EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000043328 (Gene tree)
Gene ID: 561900
Gene Symbol: fip1l1a
Alias: si:dkey-161n17.1
Full Name: FIP1 like 1a (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 59003 bases
Position: chr20:22739792-22798794
Accession: ZDB-GENE-041014-8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000118281	Fip1	PF05182.13	3.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000152645	-	563	-	ENSDARP00000126622	188 (aa)	-	R4GDR6
ENSDART00000148084	-	2515	XM_009294654	ENSDARP00000118281	465 (aa)	XP_009292929	Q5RHJ8

Gene Model

Click here to download ENSDARG00000043328's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043328's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000043328	fip1l1a	100	39.966	ENSDARG00000070431	fip1l1b	100	38.475

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000043328	fip1l1a	89	48.936	ENSAOCG00000021043	fip1l1b	100	41.986	Amphiprion_ocellaris
ENSDARG00000043328	fip1l1a	100	42.637	ENSAPEG00000022229	fip1l1b	100	41.986	Amphiprion_percula
ENSDARG00000043328	fip1l1a	92	48.744	ENSATEG00000021757	fip1l1b	100	41.289	Anabas_testudineus
ENSDARG00000043328	fip1l1a	92	48.241	ENSACLG00000010418	fip1l1b	100	43.031	Astatotilapia_calliptera
ENSDARG00000043328	fip1l1a	92	45.685	ENSAMXG00000011126	fip1l1b	89	40.813	Astyanax_mexicanus
ENSDARG00000043328	fip1l1a	56	50.526	ENSAMXG00000031045	fip1l1a	83	48.235	Astyanax_mexicanus
ENSDARG00000043328	fip1l1a	60	44.749	ENSBTAG00000020653	FIP1L1	87	40.812	Bos_taurus
ENSDARG00000043328	fip1l1a	60	45.082	ENSCHIG00000025903	-	88	38.493	Capra_hircus
ENSDARG00000043328	fip1l1a	84	58.333	ENSCAPG00000009569	-	84	41.161	Cavia_aperea
ENSDARG00000043328	fip1l1a	82	46.798	ENSCPBG00000025019	-	87	39.344	Chrysemys_picta_bellii
ENSDARG00000043328	fip1l1a	50	43.333	ENSCSEG00000006583	fip1l1b	100	41.075	Cynoglossus_semilaevis
ENSDARG00000043328	fip1l1a	100	44.007	ENSCVAG00000023435	fip1l1b	87	41.273	Cyprinodon_variegatus
ENSDARG00000043328	fip1l1a	65	43.443	ENSEASG00005019566	-	87	41.775	Equus_asinus_asinus
ENSDARG00000043328	fip1l1a	100	45.437	ENSELUG00000004607	fip1l1a	100	45.216	Esox_lucius
ENSDARG00000043328	fip1l1a	100	44.938	ENSFHEG00000003843	fip1l1b	87	40.486	Fundulus_heteroclitus
ENSDARG00000043328	fip1l1a	99	36.444	ENSGMOG00000004913	fip1l1b	76	38.517	Gadus_morhua
ENSDARG00000043328	fip1l1a	100	43.257	ENSGAFG00000008253	fip1l1b	87	39.034	Gambusia_affinis
ENSDARG00000043328	fip1l1a	76	46.500	ENSGACG00000015946	fip1l1b	87	47.264	Gasterosteus_aculeatus
ENSDARG00000043328	fip1l1a	84	41.629	ENSGAGG00000009763	-	87	39.344	Gopherus_agassizii
ENSDARG00000043328	fip1l1a	92	48.241	ENSHBUG00000013978	fip1l1b	100	43.031	Haplochromis_burtoni
ENSDARG00000043328	fip1l1a	91	46.154	ENSHCOG00000015834	fip1l1b	99	40.696	Hippocampus_comes
ENSDARG00000043328	fip1l1a	86	40.173	ENSIPUG00000022454	fip1l1b	94	40.000	Ictalurus_punctatus
ENSDARG00000043328	fip1l1a	50	42.244	ENSKMAG00000021938	fip1l1b	87	40.741	Kryptolebias_marmoratus
ENSDARG00000043328	fip1l1a	92	42.633	ENSLBEG00000028819	fip1l1b	100	41.156	Labrus_bergylta
ENSDARG00000043328	fip1l1a	82	60.169	ENSLACG00000011991	fip1l1a	71	60.169	Latimeria_chalumnae
