EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000043177 (Gene tree)
Gene ID: 445157
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5079 bases
Position: chr8:44613135-44618213
Accession: ZDB-GENE-040801-68
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000063391	LSM	PF01423.22	1.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000063392	-	919	-	ENSDARP00000063391	133 (aa)	-	Q6DBW5

Gene Model

Click here to download ENSDARG00000043177's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000043177	lsm1	56	33.333	ENSDARG00000091656	lsm8	76	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000043177	lsm1	100	85.714	ENSG00000175324	LSM1	100	85.714	Homo_sapiens
ENSDARG00000043177	lsm1	100	81.203	ENSAPOG00000010833	lsm1	100	81.203	Acanthochromis_polyacanthus
ENSDARG00000043177	lsm1	100	85.714	ENSAMEG00000011141	LSM1	100	85.714	Ailuropoda_melanoleuca
ENSDARG00000043177	lsm1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSDARG00000043177	lsm1	100	81.203	ENSAOCG00000017997	-	100	81.203	Amphiprion_ocellaris
ENSDARG00000043177	lsm1	100	81.203	ENSAOCG00000017096	lsm1	100	81.203	Amphiprion_ocellaris
ENSDARG00000043177	lsm1	100	81.203	ENSAPEG00000011669	lsm1	100	81.203	Amphiprion_percula
ENSDARG00000043177	lsm1	100	82.707	ENSATEG00000022266	lsm1	100	82.707	Anabas_testudineus
ENSDARG00000043177	lsm1	100	85.714	ENSANAG00000027785	LSM1	100	85.714	Aotus_nancymaae
ENSDARG00000043177	lsm1	100	82.707	ENSACLG00000011400	lsm1	100	82.707	Astatotilapia_calliptera
ENSDARG00000043177	lsm1	100	97.744	ENSAMXG00000005441	lsm1	100	97.744	Astyanax_mexicanus
ENSDARG00000043177	lsm1	100	84.962	ENSBTAG00000001612	LSM1	100	84.962	Bos_taurus
ENSDARG00000043177	lsm1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSDARG00000043177	lsm1	100	84.962	ENSCJAG00000048015	LSM1	100	84.962	Callithrix_jacchus
ENSDARG00000043177	lsm1	100	85.714	ENSCAFG00000006113	LSM1	100	85.714	Canis_familiaris
ENSDARG00000043177	lsm1	100	85.714	ENSCAFG00020001822	LSM1	100	85.714	Canis_lupus_dingo
ENSDARG00000043177	lsm1	100	85.714	ENSCHIG00000013194	LSM1	100	85.714	Capra_hircus
ENSDARG00000043177	lsm1	100	85.714	ENSTSYG00000010394	LSM1	100	85.714	Carlito_syrichta
ENSDARG00000043177	lsm1	100	85.714	ENSCPOG00000032671	LSM1	100	85.714	Cavia_porcellus
ENSDARG00000043177	lsm1	100	85.714	ENSCCAG00000037171	LSM1	100	85.714	Cebus_capucinus
ENSDARG00000043177	lsm1	100	85.714	ENSCATG00000020377	LSM1	100	85.714	Cercocebus_atys
ENSDARG00000043177	lsm1	100	85.714	ENSCLAG00000001137	LSM1	100	85.714	Chinchilla_lanigera
ENSDARG00000043177	lsm1	100	85.714	ENSCSAG00000015485	LSM1	100	85.714	Chlorocebus_sabaeus
ENSDARG00000043177	lsm1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSDARG00000043177	lsm1	95	81.102	ENSCPBG00000006569	LSM1	86	81.102	Chrysemys_picta_bellii
ENSDARG00000043177	lsm1	100	67.669	ENSCING00000013536	-	100	67.669	Ciona_intestinalis
ENSDARG00000043177	lsm1	100	85.714	ENSCANG00000019173	LSM1	100	85.714	Colobus_angolensis_palliatus
ENSDARG00000043177	lsm1	100	84.962	ENSCGRG00001024560	-	100	84.962	Cricetulus_griseus_chok1gshd
ENSDARG00000043177	lsm1	80	73.874	ENSCGRG00001002259	-	97	73.874	Cricetulus_griseus_chok1gshd
ENSDARG00000043177	lsm1	100	84.962	ENSCGRG00000006554	-	100	84.962	Cricetulus_griseus_crigri
ENSDARG00000043177	lsm1	80	73.874	ENSCGRG00000013603	-	97	73.874	Cricetulus_griseus_crigri
