EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000042571 (Gene tree)
Gene ID: 436932
Gene Symbol: rnaseh1
Alias: zgc:91971
Full Name: ribonuclease H1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6768 bases
Position: chr20:30378803-30385570
Accession: ZDB-GENE-040718-407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000062440	RNase_H	PF00075.24	2.6e-44	1	1
ENSDARP00000140924	RNase_H	PF00075.24	2.6e-44	1	1
ENSDARP00000117677	RNase_H	PF00075.24	1.9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000169140	-	1117	-	ENSDARP00000140924	276 (aa)	-	Q6DG94
ENSDART00000153019	-	535	-	-	- (aa)	-	-
ENSDART00000148242	-	835	-	ENSDARP00000117677	241 (aa)	-	Q5TZA7
ENSDART00000062441	-	1281	-	ENSDARP00000062440	276 (aa)	-	Q6DG94

Gene Model

Click here to download ENSDARG00000042571's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000042571's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000042571	rnaseh1	96	52.941	ENSG00000171865	RNASEH1	89	52.941	Homo_sapiens
ENSDARG00000042571	rnaseh1	98	67.148	ENSAPOG00000000412	rnaseh1	90	67.509	Acanthochromis_polyacanthus
ENSDARG00000042571	rnaseh1	98	51.489	ENSAMEG00000018433	RNASEH1	89	53.383	Ailuropoda_melanoleuca
ENSDARG00000042571	rnaseh1	98	68.635	ENSACIG00000014666	rnaseh1	88	68.635	Amphilophus_citrinellus
ENSDARG00000042571	rnaseh1	98	67.148	ENSAOCG00000015210	rnaseh1	90	67.148	Amphiprion_ocellaris
ENSDARG00000042571	rnaseh1	98	67.509	ENSAPEG00000014104	rnaseh1	90	67.509	Amphiprion_percula
ENSDARG00000042571	rnaseh1	98	68.478	ENSATEG00000000598	rnaseh1	95	68.478	Anabas_testudineus
ENSDARG00000042571	rnaseh1	92	54.826	ENSAPLG00000001961	RNASEH1	100	54.826	Anas_platyrhynchos
ENSDARG00000042571	rnaseh1	97	50.825	ENSACAG00000016857	rnaseh1	91	50.825	Anolis_carolinensis
ENSDARG00000042571	rnaseh1	96	54.887	ENSANAG00000024055	RNASEH1	89	54.887	Aotus_nancymaae
ENSDARG00000042571	rnaseh1	98	66.426	ENSACLG00000006741	rnaseh1	89	66.787	Astatotilapia_calliptera
ENSDARG00000042571	rnaseh1	100	62.230	ENSAMXG00000042940	rnaseh1	100	62.230	Astyanax_mexicanus
ENSDARG00000042571	rnaseh1	97	54.851	ENSBTAG00000016235	RNASEH1	92	54.317	Bos_taurus
ENSDARG00000042571	rnaseh1	97	39.552	WBGene00004382	rnh-1.0	96	39.552	Caenorhabditis_elegans
ENSDARG00000042571	rnaseh1	96	52.963	ENSCJAG00000035450	RNASEH1	89	52.963	Callithrix_jacchus
ENSDARG00000042571	rnaseh1	98	54.043	ENSCAFG00000003259	RNASEH1	89	55.639	Canis_familiaris
ENSDARG00000042571	rnaseh1	55	66.225	ENSCAFG00020004994	RNASEH1	97	66.225	Canis_lupus_dingo
ENSDARG00000042571	rnaseh1	89	43.600	ENSCHIG00000022230	-	99	43.600	Capra_hircus
