000042054zgc:1719719542.785MGP_CAROLIEiJ_G0019481Polr3d9843.147Mus_caroli
ENSDARG00000042054zgc:1719719542.785ENSMUSG00000000776Polr3d9843.147Mus_musculus
ENSDARG00000042054zgc:1719719540.050MGP_PahariEiJ_G0030498Polr3d9840.100Mus_pahari
ENSDARG00000042054zgc:1719719543.038MGP_SPRETEiJ_G0020373Polr3d9843.401Mus_spretus
ENSDARG00000042054zgc:1719719543.073ENSMPUG00000003653POLR3D9843.797Mustela_putorius_furo
ENSDARG00000042054zgc:1719719542.172ENSMLUG00000002109POLR3D9842.677Myotis_lucifugus
ENSDARG00000042054zgc:1719719543.147ENSNGAG00000013872Polr3d9843.147Nannospalax_galili
ENSDARG00000042054zgc:1719718641.193ENSNBRG00000019106polr3d9040.169Neolamprologus_brichardi
ENSDARG00000042054zgc:1719719048.066ENSNBRG00000022951zgc:1719719348.169Neolamprologus_brichardi
ENSDARG00000042054zgc:1719719543.467ENSMEUG00000000465POLR3D9843.467Notamacropus_eugenii
ENSDARG00000042054zgc:1719719543.038ENSOPRG00000013146POLR3D9843.544Ochotona_princeps
ENSDARG00000042054zgc:1719719543.434ENSODEG00000005884POLR3D9844.192Octodon_degus
ENSDARG00000042054zgc:1719719753.299ENSONIG00000007280zgc:1719719853.046Oreochromis_niloticus
ENSDARG00000042054zgc:1719719639.848ENSONIG00000010634polr3d9041.193Oreochromis_niloticus
ENSDARG00000042054zgc:1719718640.947ENSOANG00000010776POLR3D9042.061Ornithorhynchus_anatinus
ENSDARG00000042054zgc:1719719542.677ENSOCUG00000017410POLR3D9843.038Oryctolagus_cuniculus
ENSDARG00000042054zgc:1719719641.582ENSORLG00000011583polr3d9842.257Oryzias_latipes
ENSDARG00000042054zgc:1719719641.371ENSORLG00020005668polr3d9940.863Oryzias_latipes_hni
ENSDARG00000042054zgc:1719719640.409ENSORLG00015020291polr3d9939.386Oryzias_latipes_hsok
ENSDARG00000042054zgc:1719719141.779ENSOMEG00000010120polr3d9940.201Oryzias_melastigma
ENSDARG00000042054zgc:1719719543.038ENSOGAG00000004912POLR3D9843.401Otolemur_garnettii
ENSDARG00000042054zgc:1719719842.615ENSOARG00000010372-8242.615Ovis_aries
ENSDARG00000042054zgc:1719716934.164ENSOARG00000009142-9834.164Ovis_aries
ENSDARG00000042054zgc:1719719543.003ENSPPAG00000029591POLR3D9843.511Pan_paniscus
ENSDARG00000042054zgc:1719719543.003ENSPPRG00000022827POLR3D9843.766Panthera_pardus
ENSDARG00000042054zgc:1719719543.003ENSPTIG00000018239POLR3D9843.766Panthera_tigris_altaica
ENSDARG00000042054zgc:1719719543.003ENSPTRG00000020056POLR3D9843.511Pan_troglodytes
ENSDARG00000042054zgc:1719719543.878ENSPANG00000009440POLR3D9843.878Papio_anubis
ENSDARG00000042054zgc:1719719862.148ENSPKIG00000025283zgc:1719719862.148Paramormyrops_kingsleyae
ENSDARG00000042054zgc:1719718641.033ENSPKIG00000006727polr3d9140.710Paramormyrops_kingsleyae
ENSDARG00000042054zgc:1719719639.152ENSPSIG00000006113POLR3D9839.250Pelodiscus_sinensis
ENSDARG00000042054zgc:1719719639.695ENSPMGG00000021658polr3d9940.204Periophthalmus_magnuspinnatus
ENSDARG00000042054zgc:1719719543.182ENSPEMG00000023314Polr3d9843.939Peromyscus_maniculatus_bairdii
ENSDARG00000042054zgc:1719718940.152ENSPMAG00000001455polr3d9441.103Petromyzon_marinus
ENSDARG00000042054zgc:1719719542.211ENSPCIG00000012699POLR3D9842.714Phascolarctos_cinereus
ENSDARG00000042054zgc:1719718747.324ENSPFOG00000011089zgc:1719718847.324Poecilia_formosa
ENSDARG00000042054zgc:1719719638.520ENSPFOG00000012698polr3d9939.541Poecilia_formosa
ENSDARG00000042054zgc:1719719638.520ENSPLAG00000008149polr3d9939.541Poecilia_latipinna
ENSDARG00000042054zgc:1719718942.700ENSPLAG00000003645zgc:1719718842.700Poecilia_latipinna
ENSDARG00000042054zgc:1719718746.721ENSPMEG00000016953zgc:1719718846.721Poecilia_mexicana
ENSDARG00000042054zgc:1719719638.931ENSPMEG00000002702polr3d9939.440Poecilia_mexicana
ENSDARG00000042054zgc:1719718746.721ENSPREG00000003755-8846.721Poecilia_reticulata
