EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000042252 (Gene tree)
Gene ID: 402996
Gene Symbol: eif4h
Alias: wbscr1|zgc:77282
Full Name: eukaryotic translation initiation factor 4h
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 31663 bases
Position: chr15:4585266-4616928
Accession: ZDB-GENE-010328-19
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130536	RRM_1	PF00076.22	3e-13	1	1
ENSDARP00000117924	RRM_1	PF00076.22	4.5e-13	1	1
ENSDARP00000131876	RRM_1	PF00076.22	4.8e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000144949	-	2440	-	ENSDARP00000117924	256 (aa)	-	F1QYM4
ENSDART00000161721	-	2046	-	ENSDARP00000130536	207 (aa)	-	A0A0R4ICV9
ENSDART00000132227	-	877	-	ENSDARP00000119123	125 (aa)	-	F1R2E7
ENSDART00000160191	-	2211	XM_009291449	ENSDARP00000131876	262 (aa)	XP_009289724	A0A0R4IG09

Gene Model

Click here to download ENSDARG00000042252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000042252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000042252	eif4h	99	75.097	ENSG00000106682	EIF4H	84	67.421	Homo_sapiens
ENSDARG00000042252	eif4h	60	84.000	ENSAPOG00000011382	eif4h	51	87.234	Acanthochromis_polyacanthus
ENSDARG00000042252	eif4h	99	70.638	ENSACIG00000021024	eif4h	92	74.528	Amphilophus_citrinellus
ENSDARG00000042252	eif4h	99	73.946	ENSAOCG00000003041	eif4h	89	71.186	Amphiprion_ocellaris
ENSDARG00000042252	eif4h	99	73.946	ENSAPEG00000022702	eif4h	89	71.186	Amphiprion_percula
ENSDARG00000042252	eif4h	99	68.750	ENSATEG00000000604	eif4h	82	62.780	Anabas_testudineus
ENSDARG00000042252	eif4h	87	75.771	ENSAPLG00000009166	EIF4H	86	69.820	Anas_platyrhynchos
ENSDARG00000042252	eif4h	99	77.606	ENSACAG00000000612	EIF4H	85	68.468	Anolis_carolinensis
ENSDARG00000042252	eif4h	100	70.464	ENSACLG00000010457	eif4h	85	73.094	Astatotilapia_calliptera
ENSDARG00000042252	eif4h	95	87.603	ENSAMXG00000043588	eif4h	95	85.246	Astyanax_mexicanus
ENSDARG00000042252	eif4h	99	71.705	ENSCAFG00000012019	EIF4H	83	67.421	Canis_familiaris
ENSDARG00000042252	eif4h	91	75.641	ENSTSYG00000006807	EIF4H	89	66.968	Carlito_syrichta
ENSDARG00000042252	eif4h	99	74.708	ENSCCAG00000034098	EIF4H	84	66.968	Cebus_capucinus
ENSDARG00000042252	eif4h	99	74.708	ENSCATG00000032948	-	90	66.968	Cercocebus_atys
ENSDARG00000042252	eif4h	91	74.786	ENSCLAG00000012003	EIF4H	86	66.063	Chinchilla_lanigera
ENSDARG00000042252	eif4h	91	75.641	ENSCHOG00000002525	EIF4H	92	66.968	Choloepus_hoffmanni
ENSDARG00000042252	eif4h	100	74.809	ENSCPBG00000027695	EIF4H	87	68.610	Chrysemys_picta_bellii
ENSDARG00000042252	eif4h	87	47.345	ENSCING00000007181	-	86	43.860	Ciona_intestinalis
ENSDARG00000042252	eif4h	95	73.061	ENSCANG00000005409	-	87	66.968	Colobus_angolensis_palliatus
ENSDARG00000042252	eif4h	79	64.878	ENSCANG00000033751	-	89	60.000	Colobus_angolensis_palliatus
ENSDARG00000042252	eif4h	99	75.097	ENSCGRG00001000916	Eif4h	84	66.516	Cricetulus_griseus_chok1gshd
ENSDARG00000042252	eif4h	91	75.214	ENSCGRG00000002277	Eif4h	92	66.516	Cricetulus_griseus_crigri
ENSDARG00000042252	eif4h	88	75.104	ENSCSEG00000016175	eif4h	87	70.711	Cynoglossus_semilaevis