ENSDARG00000042571	rnaseh1	97	54.478	ENSCHIG00000022264	-	90	54.478	Capra_hircus
ENSDARG00000042571	rnaseh1	97	54.478	ENSTSYG00000012926	RNASEH1	89	54.478	Carlito_syrichta
ENSDARG00000042571	rnaseh1	91	54.762	ENSCAPG00000004813	RNASEH1	98	54.762	Cavia_aperea
ENSDARG00000042571	rnaseh1	97	54.815	ENSCPOG00000022278	Rnaseh1	87	54.815	Cavia_porcellus
ENSDARG00000042571	rnaseh1	96	53.506	ENSCCAG00000038017	RNASEH1	89	53.506	Cebus_capucinus
ENSDARG00000042571	rnaseh1	96	52.574	ENSCATG00000016515	-	89	52.574	Cercocebus_atys
ENSDARG00000042571	rnaseh1	97	48.519	ENSCATG00000016818	-	89	48.519	Cercocebus_atys
ENSDARG00000042571	rnaseh1	98	52.766	ENSCLAG00000002440	RNASEH1	89	54.717	Chinchilla_lanigera
ENSDARG00000042571	rnaseh1	98	50.847	ENSCSAG00000006943	RNASEH1	89	52.416	Chlorocebus_sabaeus
ENSDARG00000042571	rnaseh1	74	55.610	ENSCHOG00000008547	RNASEH1	97	55.610	Choloepus_hoffmanni
ENSDARG00000042571	rnaseh1	97	56.584	ENSCPBG00000021620	RNASEH1	99	56.584	Chrysemys_picta_bellii
ENSDARG00000042571	rnaseh1	97	38.628	ENSCING00000014054	-	92	38.628	Ciona_intestinalis
ENSDARG00000042571	rnaseh1	94	36.522	ENSCSAVG00000000009	-	96	36.522	Ciona_savignyi
ENSDARG00000042571	rnaseh1	98	51.464	ENSCANG00000037763	RNASEH1	89	52.788	Colobus_angolensis_palliatus
ENSDARG00000042571	rnaseh1	97	54.307	ENSCGRG00001008950	Rnaseh1	90	54.307	Cricetulus_griseus_chok1gshd
ENSDARG00000042571	rnaseh1	97	54.307	ENSCGRG00000006029	Rnaseh1	90	54.307	Cricetulus_griseus_crigri
ENSDARG00000042571	rnaseh1	99	62.637	ENSCSEG00000005741	rnaseh1	94	63.082	Cynoglossus_semilaevis
ENSDARG00000042571	rnaseh1	98	66.667	ENSCVAG00000018717	rnaseh1	89	66.667	Cyprinodon_variegatus
ENSDARG00000042571	rnaseh1	97	54.104	ENSDNOG00000016056	RNASEH1	90	54.104	Dasypus_novemcinctus
ENSDARG00000042571	rnaseh1	96	53.585	ENSDORG00000000704	Rnaseh1	89	53.585	Dipodomys_ordii
ENSDARG00000042571	rnaseh1	97	35.075	FBgn0023171	rnh1	92	35.762	Drosophila_melanogaster
ENSDARG00000042571	rnaseh1	97	53.160	ENSETEG00000012674	RNASEH1	89	53.160	Echinops_telfairi
ENSDARG00000042571	rnaseh1	96	43.493	ENSEBUG00000008898	rnaseh1	98	43.493	Eptatretus_burgeri
ENSDARG00000042571	rnaseh1	97	45.149	ENSEBUG00000006116	rnaseh1	78	45.149	Eptatretus_burgeri
ENSDARG00000042571	rnaseh1	98	52.083	ENSEASG00005022200	RNASEH1	88	53.506	Equus_asinus_asinus
ENSDARG00000042571	rnaseh1	98	52.083	ENSECAG00000020695	RNASEH1	88	53.506	Equus_caballus
ENSDARG00000042571	rnaseh1	98	66.544	ENSELUG00000010112	rnaseh1	91	66.544	Esox_lucius
ENSDARG00000042571	rnaseh1	96	55.094	ENSFCAG00000025832	RNASEH1	89	55.094	Felis_catus
