EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000042590 (Gene tree)
Gene ID: 387255
Gene Symbol: rbm19
Alias: nil per os|npo
Full Name: RNA binding motif protein 19
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 25972 bases
Position: chr6:45843193-45869164
Accession: ZDB-GENE-031125-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000062458	RRM_1	PF00076.22	1.2e-85	1	6
ENSDARP00000062458	RRM_1	PF00076.22	1.2e-85	2	6
ENSDARP00000062458	RRM_1	PF00076.22	1.2e-85	3	6
ENSDARP00000062458	RRM_1	PF00076.22	1.2e-85	4	6
ENSDARP00000062458	RRM_1	PF00076.22	1.2e-85	5	6
ENSDARP00000062458	RRM_1	PF00076.22	1.2e-85	6	6
ENSDARP00000157568	RRM_1	PF00076.22	1.2e-85	1	6
ENSDARP00000157568	RRM_1	PF00076.22	1.2e-85	2	6
ENSDARP00000157568	RRM_1	PF00076.22	1.2e-85	3	6
ENSDARP00000157568	RRM_1	PF00076.22	1.2e-85	4	6
ENSDARP00000157568	RRM_1	PF00076.22	1.2e-85	5	6
ENSDARP00000157568	RRM_1	PF00076.22	1.2e-85	6	6

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000062459	-	3245	-	ENSDARP00000062458	927 (aa)	-	F1QF98
ENSDART00000180563	-	4779	XM_017356448	ENSDARP00000157568	927 (aa)	XP_017211937	F1QF98

Gene Model

Click here to download ENSDARG00000042590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000042590's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000042590	rbm19	58	39.189	ENSDARG00000002597	pabpc1l	66	39.189
ENSDARG00000042590	rbm19	56	39.189	ENSDARG00000021140	pabpc1b	53	39.189

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000042590	rbm19	100	59.259	ENSG00000122965	RBM19	92	75.490	Homo_sapiens
ENSDARG00000042590	rbm19	99	66.950	ENSAPOG00000010507	rbm19	99	66.808	Acanthochromis_polyacanthus
ENSDARG00000042590	rbm19	100	55.771	ENSAMEG00000008544	RBM19	99	55.897	Ailuropoda_melanoleuca
ENSDARG00000042590	rbm19	97	67.316	ENSACIG00000017780	rbm19	99	67.100	Amphilophus_citrinellus
ENSDARG00000042590	rbm19	99	68.017	ENSAOCG00000008554	rbm19	99	67.656	Amphiprion_ocellaris
ENSDARG00000042590	rbm19	97	67.952	ENSAPEG00000022381	rbm19	96	68.352	Amphiprion_percula
ENSDARG00000042590	rbm19	100	66.308	ENSATEG00000007000	rbm19	99	67.166	Anabas_testudineus
ENSDARG00000042590	rbm19	94	56.955	ENSAPLG00000015319	RBM19	99	56.846	Anas_platyrhynchos
ENSDARG00000042590	rbm19	100	57.653	ENSACAG00000005065	RBM19	99	58.410	Anolis_carolinensis
ENSDARG00000042590	rbm19	100	57.803	ENSANAG00000024136	RBM19	99	58.171	Aotus_nancymaae
ENSDARG00000042590	rbm19	99	63.305	ENSACLG00000001399	rbm19	99	62.461	Astatotilapia_calliptera
ENSDARG00000042590	rbm19	64	77.685	ENSAMXG00000017073	rbm19	99	66.847	Astyanax_mexicanus
ENSDARG00000042590	rbm19	100	58.359	ENSBTAG00000031824	RBM19	99	58.058	Bos_taurus
ENSDARG00000042590	rbm19	81	47.059	WBGene00004315	rbd-1	99	48.515	Caenorhabditis_elegans