ENSDARG00000042252	eif4h	100	75.479	ENSCVAG00000021728	eif4h	97	74.699	Cyprinodon_variegatus
ENSDARG00000042252	eif4h	99	75.486	ENSDNOG00000049674	EIF4H	84	66.968	Dasypus_novemcinctus
ENSDARG00000042252	eif4h	91	75.214	ENSDORG00000008131	Eif4h	92	66.516	Dipodomys_ordii
ENSDARG00000042252	eif4h	99	75.097	ENSECAG00000017832	EIF4H	53	63.235	Equus_caballus
ENSDARG00000042252	eif4h	87	73.778	ENSELUG00000017026	eif4h	79	76.682	Esox_lucius
ENSDARG00000042252	eif4h	99	75.486	ENSFCAG00000029386	EIF4H	84	66.968	Felis_catus
ENSDARG00000042252	eif4h	99	74.131	ENSFALG00000007155	EIF4H	86	68.398	Ficedula_albicollis
ENSDARG00000042252	eif4h	99	74.708	ENSFDAG00000006814	-	84	68.919	Fukomys_damarensis
ENSDARG00000042252	eif4h	99	66.364	ENSFDAG00000008915	-	85	67.935	Fukomys_damarensis
ENSDARG00000042252	eif4h	96	66.534	ENSFHEG00000020694	eif4h	65	65.596	Fundulus_heteroclitus
ENSDARG00000042252	eif4h	89	78.261	ENSGMOG00000009571	eif4h	93	77.232	Gadus_morhua
ENSDARG00000042252	eif4h	99	75.969	ENSGALG00000001313	EIF4H	86	69.369	Gallus_gallus
ENSDARG00000042252	eif4h	99	75.294	ENSGAFG00000018555	eif4h	94	75.309	Gambusia_affinis
ENSDARG00000042252	eif4h	99	79.848	ENSGACG00000004504	eif4h	85	76.856	Gasterosteus_aculeatus
ENSDARG00000042252	eif4h	100	74.809	ENSGAGG00000024376	EIF4H	87	68.610	Gopherus_agassizii
ENSDARG00000042252	eif4h	99	74.708	ENSGGOG00000005284	EIF4H	90	67.421	Gorilla_gorilla
ENSDARG00000042252	eif4h	100	81.992	ENSHBUG00000016482	eif4h	87	78.947	Haplochromis_burtoni
ENSDARG00000042252	eif4h	99	52.535	ENSHGLG00000006693	-	89	51.832	Heterocephalus_glaber_female
ENSDARG00000042252	eif4h	99	74.708	ENSHGLG00000014914	EIF4H	84	66.516	Heterocephalus_glaber_female
ENSDARG00000042252	eif4h	91	74.786	ENSHGLG00100003157	-	89	68.919	Heterocephalus_glaber_male
ENSDARG00000042252	eif4h	99	52.535	ENSHGLG00100013834	-	89	51.832	Heterocephalus_glaber_male
ENSDARG00000042252	eif4h	87	75.676	ENSHCOG00000006653	eif4h	86	73.874	Hippocampus_comes
ENSDARG00000042252	eif4h	100	87.209	ENSIPUG00000020402	eif4h	88	83.111	Ictalurus_punctatus
ENSDARG00000042252	eif4h	86	77.130	ENSSTOG00000020777	EIF4H	92	66.968	Ictidomys_tridecemlineatus
ENSDARG00000042252	eif4h	99	80.695	ENSKMAG00000001866	eif4h	87	81.416	Kryptolebias_marmoratus
ENSDARG00000042252	eif4h	99	70.221	ENSLACG00000018610	EIF4H	84	77.027	Latimeria_chalumnae
ENSDARG00000042252	eif4h	87	80.973	ENSLOCG00000000875	eif4h	84	78.761	Lepisosteus_oculatus
ENSDARG00000042252	eif4h	99	74.708	ENSMFAG00000031975	EIF4H	90	66.968	Macaca_fascicularis
ENSDARG00000042252	eif4h	99	74.708	ENSMMUG00000006205	EIF4H	90	66.968	Macaca_mulatta
ENSDARG00000042252	eif4h	99	74.708	ENSMNEG00000044792	-	90	66.968	Macaca_nemestrina
ENSDARG00000042252	eif4h	99	65.759	ENSMLEG00000021068	-	87	62.441	Mandrillus_leucophaeus
ENSDARG00000042252	eif4h	92	73.950	ENSMLEG00000031453	-	90	66.968	Mandrillus_leucophaeus
ENSDARG00000042252	eif4h	100	79.615	ENSMAMG00000019170	eif4h	78	78.414	Mastacembelus_armatus
ENSDARG00000042252	eif4h	100	81.538	ENSMZEG00005022684	eif4h	87	78.414	Maylandia_zebra
ENSDARG00000042252	eif4h	92	82.632	ENSMZEG00005000560	-	83	83.439	Maylandia_zebra
