EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000043402 (Gene tree)
Gene ID: 564733
Gene Symbol: zgc:171480
Alias: -
Full Name: zgc:171480
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 2353 bases
Position: chr8:15251448-15253800
Accession: ZDB-GENE-080204-83
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000063716	Mitoc_L55	PF09776.9	7.9e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000063717	-	863	-	ENSDARP00000063716	133 (aa)	-	A8WHP2

Gene Model

Click here to download ENSDARG00000043402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000043402	zgc:171480	80	58.491	ENSAPOG00000002881	zgc:171480	74	58.491	Acanthochromis_polyacanthus
ENSDARG00000043402	zgc:171480	89	56.198	ENSACIG00000001646	zgc:171480	88	56.198	Amphilophus_citrinellus
ENSDARG00000043402	zgc:171480	80	59.434	ENSAOCG00000016155	zgc:171480	74	59.434	Amphiprion_ocellaris
ENSDARG00000043402	zgc:171480	80	59.434	ENSAPEG00000022327	zgc:171480	74	59.434	Amphiprion_percula
ENSDARG00000043402	zgc:171480	92	48.889	ENSATEG00000005625	zgc:171480	98	47.222	Anabas_testudineus
ENSDARG00000043402	zgc:171480	89	54.622	ENSACAG00000006897	-	94	54.622	Anolis_carolinensis
ENSDARG00000043402	zgc:171480	87	55.932	ENSACLG00000005172	zgc:171480	85	55.932	Astatotilapia_calliptera
ENSDARG00000043402	zgc:171480	98	68.462	ENSAMXG00000043839	zgc:171480	99	68.462	Astyanax_mexicanus
ENSDARG00000043402	zgc:171480	82	56.881	ENSCPBG00000001771	-	87	56.881	Chrysemys_picta_bellii
ENSDARG00000043402	zgc:171480	88	54.701	ENSCSEG00000019533	zgc:171480	83	54.701	Cynoglossus_semilaevis
ENSDARG00000043402	zgc:171480	90	59.836	ENSELUG00000007716	zgc:171480	93	59.200	Esox_lucius
ENSDARG00000043402	zgc:171480	73	49.485	ENSFALG00000001083	-	100	48.454	Ficedula_albicollis
ENSDARG00000043402	zgc:171480	81	57.798	ENSFHEG00000000203	zgc:171480	77	58.879	Fundulus_heteroclitus
ENSDARG00000043402	zgc:171480	75	68.000	ENSGMOG00000019009	zgc:171480	98	68.000	Gadus_morhua
ENSDARG00000043402	zgc:171480	89	46.218	ENSGALG00000038820	-	98	46.218	Gallus_gallus
ENSDARG00000043402	zgc:171480	89	56.198	ENSGAFG00000004832	-	84	56.198	Gambusia_affinis
ENSDARG00000043402	zgc:171480	69	66.304	ENSGACG00000002136	zgc:171480	100	66.304	Gasterosteus_aculeatus
ENSDARG00000043402	zgc:171480	95	52.756	ENSGAGG00000001806	-	98	52.756	Gopherus_agassizii
ENSDARG00000043402	zgc:171480	87	55.932	ENSHBUG00000007895	zgc:171480	85	55.932	Haplochromis_burtoni
ENSDARG00000043402	zgc:171480	77	59.615	ENSHCOG00000003526	zgc:171480	57	59.615	Hippocampus_comes
ENSDARG00000043402	zgc:171480	98	64.885	ENSIPUG00000001273	mrpl55	99	64.122	Ictalurus_punctatus
ENSDARG00000043402	zgc:171480	77	61.165	ENSKMAG00000002011	zgc:171480	81	61.165	Kryptolebias_marmoratus