ENSDARG00000043177	lsm1	100	81.955	ENSCSEG00000010570	lsm1	92	81.955	Cynoglossus_semilaevis
ENSDARG00000043177	lsm1	100	81.203	ENSCSEG00000008319	lsm1	92	81.203	Cynoglossus_semilaevis
ENSDARG00000043177	lsm1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSDARG00000043177	lsm1	89	66.387	ENSDNOG00000046620	-	100	66.387	Dasypus_novemcinctus
ENSDARG00000043177	lsm1	100	85.714	ENSDNOG00000046387	-	100	85.714	Dasypus_novemcinctus
ENSDARG00000043177	lsm1	99	81.818	ENSDNOG00000030989	-	99	81.818	Dasypus_novemcinctus
ENSDARG00000043177	lsm1	100	84.962	ENSDNOG00000032911	-	100	84.962	Dasypus_novemcinctus
ENSDARG00000043177	lsm1	100	85.714	ENSDORG00000028172	Lsm1	100	85.714	Dipodomys_ordii
ENSDARG00000043177	lsm1	100	59.398	FBgn0261067	LSm1	97	59.398	Drosophila_melanogaster
ENSDARG00000043177	lsm1	100	84.211	ENSEASG00005016677	LSM1	100	84.211	Equus_asinus_asinus
ENSDARG00000043177	lsm1	100	84.211	ENSECAG00000010461	LSM1	100	84.211	Equus_caballus
ENSDARG00000043177	lsm1	72	81.250	ENSEEUG00000015181	LSM1	97	81.250	Erinaceus_europaeus
ENSDARG00000043177	lsm1	100	75.188	ENSELUG00000023374	lsm1	100	75.188	Esox_lucius
ENSDARG00000043177	lsm1	100	83.459	ENSELUG00000002322	lsm1	100	83.459	Esox_lucius
ENSDARG00000043177	lsm1	100	85.714	ENSFCAG00000039335	LSM1	100	85.714	Felis_catus
ENSDARG00000043177	lsm1	89	85.593	ENSFALG00000006723	LSM1	100	85.593	Ficedula_albicollis
ENSDARG00000043177	lsm1	100	85.714	ENSFDAG00000007658	LSM1	100	85.714	Fukomys_damarensis
ENSDARG00000043177	lsm1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSDARG00000043177	lsm1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSDARG00000043177	lsm1	100	85.714	ENSGALG00000003245	LSM1	100	85.714	Gallus_gallus
ENSDARG00000043177	lsm1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSDARG00000043177	lsm1	100	82.707	ENSGACG00000011763	lsm1	98	82.707	Gasterosteus_aculeatus
ENSDARG00000043177	lsm1	100	87.970	ENSGAGG00000024065	LSM1	100	87.970	Gopherus_agassizii
ENSDARG00000043177	lsm1	100	85.714	ENSGGOG00000022658	LSM1	100	85.714	Gorilla_gorilla
ENSDARG00000043177	lsm1	100	82.707	ENSHBUG00000010897	lsm1	100	82.707	Haplochromis_burtoni
ENSDARG00000043177	lsm1	100	85.714	ENSHGLG00000005711	LSM1	100	85.714	Heterocephalus_glaber_female
ENSDARG00000043177	lsm1	100	66.165	ENSHGLG00000017574	-	100	66.165	Heterocephalus_glaber_female
ENSDARG00000043177	lsm1	100	66.165	ENSHGLG00100012152	-	100	66.165	Heterocephalus_glaber_male
ENSDARG00000043177	lsm1	100	85.714	ENSHGLG00100017660	LSM1	100	85.714	Heterocephalus_glaber_male
ENSDARG00000043177	lsm1	100	81.203	ENSHCOG00000017233	lsm1	100	81.203	Hippocampus_comes
ENSDARG00000043177	lsm1	100	97.744	ENSIPUG00000002312	LSM1	100	97.744	Ictalurus_punctatus
ENSDARG00000043177	lsm1	58	96.104	ENSSTOG00000026870	LSM1	94	96.104	Ictidomys_tridecemlineatus
ENSDARG00000043177	lsm1	100	84.962	ENSJJAG00000014605	-	100	84.962	Jaculus_jaculus
ENSDARG00000043177	lsm1	100	82.707	ENSKMAG00000003016	lsm1	100	82.707	Kryptolebias_marmoratus
ENSDARG00000043177	lsm1	100	82.707	ENSLBEG00000022352	lsm1	100	82.707	Labrus_bergylta
ENSDARG00000043177	lsm1	89	82.203	ENSLACG00000010947	LSM1	98	82.203	Latimeria_chalumnae
ENSDARG00000043177	lsm1	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSDARG00000043177	lsm1	100	85.714	ENSLAFG00000003534	LSM1	100	85.714	Loxodonta_africana
ENSDARG00000043177	lsm1	100	85.714	ENSMFAG00000032661	LSM1	100	85.714	Macaca_fascicularis