ENSDARG00000042590	rbm19	100	58.128	ENSCJAG00000009798	RBM19	99	58.642	Callithrix_jacchus
ENSDARG00000042590	rbm19	100	56.879	ENSCAFG00000009146	RBM19	99	57.480	Canis_familiaris
ENSDARG00000042590	rbm19	100	56.982	ENSCAFG00020017862	RBM19	99	57.582	Canis_lupus_dingo
ENSDARG00000042590	rbm19	99	58.098	ENSCHIG00000014917	RBM19	99	58.830	Capra_hircus
ENSDARG00000042590	rbm19	95	55.046	ENSTSYG00000007207	RBM19	96	54.954	Carlito_syrichta
ENSDARG00000042590	rbm19	99	56.782	ENSCAPG00000006869	RBM19	99	57.098	Cavia_aperea
ENSDARG00000042590	rbm19	100	57.053	ENSCPOG00000026629	RBM19	99	57.652	Cavia_porcellus
ENSDARG00000042590	rbm19	95	50.790	ENSCCAG00000026637	-	99	49.878	Cebus_capucinus
ENSDARG00000042590	rbm19	99	58.094	ENSCCAG00000021665	-	99	57.798	Cebus_capucinus
ENSDARG00000042590	rbm19	99	58.359	ENSCATG00000035841	RBM19	99	57.785	Cercocebus_atys
ENSDARG00000042590	rbm19	100	56.544	ENSCLAG00000009965	RBM19	99	57.041	Chinchilla_lanigera
ENSDARG00000042590	rbm19	100	66.667	ENSCSAG00000002352	RBM19	94	66.917	Chlorocebus_sabaeus
ENSDARG00000042590	rbm19	99	59.938	ENSCPBG00000011990	RBM19	99	60.377	Chrysemys_picta_bellii
ENSDARG00000042590	rbm19	76	52.077	ENSCING00000023076	-	94	51.181	Ciona_intestinalis
ENSDARG00000042590	rbm19	100	59.156	ENSCANG00000035927	RBM19	99	58.617	Colobus_angolensis_palliatus
ENSDARG00000042590	rbm19	99	57.632	ENSCGRG00001000323	Rbm19	99	58.108	Cricetulus_griseus_chok1gshd
ENSDARG00000042590	rbm19	99	57.632	ENSCGRG00000010371	Rbm19	99	58.108	Cricetulus_griseus_crigri
ENSDARG00000042590	rbm19	100	64.873	ENSCSEG00000017436	rbm19	95	72.377	Cynoglossus_semilaevis
ENSDARG00000042590	rbm19	99	65.602	ENSCVAG00000000300	rbm19	99	64.731	Cyprinodon_variegatus
ENSDARG00000042590	rbm19	100	56.966	ENSDNOG00000024534	RBM19	96	55.906	Dasypus_novemcinctus
ENSDARG00000042590	rbm19	97	55.745	ENSDORG00000008549	Rbm19	100	55.413	Dipodomys_ordii
ENSDARG00000042590	rbm19	97	37.938	FBgn0036018	CG3335	96	37.846	Drosophila_melanogaster
ENSDARG00000042590	rbm19	69	76.812	ENSETEG00000016887	-	57	76.812	Echinops_telfairi
ENSDARG00000042590	rbm19	95	46.134	ENSEBUG00000008521	-	94	45.605	Eptatretus_burgeri
ENSDARG00000042590	rbm19	100	57.495	ENSEASG00005009452	RBM19	99	57.851	Equus_asinus_asinus
ENSDARG00000042590	rbm19	100	57.830	ENSECAG00000023716	RBM19	99	57.835	Equus_caballus
ENSDARG00000042590	rbm19	99	67.653	ENSELUG00000012561	rbm19	99	67.616	Esox_lucius
ENSDARG00000042590	rbm19	100	56.715	ENSFCAG00000002962	RBM19	98	56.198	Felis_catus
ENSDARG00000042590	rbm19	98	59.554	ENSFALG00000007768	RBM19	99	60.421	Ficedula_albicollis
ENSDARG00000042590	rbm19	100	56.625	ENSFDAG00000004629	RBM19	99	57.716	Fukomys_damarensis
ENSDARG00000042590	rbm19	99	65.176	ENSFHEG00000012578	rbm19	99	65.499	Fundulus_heteroclitus