ENSDARG00000042252	eif4h	91	75.319	ENSMGAG00000002508	EIF4H	93	69.369	Meleagris_gallopavo
ENSDARG00000042252	eif4h	99	57.767	ENSMAUG00000000548	Eif4h	70	92.308	Mesocricetus_auratus
ENSDARG00000042252	eif4h	99	75.486	ENSMICG00000010204	EIF4H	84	66.968	Microcebus_murinus
ENSDARG00000042252	eif4h	99	75.097	ENSMOCG00000003802	Eif4h	84	69.369	Microtus_ochrogaster
ENSDARG00000042252	eif4h	94	68.699	ENSMMOG00000009312	eif4h	80	66.990	Mola_mola
ENSDARG00000042252	eif4h	99	73.930	ENSMODG00000013851	EIF4H	55	70.721	Monodelphis_domestica
ENSDARG00000042252	eif4h	99	80.534	ENSMALG00000000803	eif4h	85	75.330	Monopterus_albus
ENSDARG00000042252	eif4h	99	75.097	MGP_CAROLIEiJ_G0027816	Eif4h	84	66.516	Mus_caroli
ENSDARG00000042252	eif4h	99	75.097	ENSMUSG00000040731	Eif4h	84	66.516	Mus_musculus
ENSDARG00000042252	eif4h	99	75.097	MGP_SPRETEiJ_G0028814	Eif4h	84	66.516	Mus_spretus
ENSDARG00000042252	eif4h	99	74.708	ENSNGAG00000000522	Eif4h	84	66.063	Nannospalax_galili
ENSDARG00000042252	eif4h	100	81.413	ENSNBRG00000021071	eif4h	87	77.119	Neolamprologus_brichardi
ENSDARG00000042252	eif4h	99	70.817	ENSNLEG00000008838	EIF4H	90	67.421	Nomascus_leucogenys
ENSDARG00000042252	eif4h	91	73.932	ENSMEUG00000000254	EIF4H	92	70.721	Notamacropus_eugenii
ENSDARG00000042252	eif4h	94	62.437	ENSODEG00000006855	-	79	61.350	Octodon_degus
ENSDARG00000042252	eif4h	88	61.233	ENSODEG00000019011	-	88	59.686	Octodon_degus
ENSDARG00000042252	eif4h	99	74.708	ENSODEG00000015854	-	87	66.063	Octodon_degus
ENSDARG00000042252	eif4h	99	66.079	ENSODEG00000008163	-	82	63.590	Octodon_degus
ENSDARG00000042252	eif4h	99	79.926	ENSONIG00000001042	eif4h	87	77.447	Oreochromis_niloticus
ENSDARG00000042252	eif4h	64	80.741	ENSOANG00000004334	EIF4H	61	95.238	Ornithorhynchus_anatinus
ENSDARG00000042252	eif4h	87	76.419	ENSORLG00000023059	eif4h	86	74.779	Oryzias_latipes
ENSDARG00000042252	eif4h	87	71.111	ENSORLG00015012124	eif4h	84	70.256	Oryzias_latipes_hsok
ENSDARG00000042252	eif4h	72	82.692	ENSOMEG00000017640	eif4h	58	89.623	Oryzias_melastigma
ENSDARG00000042252	eif4h	99	75.097	ENSOGAG00000028051	EIF4H	84	66.968	Otolemur_garnettii
ENSDARG00000042252	eif4h	91	75.214	ENSPPAG00000032449	-	92	67.421	Pan_paniscus
ENSDARG00000042252	eif4h	99	75.486	ENSPPRG00000010557	EIF4H	84	66.968	Panthera_pardus
ENSDARG00000042252	eif4h	91	75.641	ENSPTIG00000007636	EIF4H	84	66.968	Panthera_tigris_altaica
ENSDARG00000042252	eif4h	99	75.097	ENSPTRG00000019287	EIF4H	84	67.421	Pan_troglodytes
ENSDARG00000042252	eif4h	91	75.214	ENSPTRG00000046154	-	92	67.421	Pan_troglodytes
ENSDARG00000042252	eif4h	99	74.708	ENSPANG00000007491	-	89	66.968	Papio_anubis
ENSDARG00000042252	eif4h	99	63.281	ENSPANG00000016112	-	87	62.443	Papio_anubis
ENSDARG00000042252	eif4h	95	86.531	ENSPKIG00000011080	eif4h	95	82.787	Paramormyrops_kingsleyae
ENSDARG00000042252	eif4h	87	79.730	ENSPKIG00000015513	eif4h	84	81.081	Paramormyrops_kingsleyae
ENSDARG00000042252	eif4h	91	74.477	ENSPSIG00000014490	EIF4H	89	67.713	Pelodiscus_sinensis
ENSDARG00000042252	eif4h	95	71.429	ENSPMGG00000020983	eif4h	84	72.124	Periophthalmus_magnuspinnatus
ENSDARG00000042252	eif4h	99	75.097	ENSPEMG00000018422	Eif4h	84	66.516	Peromyscus_maniculatus_bairdii