ENSDARG00000042571	rnaseh1	99	56.890	ENSFALG00000002069	RNASEH1	95	55.830	Ficedula_albicollis
ENSDARG00000042571	rnaseh1	96	54.511	ENSFDAG00000002035	RNASEH1	79	54.511	Fukomys_damarensis
ENSDARG00000042571	rnaseh1	99	64.234	ENSGMOG00000013818	rnaseh1	91	64.234	Gadus_morhua
ENSDARG00000042571	rnaseh1	99	55.556	ENSGALG00000016389	RNASEH1	94	55.556	Gallus_gallus
ENSDARG00000042571	rnaseh1	98	66.058	ENSGAFG00000001776	rnaseh1	91	66.058	Gambusia_affinis
ENSDARG00000042571	rnaseh1	98	68.978	ENSGACG00000011935	rnaseh1	90	68.978	Gasterosteus_aculeatus
ENSDARG00000042571	rnaseh1	98	57.200	ENSGAGG00000009150	RNASEH1	62	58.865	Gopherus_agassizii
ENSDARG00000042571	rnaseh1	96	52.416	ENSGGOG00000034822	RNASEH1	89	52.416	Gorilla_gorilla
ENSDARG00000042571	rnaseh1	98	65.704	ENSHBUG00000004666	rnaseh1	89	66.065	Haplochromis_burtoni
ENSDARG00000042571	rnaseh1	96	53.933	ENSHGLG00000002585	Rnaseh1	82	53.933	Heterocephalus_glaber_female
ENSDARG00000042571	rnaseh1	96	53.933	ENSHGLG00100005105	Rnaseh1	82	53.933	Heterocephalus_glaber_male
ENSDARG00000042571	rnaseh1	98	64.493	ENSHCOG00000012329	rnaseh1	89	65.468	Hippocampus_comes
ENSDARG00000042571	rnaseh1	99	65.328	ENSIPUG00000023060	rnaseh1	99	65.328	Ictalurus_punctatus
ENSDARG00000042571	rnaseh1	96	55.056	ENSSTOG00000012774	RNASEH1	91	55.056	Ictidomys_tridecemlineatus
ENSDARG00000042571	rnaseh1	95	42.529	ENSJJAG00000008994	-	89	42.529	Jaculus_jaculus
ENSDARG00000042571	rnaseh1	97	49.064	ENSJJAG00000021481	-	89	49.064	Jaculus_jaculus
ENSDARG00000042571	rnaseh1	98	51.915	ENSJJAG00000020238	Rnaseh1	90	51.240	Jaculus_jaculus
ENSDARG00000042571	rnaseh1	98	66.667	ENSKMAG00000001373	rnaseh1	90	66.667	Kryptolebias_marmoratus
ENSDARG00000042571	rnaseh1	98	70.370	ENSLBEG00000004480	rnaseh1	97	70.741	Labrus_bergylta
ENSDARG00000042571	rnaseh1	98	57.348	ENSLACG00000007100	RNASEH1	90	57.706	Latimeria_chalumnae
ENSDARG00000042571	rnaseh1	98	62.545	ENSLOCG00000017212	rnaseh1	99	64.493	Lepisosteus_oculatus
ENSDARG00000042571	rnaseh1	96	54.135	ENSLAFG00000015091	RNASEH1	89	54.135	Loxodonta_africana
ENSDARG00000042571	rnaseh1	97	50.000	ENSMFAG00000002323	-	90	50.000	Macaca_fascicularis
ENSDARG00000042571	rnaseh1	96	52.941	ENSMFAG00000000063	-	89	52.941	Macaca_fascicularis
ENSDARG00000042571	rnaseh1	97	50.000	ENSMMUG00000019280	-	90	50.000	Macaca_mulatta
ENSDARG00000042571	rnaseh1	98	51.883	ENSMNEG00000040183	-	89	53.309	Macaca_nemestrina
ENSDARG00000042571	rnaseh1	97	50.000	ENSMNEG00000029676	-	90	50.000	Macaca_nemestrina
ENSDARG00000042571	rnaseh1	89	53.629	ENSMLEG00000039352	-	98	53.629	Mandrillus_leucophaeus