ENSDARG00000042590	rbm19	97	63.152	ENSGMOG00000013120	rbm19	100	61.730	Gadus_morhua
ENSDARG00000042590	rbm19	98	59.034	ENSGALG00000008289	RBM19	99	58.673	Gallus_gallus
ENSDARG00000042590	rbm19	99	64.637	ENSGAFG00000012337	rbm19	99	65.042	Gambusia_affinis
ENSDARG00000042590	rbm19	99	66.415	ENSGACG00000009462	rbm19	99	66.202	Gasterosteus_aculeatus
ENSDARG00000042590	rbm19	62	66.610	ENSGAGG00000019457	RBM19	99	66.269	Gopherus_agassizii
ENSDARG00000042590	rbm19	100	59.156	ENSGGOG00000007371	RBM19	99	58.514	Gorilla_gorilla
ENSDARG00000042590	rbm19	99	65.602	ENSHBUG00000009047	rbm19	99	65.069	Haplochromis_burtoni
ENSDARG00000042590	rbm19	100	56.625	ENSHGLG00000010899	RBM19	99	57.497	Heterocephalus_glaber_female
ENSDARG00000042590	rbm19	100	56.352	ENSHGLG00100017936	RBM19	99	56.909	Heterocephalus_glaber_male
ENSDARG00000042590	rbm19	99	65.944	ENSHCOG00000016446	rbm19	99	65.584	Hippocampus_comes
ENSDARG00000042590	rbm19	99	75.375	ENSIPUG00000023849	rbm19	99	75.670	Ictalurus_punctatus
ENSDARG00000042590	rbm19	99	67.020	ENSKMAG00000014807	rbm19	99	66.843	Kryptolebias_marmoratus
ENSDARG00000042590	rbm19	99	66.523	ENSLBEG00000012897	rbm19	99	66.199	Labrus_bergylta
ENSDARG00000042590	rbm19	70	55.247	ENSLACG00000012030	RBM19	92	60.877	Latimeria_chalumnae
ENSDARG00000042590	rbm19	99	65.825	ENSLOCG00000008341	rbm19	99	65.753	Lepisosteus_oculatus
ENSDARG00000042590	rbm19	95	55.309	ENSLAFG00000004187	RBM19	100	54.609	Loxodonta_africana
ENSDARG00000042590	rbm19	100	59.259	ENSMFAG00000046091	RBM19	99	56.635	Macaca_fascicularis
ENSDARG00000042590	rbm19	100	59.362	ENSMMUG00000010496	RBM19	99	58.720	Macaca_mulatta
ENSDARG00000042590	rbm19	100	55.474	ENSMNEG00000028452	RBM19	99	55.698	Macaca_nemestrina
ENSDARG00000042590	rbm19	100	57.981	ENSMLEG00000034550	RBM19	99	57.364	Mandrillus_leucophaeus
ENSDARG00000042590	rbm19	99	67.407	ENSMAMG00000014397	rbm19	99	67.229	Mastacembelus_armatus
ENSDARG00000042590	rbm19	99	68.038	ENSMZEG00005016607	rbm19	99	67.722	Maylandia_zebra
ENSDARG00000042590	rbm19	97	54.153	ENSMGAG00000010087	RBM19	99	53.720	Meleagris_gallopavo
ENSDARG00000042590	rbm19	99	58.910	ENSMAUG00000019290	Rbm19	99	59.020	Mesocricetus_auratus
ENSDARG00000042590	rbm19	100	58.008	ENSMICG00000014423	RBM19	99	58.111	Microcebus_murinus
ENSDARG00000042590	rbm19	99	64.890	ENSMMOG00000017839	rbm19	99	64.792	Mola_mola
ENSDARG00000042590	rbm19	99	59.683	ENSMODG00000003597	RBM19	99	58.660	Monodelphis_domestica
ENSDARG00000042590	rbm19	99	66.070	ENSMALG00000012647	rbm19	99	67.053	Monopterus_albus
ENSDARG00000042590	rbm19	100	58.094	MGP_CAROLIEiJ_G0027656	Rbm19	99	57.959	Mus_caroli
ENSDARG00000042590	rbm19	100	57.377	ENSMUSG00000029594	Rbm19	99	57.505	Mus_musculus
ENSDARG00000042590	rbm19	100	57.684	MGP_PahariEiJ_G0024238	Rbm19	99	57.803	Mus_pahari