ENSDARG00000042054zgc:1719719439.348ENSPREG00000007593polr3d9840.568Poecilia_reticulata
ENSDARG00000042054zgc:1719719543.003ENSPPYG00000018419POLR3D9843.766Pongo_abelii
ENSDARG00000042054zgc:1719719538.734ENSPCAG00000001971POLR3D9839.241Procavia_capensis
ENSDARG00000042054zgc:1719719542.680ENSPCOG00000028134POLR3D9843.434Propithecus_coquereli
ENSDARG00000042054zgc:1719719543.291ENSPVAG00000009873POLR3D9843.511Pteropus_vampyrus
ENSDARG00000042054zgc:1719719848.101ENSPNYG00000008902zgc:1719719848.101Pundamilia_nyererei
ENSDARG00000042054zgc:1719718640.909ENSPNYG00000016306polr3d9040.909Pundamilia_nyererei
ENSDARG00000042054zgc:1719719969.767ENSPNAG00000018934zgc:1719719970.284Pygocentrus_nattereri
ENSDARG00000042054zgc:1719718940.576ENSPNAG00000022324polr3d9939.401Pygocentrus_nattereri
ENSDARG00000042054zgc:1719719542.785ENSRNOG00000010028Polr3d9843.291Rattus_norvegicus
ENSDARG00000042054zgc:1719719542.857ENSRBIG00000035406POLR3D9842.857Rhinopithecus_bieti
ENSDARG00000042054zgc:1719719542.857ENSRROG00000037278POLR3D9842.857Rhinopithecus_roxellana
ENSDARG00000042054zgc:1719719543.147ENSSBOG00000024956POLR3D9843.401Saimiri_boliviensis_boliviensis
ENSDARG00000042054zgc:1719718241.520ENSSHAG00000018257POLR3D9941.520Sarcophilus_harrisii
ENSDARG00000042054zgc:1719718462.874ENSSFOG00015011547zgc:1719719363.174Scleropages_formosus
ENSDARG00000042054zgc:1719719240.806ENSSFOG00015010611polr3d9340.506Scleropages_formosus
ENSDARG00000042054zgc:1719719639.848ENSSMAG00000006271polr3d9939.541Scophthalmus_maximus
ENSDARG00000042054zgc:1719719749.492ENSSMAG00000001465zgc:1719719849.492Scophthalmus_maximus
ENSDARG00000042054zgc:1719719750.877ENSSDUG00000016019zgc:1719719053.425Seriola_dumerili
ENSDARG00000042054zgc:1719719639.440ENSSDUG00000020718polr3d9939.130Seriola_dumerili
ENSDARG00000042054zgc:1719718953.022ENSSLDG00000015968zgc:1719719052.446Seriola_lalandi_dorsalis
ENSDARG00000042054zgc:1719719639.695ENSSLDG00000009643polr3d9939.130Seriola_lalandi_dorsalis
ENSDARG00000042054zgc:1719719540.102ENSSARG00000012844POLR3D9840.609Sorex_araneus
ENSDARG00000042054zgc:1719719642.677ENSSPUG00000000719POLR3D9942.677Sphenodon_punctatus
ENSDARG00000042054zgc:1719719750.384ENSSPAG00000010384zgc:1719719849.872Stegastes_partitus
ENSDARG00000042054zgc:1719719141.333ENSSPAG00000023326polr3d9540.761Stegastes_partitus
ENSDARG00000042054zgc:1719719542.278ENSSSCG00000009622POLR3D9842.677Sus_scrofa
ENSDARG00000042054zgc:1719719040.437ENSTRUG00000003555polr3d9939.695Takifugu_rubripes
ENSDARG00000042054zgc:1719718640.113ENSTNIG00000006282polr3d9139.773Tetraodon_nigroviridis
ENSDARG00000042054zgc:1719719542.640ENSTTRG00000012745POLR3D9842.893Tursiops_truncatus
ENSDARG00000042054zgc:1719718640.379ENSUAMG00000026868POLR3D9740.997Ursus_americanus
ENSDARG00000042054zgc:1719719543.182ENSUMAG00000005099POLR3D9843.434Ursus_maritimus
ENSDARG00000042054zgc:1719719543.182ENSVVUG00000005290POLR3D9843.687Vulpes_vulpes
ENSDARG00000042054zgc:1719719043.122ENSXETG00000010534polr3d9442.400Xenopus_tropicalis
ENSDARG00000042054zgc:1719719639.948ENSXCOG00000015872polr3d9940.209Xiphophorus_couchianus
ENSDARG00000042054zgc:1719719639.286ENSXMAG00000001872polr3d9939.541Xiphophorus_maculatus
ENSDARG00000042054zgc:1719718747.293ENSXMAG00000014555-8847.293Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001056RNA polymerase III activity21873635.IBAFunction
GO:0003677DNA binding-IEAFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity-IEAFunction
GO:0005666RNA polymerase III complex21873635.IBAComponent
GO:0005666RNA polymerase III complex-IEAComponent
GO:0006383transcription by RNA polymerase III-IEAProcess

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