ENSDARG00000042571	rnaseh1	97	51.111	ENSMLEG00000028662	-	90	51.111	Mandrillus_leucophaeus
ENSDARG00000042571	rnaseh1	98	66.667	ENSMAMG00000019725	rnaseh1	95	66.667	Mastacembelus_armatus
ENSDARG00000042571	rnaseh1	98	66.426	ENSMZEG00005013006	rnaseh1	89	66.787	Maylandia_zebra
ENSDARG00000042571	rnaseh1	87	54.472	ENSMGAG00000013979	RNASEH1	99	54.472	Meleagris_gallopavo
ENSDARG00000042571	rnaseh1	97	52.190	ENSMAUG00000014957	Rnaseh1	90	52.190	Mesocricetus_auratus
ENSDARG00000042571	rnaseh1	96	56.226	ENSMICG00000033156	RNASEH1	88	56.226	Microcebus_murinus
ENSDARG00000042571	rnaseh1	97	53.558	ENSMOCG00000015522	Rnaseh1	90	53.558	Microtus_ochrogaster
ENSDARG00000042571	rnaseh1	98	66.667	ENSMMOG00000015902	rnaseh1	89	66.667	Mola_mola
ENSDARG00000042571	rnaseh1	86	48.536	ENSMODG00000028814	-	91	50.000	Monodelphis_domestica
ENSDARG00000042571	rnaseh1	97	52.612	ENSMODG00000014491	-	89	52.612	Monodelphis_domestica
ENSDARG00000042571	rnaseh1	98	66.545	ENSMALG00000010565	rnaseh1	90	66.545	Monopterus_albus
ENSDARG00000042571	rnaseh1	96	53.962	MGP_CAROLIEiJ_G0017660	Rnaseh1	89	53.962	Mus_caroli
ENSDARG00000042571	rnaseh1	96	53.962	ENSMUSG00000020630	Rnaseh1	89	53.962	Mus_musculus
ENSDARG00000042571	rnaseh1	96	52.830	MGP_PahariEiJ_G0029418	Rnaseh1	89	54.887	Mus_pahari
ENSDARG00000042571	rnaseh1	98	52.966	MGP_SPRETEiJ_G0018502	Rnaseh1	89	54.887	Mus_spretus
ENSDARG00000042571	rnaseh1	55	65.563	ENSMPUG00000012984	RNASEH1	73	65.563	Mustela_putorius_furo
ENSDARG00000042571	rnaseh1	96	53.759	ENSNGAG00000015966	Rnaseh1	84	53.759	Nannospalax_galili
ENSDARG00000042571	rnaseh1	98	65.704	ENSNBRG00000008739	rnaseh1	89	66.065	Neolamprologus_brichardi
ENSDARG00000042571	rnaseh1	99	47.107	ENSNLEG00000000059	-	90	46.245	Nomascus_leucogenys
ENSDARG00000042571	rnaseh1	96	45.985	ENSNLEG00000015400	RNASEH1	87	45.985	Nomascus_leucogenys
ENSDARG00000042571	rnaseh1	97	34.457	ENSMEUG00000003610	-	90	34.457	Notamacropus_eugenii
ENSDARG00000042571	rnaseh1	97	52.399	ENSOPRG00000005072	RNASEH1	90	52.399	Ochotona_princeps
ENSDARG00000042571	rnaseh1	96	55.263	ENSODEG00000000235	Rnaseh1	86	55.263	Octodon_degus
ENSDARG00000042571	rnaseh1	98	66.787	ENSONIG00000018697	rnaseh1	99	66.787	Oreochromis_niloticus
ENSDARG00000042571	rnaseh1	96	55.597	ENSOCUG00000006117	RNASEH1	89	55.597	Oryctolagus_cuniculus
ENSDARG00000042571	rnaseh1	98	65.314	ENSORLG00000018127	rnaseh1	96	65.314	Oryzias_latipes
ENSDARG00000042571	rnaseh1	98	65.314	ENSORLG00020013660	rnaseh1	89	65.314	Oryzias_latipes_hni