ENSDARG00000042590	rbm19	100	57.523	MGP_SPRETEiJ_G0028656	Rbm19	99	57.594	Mus_spretus
ENSDARG00000042590	rbm19	100	56.384	ENSMPUG00000002694	RBM19	99	57.760	Mustela_putorius_furo
ENSDARG00000042590	rbm19	100	57.649	ENSMLUG00000015075	RBM19	99	57.230	Myotis_lucifugus
ENSDARG00000042590	rbm19	99	58.603	ENSNGAG00000009076	Rbm19	99	56.996	Nannospalax_galili
ENSDARG00000042590	rbm19	99	66.173	ENSNBRG00000005913	rbm19	99	66.073	Neolamprologus_brichardi
ENSDARG00000042590	rbm19	100	58.951	ENSNLEG00000000190	RBM19	99	58.514	Nomascus_leucogenys
ENSDARG00000042590	rbm19	94	62.389	ENSMEUG00000004045	RBM19	99	51.616	Notamacropus_eugenii
ENSDARG00000042590	rbm19	100	57.260	ENSOPRG00000012064	RBM19	99	57.246	Ochotona_princeps
ENSDARG00000042590	rbm19	100	56.917	ENSODEG00000012977	RBM19	99	57.278	Octodon_degus
ENSDARG00000042590	rbm19	100	66.053	ENSONIG00000013576	rbm19	99	70.055	Oreochromis_niloticus
ENSDARG00000042590	rbm19	100	56.244	ENSOCUG00000009398	RBM19	99	56.354	Oryctolagus_cuniculus
ENSDARG00000042590	rbm19	99	64.990	ENSORLG00000008077	rbm19	99	65.236	Oryzias_latipes
ENSDARG00000042590	rbm19	98	64.819	ENSORLG00020013187	rbm19	99	65.203	Oryzias_latipes_hni
ENSDARG00000042590	rbm19	99	65.429	ENSORLG00015001774	rbm19	99	64.916	Oryzias_latipes_hsok
ENSDARG00000042590	rbm19	99	66.631	ENSOMEG00000003334	rbm19	99	66.349	Oryzias_melastigma
ENSDARG00000042590	rbm19	95	56.492	ENSOGAG00000000602	RBM19	100	55.367	Otolemur_garnettii
ENSDARG00000042590	rbm19	99	58.307	ENSOARG00000006827	RBM19	99	59.058	Ovis_aries
ENSDARG00000042590	rbm19	100	58.522	ENSPPAG00000043712	RBM19	99	58.660	Pan_paniscus
ENSDARG00000042590	rbm19	100	56.315	ENSPPRG00000023027	RBM19	98	56.211	Panthera_pardus
ENSDARG00000042590	rbm19	100	53.501	ENSPTIG00000011096	RBM19	72	58.420	Panthera_tigris_altaica
ENSDARG00000042590	rbm19	100	58.522	ENSPTRG00000005494	RBM19	99	58.660	Pan_troglodytes
ENSDARG00000042590	rbm19	100	58.745	ENSPANG00000004795	RBM19	98	56.973	Papio_anubis
ENSDARG00000042590	rbm19	99	66.845	ENSPKIG00000017095	rbm19	99	66.952	Paramormyrops_kingsleyae
ENSDARG00000042590	rbm19	89	56.357	ENSPSIG00000008191	RBM19	99	56.716	Pelodiscus_sinensis
ENSDARG00000042590	rbm19	86	71.036	ENSPMGG00000019087	rbm19	100	69.716	Periophthalmus_magnuspinnatus
ENSDARG00000042590	rbm19	99	57.440	ENSPEMG00000018058	Rbm19	99	57.764	Peromyscus_maniculatus_bairdii
ENSDARG00000042590	rbm19	100	58.787	ENSPCIG00000028861	RBM19	100	59.282	Phascolarctos_cinereus
ENSDARG00000042590	rbm19	99	65.037	ENSPFOG00000015300	rbm19	99	65.539	Poecilia_formosa
ENSDARG00000042590	rbm19	99	65.319	ENSPLAG00000000059	rbm19	99	65.608	Poecilia_latipinna
ENSDARG00000042590	rbm19	99	64.894	ENSPMEG00000018585	rbm19	99	65.079	Poecilia_mexicana
ENSDARG00000042590	rbm19	99	65.111	ENSPREG00000000978	rbm19	99	65.401	Poecilia_reticulata