ENSDARG00000042252	eif4h	99	73.930	ENSPCIG00000017251	EIF4H	91	70.721	Phascolarctos_cinereus
ENSDARG00000042252	eif4h	100	76.628	ENSPFOG00000004802	eif4h	97	77.912	Poecilia_formosa
ENSDARG00000042252	eif4h	100	77.481	ENSPLAG00000019336	eif4h	97	77.912	Poecilia_latipinna
ENSDARG00000042252	eif4h	100	76.628	ENSPMEG00000021959	eif4h	97	77.912	Poecilia_mexicana
ENSDARG00000042252	eif4h	84	69.863	ENSPREG00000002853	eif4h	75	71.196	Poecilia_reticulata
ENSDARG00000042252	eif4h	99	75.486	ENSPCOG00000024907	EIF4H	84	66.968	Propithecus_coquereli
ENSDARG00000042252	eif4h	99	75.097	ENSPVAG00000011008	EIF4H	84	66.516	Pteropus_vampyrus
ENSDARG00000042252	eif4h	100	70.464	ENSPNYG00000009769	eif4h	85	73.094	Pundamilia_nyererei
ENSDARG00000042252	eif4h	100	87.500	ENSPNAG00000001813	eif4h	87	80.717	Pygocentrus_nattereri
ENSDARG00000042252	eif4h	97	62.400	ENSRBIG00000041723	-	83	62.791	Rhinopithecus_bieti
ENSDARG00000042252	eif4h	91	74.359	ENSRBIG00000014939	-	92	66.516	Rhinopithecus_bieti
ENSDARG00000042252	eif4h	91	73.932	ENSSHAG00000000106	EIF4H	91	70.721	Sarcophilus_harrisii
ENSDARG00000042252	eif4h	99	85.156	ENSSFOG00015004902	eif4h	88	82.960	Scleropages_formosus
ENSDARG00000042252	eif4h	99	82.101	ENSSFOG00015008101	eif4h	85	80.180	Scleropages_formosus
ENSDARG00000042252	eif4h	99	68.929	ENSSMAG00000006068	-	87	67.500	Scophthalmus_maximus
ENSDARG00000042252	eif4h	100	83.396	ENSSDUG00000006476	eif4h	95	81.818	Seriola_dumerili
ENSDARG00000042252	eif4h	100	81.648	ENSSLDG00000000355	eif4h	96	80.784	Seriola_lalandi_dorsalis
ENSDARG00000042252	eif4h	99	76.834	ENSSPUG00000006402	EIF4H	87	71.111	Sphenodon_punctatus
ENSDARG00000042252	eif4h	99	78.113	ENSSPAG00000013718	eif4h	89	73.640	Stegastes_partitus
ENSDARG00000042252	eif4h	99	75.486	ENSSSCG00000025966	EIF4H	84	66.968	Sus_scrofa
ENSDARG00000042252	eif4h	99	71.815	ENSTGUG00000003901	EIF4H	86	70.667	Taeniopygia_guttata
ENSDARG00000042252	eif4h	95	73.622	ENSTRUG00000010290	eif4h	85	71.491	Takifugu_rubripes
ENSDARG00000042252	eif4h	95	69.650	ENSTNIG00000011234	eif4h	85	71.053	Tetraodon_nigroviridis
ENSDARG00000042252	eif4h	88	75.330	ENSTBEG00000009558	EIF4H	94	66.355	Tupaia_belangeri
ENSDARG00000042252	eif4h	75	78.205	ENSTTRG00000008737	EIF4H	54	92.857	Tursiops_truncatus
ENSDARG00000042252	eif4h	99	71.984	ENSVPAG00000006838	EIF4H	84	66.968	Vicugna_pacos
ENSDARG00000042252	eif4h	91	74.786	ENSVVUG00000024843	EIF4H	72	67.421	Vulpes_vulpes
ENSDARG00000042252	eif4h	100	70.428	ENSXETG00000018230	eif4h	85	65.919	Xenopus_tropicalis
ENSDARG00000042252	eif4h	99	79.216	ENSXMAG00000014333	eif4h	93	76.316	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001731	formation of translation preinitiation complex	21873635.	IBA	Process
GO:0002181	cytoplasmic translation	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0005844	polysome	21873635.	IBA	Component
GO:0033592	RNA strand annealing activity	21873635.	IBA	Function
GO:0034057	RNA strand-exchange activity	21873635.	IBA	Function
GO:0043024	ribosomal small subunit binding	21873635.	IBA	Function
GO:0097010	eukaryotic translation initiation factor 4F complex assembly	21873635.	IBA	Process