ENSDARG00000042571	rnaseh1	98	65.314	ENSORLG00015011338	rnaseh1	89	65.314	Oryzias_latipes_hsok
ENSDARG00000042571	rnaseh1	99	63.598	ENSOMEG00000004710	rnaseh1	91	63.563	Oryzias_melastigma
ENSDARG00000042571	rnaseh1	96	55.805	ENSOGAG00000017176	RNASEH1	89	55.805	Otolemur_garnettii
ENSDARG00000042571	rnaseh1	97	47.253	ENSOARG00000005386	RNASEH1	90	47.253	Ovis_aries
ENSDARG00000042571	rnaseh1	96	52.941	ENSPPAG00000034221	RNASEH1	89	52.941	Pan_paniscus
ENSDARG00000042571	rnaseh1	96	54.340	ENSPPRG00000015513	RNASEH1	89	54.340	Panthera_pardus
ENSDARG00000042571	rnaseh1	90	53.815	ENSPTIG00000019034	RNASEH1	83	53.815	Panthera_tigris_altaica
ENSDARG00000042571	rnaseh1	96	52.941	ENSPTRG00000011614	RNASEH1	89	52.941	Pan_troglodytes
ENSDARG00000042571	rnaseh1	97	49.180	ENSPTRG00000043403	-	91	47.510	Pan_troglodytes
ENSDARG00000042571	rnaseh1	97	49.259	ENSPANG00000018246	-	89	49.259	Papio_anubis
ENSDARG00000042571	rnaseh1	96	52.941	ENSPANG00000000443	RNASEH1	97	52.344	Papio_anubis
ENSDARG00000042571	rnaseh1	99	61.972	ENSPKIG00000003146	rnaseh1	99	62.676	Paramormyrops_kingsleyae
ENSDARG00000042571	rnaseh1	98	55.422	ENSPSIG00000002937	RNASEH1	99	56.228	Pelodiscus_sinensis
ENSDARG00000042571	rnaseh1	97	61.481	ENSPMGG00000017463	rnaseh1	93	59.779	Periophthalmus_magnuspinnatus
ENSDARG00000042571	rnaseh1	96	52.060	ENSPEMG00000022465	-	90	53.160	Peromyscus_maniculatus_bairdii
ENSDARG00000042571	rnaseh1	97	52.030	ENSPCIG00000023334	-	89	52.030	Phascolarctos_cinereus
ENSDARG00000042571	rnaseh1	55	38.312	ENSPCIG00000026047	-	87	38.312	Phascolarctos_cinereus
ENSDARG00000042571	rnaseh1	98	67.636	ENSPFOG00000002841	rnaseh1	91	67.636	Poecilia_formosa
ENSDARG00000042571	rnaseh1	82	53.659	ENSPLAG00000021349	-	76	53.659	Poecilia_latipinna
ENSDARG00000042571	rnaseh1	98	67.273	ENSPMEG00000016826	rnaseh1	91	67.273	Poecilia_mexicana
ENSDARG00000042571	rnaseh1	98	64.643	ENSPREG00000012197	rnaseh1	91	64.643	Poecilia_reticulata
ENSDARG00000042571	rnaseh1	97	49.791	ENSPPYG00000008067	-	90	48.400	Pongo_abelii
ENSDARG00000042571	rnaseh1	96	43.750	ENSPPYG00000025873	RNASEH1	88	43.750	Pongo_abelii
ENSDARG00000042571	rnaseh1	97	51.292	ENSPCAG00000002500	RNASEH1	90	51.292	Procavia_capensis
ENSDARG00000042571	rnaseh1	97	49.813	ENSPCOG00000019444	RNASEH1	89	49.813	Propithecus_coquereli
ENSDARG00000042571	rnaseh1	97	53.309	ENSPVAG00000002070	RNASEH1	90	53.309	Pteropus_vampyrus
ENSDARG00000042571	rnaseh1	98	66.065	ENSPNYG00000001292	rnaseh1	89	66.426	Pundamilia_nyererei
ENSDARG00000042571	rnaseh1	100	69.534	ENSPNAG00000022344	rnaseh1	93	69.534	Pygocentrus_nattereri