ENSDARG00000043328	fip1l1a	51	41.718	ENSLOCG00000014127	fip1l1b	88	38.780	Lepisosteus_oculatus
ENSDARG00000043328	fip1l1a	92	48.241	ENSMZEG00005023828	fip1l1b	100	43.031	Maylandia_zebra
ENSDARG00000043328	fip1l1a	99	38.068	ENSMMOG00000008262	fip1l1b	99	36.502	Mola_mola
ENSDARG00000043328	fip1l1a	99	38.983	ENSMALG00000000838	fip1l1b	99	41.426	Monopterus_albus
ENSDARG00000043328	fip1l1a	92	48.241	ENSNBRG00000017832	fip1l1b	100	43.031	Neolamprologus_brichardi
ENSDARG00000043328	fip1l1a	100	42.199	ENSONIG00000008785	fip1l1b	100	42.509	Oreochromis_niloticus
ENSDARG00000043328	fip1l1a	86	43.979	ENSOANG00000003384	-	57	54.331	Ornithorhynchus_anatinus
ENSDARG00000043328	fip1l1a	86	40.652	ENSOMEG00000015730	fip1l1b	100	34.846	Oryzias_melastigma
ENSDARG00000043328	fip1l1a	60	45.082	ENSOARG00000018767	-	74	41.791	Ovis_aries
ENSDARG00000043328	fip1l1a	99	39.439	ENSPKIG00000003396	fip1l1b	99	38.330	Paramormyrops_kingsleyae
ENSDARG00000043328	fip1l1a	100	42.251	ENSPMGG00000017028	fip1l1b	87	39.583	Periophthalmus_magnuspinnatus
ENSDARG00000043328	fip1l1a	52	38.462	ENSPEMG00000002025	Fip1l1	89	45.641	Peromyscus_maniculatus_bairdii
ENSDARG00000043328	fip1l1a	100	39.535	ENSPFOG00000014745	fip1l1b	100	38.824	Poecilia_formosa
ENSDARG00000043328	fip1l1a	87	40.644	ENSPLAG00000010954	fip1l1b	87	38.788	Poecilia_latipinna
ENSDARG00000043328	fip1l1a	87	41.449	ENSPMEG00000019187	fip1l1b	87	39.596	Poecilia_mexicana
ENSDARG00000043328	fip1l1a	72	39.733	ENSPREG00000012535	fip1l1b	90	38.369	Poecilia_reticulata
ENSDARG00000043328	fip1l1a	50	41.562	ENSPNYG00000015976	fip1l1b	80	43.137	Pundamilia_nyererei
ENSDARG00000043328	fip1l1a	52	38.037	ENSPNAG00000015341	fip1l1b	68	38.487	Pygocentrus_nattereri
ENSDARG00000043328	fip1l1a	56	60.993	ENSPNAG00000009853	fip1l1a	83	57.312	Pygocentrus_nattereri
ENSDARG00000043328	fip1l1a	64	44.444	ENSSHAG00000015789	-	65	51.337	Sarcophilus_harrisii
ENSDARG00000043328	fip1l1a	89	40.562	ENSSFOG00015017653	fip1l1b	77	43.421	Scleropages_formosus
ENSDARG00000043328	fip1l1a	100	39.394	ENSSMAG00000013444	fip1l1b	100	40.952	Scophthalmus_maximus
ENSDARG00000043328	fip1l1a	89	48.663	ENSSDUG00000004117	fip1l1b	100	41.812	Seriola_dumerili
ENSDARG00000043328	fip1l1a	89	45.699	ENSSLDG00000024099	fip1l1b	100	42.572	Seriola_lalandi_dorsalis
ENSDARG00000043328	fip1l1a	64	43.684	ENSSARG00000001973	-	58	53.968	Sorex_araneus
ENSDARG00000043328	fip1l1a	89	48.128	ENSSPAG00000017564	fip1l1b	100	41.361	Stegastes_partitus
ENSDARG00000043328	fip1l1a	90	49.479	ENSTRUG00000001545	fip1l1b	99	42.077	Takifugu_rubripes
ENSDARG00000043328	fip1l1a	80	46.316	ENSTNIG00000004104	fip1l1b	84	47.783	Tetraodon_nigroviridis
ENSDARG00000043328	fip1l1a	60	44.495	ENSUMAG00000002758	-	79	42.271	Ursus_maritimus
ENSDARG00000043328	fip1l1a	64	43.684	ENSVPAG00000011574	-	68	44.199	Vicugna_pacos
ENSDARG00000043328	fip1l1a	73	42.822	ENSXETG00000011679	fip1l1	80	39.323	Xenopus_tropicalis
ENSDARG00000043328	fip1l1a	100	40.918	ENSXCOG00000013656	fip1l1b	95	43.198	Xiphophorus_couchianus
ENSDARG00000043328	fip1l1a	100	41.608	ENSXMAG00000017620	fip1l1b	87	39.394	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	IEA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	-	IEA	Process