ENSDARG00000043177	lsm1	100	85.714	ENSMLEG00000034535	LSM1	100	85.714	Mandrillus_leucophaeus
ENSDARG00000043177	lsm1	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSDARG00000043177	lsm1	100	82.707	ENSMZEG00005010321	lsm1	100	82.707	Maylandia_zebra
ENSDARG00000043177	lsm1	100	85.714	ENSMGAG00000002125	LSM1	100	85.714	Meleagris_gallopavo
ENSDARG00000043177	lsm1	100	85.714	ENSMICG00000030726	LSM1	100	85.714	Microcebus_murinus
ENSDARG00000043177	lsm1	100	84.962	ENSMOCG00000022817	Lsm1	100	84.962	Microtus_ochrogaster
ENSDARG00000043177	lsm1	100	81.955	ENSMMOG00000015466	lsm1	100	81.955	Mola_mola
ENSDARG00000043177	lsm1	100	87.218	ENSMODG00000010732	-	100	87.218	Monodelphis_domestica
ENSDARG00000043177	lsm1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSDARG00000043177	lsm1	100	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSDARG00000043177	lsm1	100	83.459	ENSMUSG00000037296	Lsm1	91	94.872	Mus_musculus
ENSDARG00000043177	lsm1	100	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSDARG00000043177	lsm1	100	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSDARG00000043177	lsm1	100	86.466	ENSMPUG00000009883	LSM1	100	86.466	Mustela_putorius_furo
ENSDARG00000043177	lsm1	100	85.714	ENSMLUG00000003734	LSM1	100	85.714	Myotis_lucifugus
ENSDARG00000043177	lsm1	100	84.962	ENSNGAG00000003753	Lsm1	100	84.962	Nannospalax_galili
ENSDARG00000043177	lsm1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSDARG00000043177	lsm1	100	85.714	ENSNLEG00000029390	LSM1	100	85.714	Nomascus_leucogenys
ENSDARG00000043177	lsm1	100	87.218	ENSMEUG00000014077	LSM1	100	87.218	Notamacropus_eugenii
ENSDARG00000043177	lsm1	88	82.906	ENSOPRG00000000333	LSM1	100	82.906	Ochotona_princeps
ENSDARG00000043177	lsm1	100	85.714	ENSODEG00000004834	LSM1	100	85.714	Octodon_degus
ENSDARG00000043177	lsm1	100	82.707	ENSONIG00000010782	lsm1	100	82.707	Oreochromis_niloticus
ENSDARG00000043177	lsm1	100	87.218	ENSOANG00000003256	LSM1	100	87.218	Ornithorhynchus_anatinus
ENSDARG00000043177	lsm1	100	85.714	ENSOCUG00000015399	LSM1	100	85.714	Oryctolagus_cuniculus
ENSDARG00000043177	lsm1	100	84.211	ENSORLG00000030288	lsm1	100	84.211	Oryzias_latipes
ENSDARG00000043177	lsm1	100	84.211	ENSORLG00020003941	lsm1	100	84.211	Oryzias_latipes_hni
ENSDARG00000043177	lsm1	100	85.714	ENSORLG00020006213	-	86	85.714	Oryzias_latipes_hni
ENSDARG00000043177	lsm1	100	84.211	ENSORLG00015018350	lsm1	100	84.211	Oryzias_latipes_hsok
ENSDARG00000043177	lsm1	100	82.707	ENSOMEG00000012454	lsm1	100	82.707	Oryzias_melastigma
ENSDARG00000043177	lsm1	100	85.714	ENSOGAG00000015161	LSM1	100	85.714	Otolemur_garnettii
ENSDARG00000043177	lsm1	100	85.714	ENSOARG00000001317	LSM1	100	85.714	Ovis_aries
ENSDARG00000043177	lsm1	100	85.714	ENSPPAG00000032279	LSM1	100	85.714	Pan_paniscus
ENSDARG00000043177	lsm1	100	85.714	ENSPPRG00000014172	-	100	85.714	Panthera_pardus
ENSDARG00000043177	lsm1	100	85.714	ENSPTIG00000010289	LSM1	100	85.714	Panthera_tigris_altaica
ENSDARG00000043177	lsm1	100	85.714	ENSPTRG00000020169	LSM1	100	85.714	Pan_troglodytes
ENSDARG00000043177	lsm1	100	85.714	ENSPANG00000008814	LSM1	100	85.714	Papio_anubis
ENSDARG00000043177	lsm1	100	83.459	ENSPKIG00000001839	lsm1	100	83.459	Paramormyrops_kingsleyae
ENSDARG00000043177	lsm1	100	79.699	ENSPKIG00000019409	LSM1	99	79.699	Paramormyrops_kingsleyae