ENSDARG00000042571	rnaseh1	96	53.585	ENSRNOG00000008584	Rnaseh1	89	54.511	Rattus_norvegicus
ENSDARG00000042571	rnaseh1	98	51.464	ENSRBIG00000034222	RNASEH1	88	52.788	Rhinopithecus_bieti
ENSDARG00000042571	rnaseh1	98	51.464	ENSRROG00000041761	RNASEH1	88	52.788	Rhinopithecus_roxellana
ENSDARG00000042571	rnaseh1	99	47.059	YMR234W	-	89	47.059	Saccharomyces_cerevisiae
ENSDARG00000042571	rnaseh1	96	53.506	ENSSBOG00000025411	RNASEH1	89	53.506	Saimiri_boliviensis_boliviensis
ENSDARG00000042571	rnaseh1	97	55.185	ENSSHAG00000013051	RNASEH1	88	55.185	Sarcophilus_harrisii
ENSDARG00000042571	rnaseh1	98	59.516	ENSSFOG00015002709	rnaseh1	92	62.633	Scleropages_formosus
ENSDARG00000042571	rnaseh1	98	68.727	ENSSMAG00000007586	rnaseh1	89	68.727	Scophthalmus_maximus
ENSDARG00000042571	rnaseh1	98	68.000	ENSSDUG00000008217	rnaseh1	95	68.364	Seriola_dumerili
ENSDARG00000042571	rnaseh1	91	66.929	ENSSLDG00000000442	rnaseh1	94	66.406	Seriola_lalandi_dorsalis
ENSDARG00000042571	rnaseh1	99	52.577	ENSSPUG00000006644	RNASEH1	95	52.577	Sphenodon_punctatus
ENSDARG00000042571	rnaseh1	98	65.942	ENSSPAG00000009353	rnaseh1	89	66.304	Stegastes_partitus
ENSDARG00000042571	rnaseh1	98	54.982	ENSSSCG00000025305	RNASEH1	91	54.982	Sus_scrofa
ENSDARG00000042571	rnaseh1	99	53.793	ENSTGUG00000012980	RNASEH1	95	53.287	Taeniopygia_guttata
ENSDARG00000042571	rnaseh1	98	63.177	ENSTRUG00000015774	rnaseh1	97	63.177	Takifugu_rubripes
ENSDARG00000042571	rnaseh1	98	66.909	ENSTNIG00000010715	rnaseh1	97	66.909	Tetraodon_nigroviridis
ENSDARG00000042571	rnaseh1	97	51.838	ENSTTRG00000001615	RNASEH1	90	51.838	Tursiops_truncatus
ENSDARG00000042571	rnaseh1	63	59.195	ENSUAMG00000018254	RNASEH1	83	59.195	Ursus_americanus
ENSDARG00000042571	rnaseh1	86	50.481	ENSUMAG00000003941	RNASEH1	65	50.481	Ursus_maritimus
ENSDARG00000042571	rnaseh1	97	45.149	ENSVPAG00000011589	RNASEH1	90	45.149	Vicugna_pacos
ENSDARG00000042571	rnaseh1	98	53.191	ENSVVUG00000008633	RNASEH1	80	54.887	Vulpes_vulpes
ENSDARG00000042571	rnaseh1	97	53.975	ENSXETG00000001212	rnaseh1	91	52.574	Xenopus_tropicalis
ENSDARG00000042571	rnaseh1	74	53.571	ENSXETG00000030371	-	99	53.571	Xenopus_tropicalis
ENSDARG00000042571	rnaseh1	98	65.818	ENSXMAG00000002357	rnaseh1	91	65.818	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004519	endonuclease activity	-	IEA	Function
GO:0004523	RNA-DNA hybrid ribonuclease activity	21873635.	IBA	Function
GO:0004523	RNA-DNA hybrid ribonuclease activity	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0043137	DNA replication, removal of RNA primer	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	21873635.	IBA	Process