ENSDARG00000042590	rbm19	100	57.305	ENSPPYG00000004993	RBM19	99	56.615	Pongo_abelii
ENSDARG00000042590	rbm19	100	56.879	ENSPCOG00000016190	RBM19	99	57.187	Propithecus_coquereli
ENSDARG00000042590	rbm19	100	56.687	ENSPVAG00000011618	RBM19	99	56.746	Pteropus_vampyrus
ENSDARG00000042590	rbm19	99	68.337	ENSPNYG00000017434	rbm19	99	67.804	Pundamilia_nyererei
ENSDARG00000042590	rbm19	99	76.364	ENSPNAG00000012069	rbm19	100	76.791	Pygocentrus_nattereri
ENSDARG00000042590	rbm19	99	58.273	ENSRNOG00000001397	Rbm19	99	58.897	Rattus_norvegicus
ENSDARG00000042590	rbm19	100	59.546	ENSRBIG00000041419	RBM19	99	57.895	Rhinopithecus_bieti
ENSDARG00000042590	rbm19	100	59.443	ENSRROG00000031938	RBM19	99	58.927	Rhinopithecus_roxellana
ENSDARG00000042590	rbm19	92	37.597	YPR112C	-	77	37.143	Saccharomyces_cerevisiae
ENSDARG00000042590	rbm19	100	55.828	ENSSBOG00000021434	-	99	56.760	Saimiri_boliviensis_boliviensis
ENSDARG00000042590	rbm19	95	51.114	ENSSBOG00000022679	-	99	51.027	Saimiri_boliviensis_boliviensis
ENSDARG00000042590	rbm19	99	59.143	ENSSHAG00000012256	RBM19	100	59.294	Sarcophilus_harrisii
ENSDARG00000042590	rbm19	99	62.094	ENSSFOG00015005124	rbm19	99	62.051	Scleropages_formosus
ENSDARG00000042590	rbm19	99	67.444	ENSSMAG00000011828	rbm19	99	66.209	Scophthalmus_maximus
ENSDARG00000042590	rbm19	99	68.716	ENSSDUG00000013544	rbm19	99	67.903	Seriola_dumerili
ENSDARG00000042590	rbm19	89	72.171	ENSSLDG00000025413	rbm19	94	73.089	Seriola_lalandi_dorsalis
ENSDARG00000042590	rbm19	62	64.655	ENSSPUG00000011064	RBM19	99	65.000	Sphenodon_punctatus
ENSDARG00000042590	rbm19	97	65.066	ENSSPAG00000018685	rbm19	98	66.085	Stegastes_partitus
ENSDARG00000042590	rbm19	100	59.162	ENSSSCG00000009868	RBM19	99	59.748	Sus_scrofa
ENSDARG00000042590	rbm19	99	58.463	ENSTGUG00000009017	RBM19	99	58.830	Taeniopygia_guttata
ENSDARG00000042590	rbm19	99	64.974	ENSTRUG00000016032	rbm19	99	64.868	Takifugu_rubripes
ENSDARG00000042590	rbm19	69	78.689	ENSTBEG00000000703	RBM19	70	78.689	Tupaia_belangeri
ENSDARG00000042590	rbm19	85	59.539	ENSTTRG00000003987	RBM19	83	61.513	Tursiops_truncatus
ENSDARG00000042590	rbm19	99	55.809	ENSUAMG00000002076	RBM19	98	57.203	Ursus_americanus
ENSDARG00000042590	rbm19	99	56.347	ENSUMAG00000010816	RBM19	99	57.736	Ursus_maritimus
ENSDARG00000042590	rbm19	100	57.187	ENSVVUG00000007886	RBM19	99	57.230	Vulpes_vulpes
ENSDARG00000042590	rbm19	99	56.329	ENSXETG00000017668	rbm19	99	56.383	Xenopus_tropicalis
ENSDARG00000042590	rbm19	99	63.306	ENSXCOG00000016995	rbm19	99	62.875	Xiphophorus_couchianus
ENSDARG00000042590	rbm19	99	65.319	ENSXMAG00000007641	rbm19	99	64.942	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	12874115.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0048546	digestive tract morphogenesis	12874115.	IMP	Process