ENSDARG00000043177	lsm1	97	82.171	ENSPSIG00000012563	LSM1	98	82.171	Pelodiscus_sinensis
ENSDARG00000043177	lsm1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSDARG00000043177	lsm1	85	74.336	ENSPMAG00000002671	lsm1	100	74.336	Petromyzon_marinus
ENSDARG00000043177	lsm1	100	85.714	ENSPCIG00000008880	LSM1	100	85.714	Phascolarctos_cinereus
ENSDARG00000043177	lsm1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSDARG00000043177	lsm1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSDARG00000043177	lsm1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSDARG00000043177	lsm1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSDARG00000043177	lsm1	100	85.714	ENSPPYG00000018521	LSM1	100	85.714	Pongo_abelii
ENSDARG00000043177	lsm1	100	85.714	ENSPCOG00000020901	-	100	85.714	Propithecus_coquereli
ENSDARG00000043177	lsm1	100	85.714	ENSPVAG00000006016	LSM1	100	85.714	Pteropus_vampyrus
ENSDARG00000043177	lsm1	100	82.707	ENSPNYG00000018067	lsm1	100	82.707	Pundamilia_nyererei
ENSDARG00000043177	lsm1	100	96.992	ENSPNAG00000013707	lsm1	100	96.992	Pygocentrus_nattereri
ENSDARG00000043177	lsm1	100	84.211	ENSRNOG00000015375	Lsm1	100	84.211	Rattus_norvegicus
ENSDARG00000043177	lsm1	100	85.714	ENSRBIG00000027449	LSM1	100	85.714	Rhinopithecus_bieti
ENSDARG00000043177	lsm1	100	85.714	ENSRROG00000036074	LSM1	100	85.714	Rhinopithecus_roxellana
ENSDARG00000043177	lsm1	83	46.154	YJL124C	LSM1	67	46.154	Saccharomyces_cerevisiae
ENSDARG00000043177	lsm1	100	87.218	ENSSHAG00000017260	LSM1	100	87.218	Sarcophilus_harrisii
ENSDARG00000043177	lsm1	100	82.707	ENSSFOG00015019528	lsm1	100	82.707	Scleropages_formosus
ENSDARG00000043177	lsm1	100	82.707	ENSSMAG00000004930	lsm1	100	82.707	Scophthalmus_maximus
ENSDARG00000043177	lsm1	100	81.203	ENSSDUG00000021823	lsm1	100	81.203	Seriola_dumerili
ENSDARG00000043177	lsm1	100	81.203	ENSSLDG00000012154	lsm1	100	81.203	Seriola_lalandi_dorsalis
ENSDARG00000043177	lsm1	100	87.970	ENSSPUG00000014878	LSM1	100	87.970	Sphenodon_punctatus
ENSDARG00000043177	lsm1	100	81.955	ENSSPAG00000020548	lsm1	100	81.955	Stegastes_partitus
ENSDARG00000043177	lsm1	100	85.714	ENSSSCG00000039058	LSM1	100	85.714	Sus_scrofa
ENSDARG00000043177	lsm1	100	87.218	ENSTGUG00000004793	LSM1	100	87.218	Taeniopygia_guttata
ENSDARG00000043177	lsm1	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSDARG00000043177	lsm1	100	83.459	ENSTNIG00000004055	lsm1	100	83.459	Tetraodon_nigroviridis
ENSDARG00000043177	lsm1	88	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSDARG00000043177	lsm1	100	85.714	ENSTTRG00000004482	LSM1	100	85.714	Tursiops_truncatus
ENSDARG00000043177	lsm1	100	85.714	ENSUAMG00000004103	LSM1	100	85.714	Ursus_americanus
ENSDARG00000043177	lsm1	100	85.714	ENSUMAG00000009132	LSM1	100	85.714	Ursus_maritimus
ENSDARG00000043177	lsm1	58	94.805	ENSVPAG00000011593	LSM1	100	94.805	Vicugna_pacos
ENSDARG00000043177	lsm1	100	85.714	ENSVVUG00000020191	LSM1	100	85.714	Vulpes_vulpes
ENSDARG00000043177	lsm1	61	67.901	ENSVVUG00000014880	-	86	67.901	Vulpes_vulpes
ENSDARG00000043177	lsm1	100	82.482	ENSXETG00000009004	lsm1	100	82.482	Xenopus_tropicalis
ENSDARG00000043177	lsm1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSDARG00000043177	lsm1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000339	RNA cap binding	21873635.	IBA	Function
GO:0000932	P-body	21873635.	IBA	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component