ENSDARG00000043402	zgc:171480	92	59.836	ENSLBEG00000010915	zgc:171480	96	59.836	Labrus_bergylta
ENSDARG00000043402	zgc:171480	92	59.836	ENSLBEG00000016107	-	96	59.836	Labrus_bergylta
ENSDARG00000043402	zgc:171480	89	57.143	ENSLACG00000016281	zgc:171480	90	57.143	Latimeria_chalumnae
ENSDARG00000043402	zgc:171480	80	56.604	ENSMAMG00000022250	zgc:171480	72	56.604	Mastacembelus_armatus
ENSDARG00000043402	zgc:171480	87	52.991	ENSMZEG00005015585	zgc:171480	85	52.991	Maylandia_zebra
ENSDARG00000043402	zgc:171480	89	45.378	ENSMGAG00000002612	-	98	45.378	Meleagris_gallopavo
ENSDARG00000043402	zgc:171480	80	44.340	ENSMMOG00000008740	-	81	44.340	Mola_mola
ENSDARG00000043402	zgc:171480	81	54.630	ENSMALG00000019823	zgc:171480	85	54.630	Monopterus_albus
ENSDARG00000043402	zgc:171480	87	55.085	ENSNBRG00000019447	zgc:171480	85	55.085	Neolamprologus_brichardi
ENSDARG00000043402	zgc:171480	87	55.085	ENSONIG00000007645	zgc:171480	87	55.085	Oreochromis_niloticus
ENSDARG00000043402	zgc:171480	77	53.398	ENSORLG00020006963	zgc:171480	77	53.398	Oryzias_latipes_hni
ENSDARG00000043402	zgc:171480	75	54.000	ENSORLG00015003266	zgc:171480	75	54.000	Oryzias_latipes_hsok
ENSDARG00000043402	zgc:171480	80	53.913	ENSOMEG00000008184	zgc:171480	84	53.913	Oryzias_melastigma
ENSDARG00000043402	zgc:171480	98	54.962	ENSPKIG00000006753	zgc:171480	100	54.962	Paramormyrops_kingsleyae
ENSDARG00000043402	zgc:171480	81	57.407	ENSPSIG00000010893	-	86	57.407	Pelodiscus_sinensis
ENSDARG00000043402	zgc:171480	95	51.908	ENSPMGG00000012657	-	97	51.908	Periophthalmus_magnuspinnatus
ENSDARG00000043402	zgc:171480	69	51.064	ENSPMAG00000000867	zgc:171480	80	49.485	Petromyzon_marinus
ENSDARG00000043402	zgc:171480	86	51.304	ENSPCIG00000021848	-	91	51.304	Phascolarctos_cinereus
ENSDARG00000043402	zgc:171480	77	62.136	ENSPFOG00000012703	zgc:171480	74	62.136	Poecilia_formosa
ENSDARG00000043402	zgc:171480	77	63.107	ENSPREG00000020328	zgc:171480	74	63.107	Poecilia_reticulata
ENSDARG00000043402	zgc:171480	98	67.939	ENSPNAG00000017309	zgc:171480	99	67.939	Pygocentrus_nattereri
ENSDARG00000043402	zgc:171480	89	64.167	ENSSFOG00015015668	mrpl55	92	64.167	Scleropages_formosus
ENSDARG00000043402	zgc:171480	77	59.804	ENSSMAG00000005429	zgc:171480	73	59.804	Scophthalmus_maximus
ENSDARG00000043402	zgc:171480	98	50.360	ENSSDUG00000022556	zgc:171480	95	50.000	Seriola_dumerili
ENSDARG00000043402	zgc:171480	98	51.079	ENSSLDG00000019598	zgc:171480	95	50.714	Seriola_lalandi_dorsalis
ENSDARG00000043402	zgc:171480	81	55.556	ENSSPUG00000000735	-	86	55.556	Sphenodon_punctatus
ENSDARG00000043402	zgc:171480	92	51.880	ENSSPAG00000011598	zgc:171480	94	51.880	Stegastes_partitus
ENSDARG00000043402	zgc:171480	74	58.586	ENSTRUG00000003082	zgc:171480	70	58.586	Takifugu_rubripes
ENSDARG00000043402	zgc:171480	85	56.557	ENSXCOG00000005887	zgc:171480	83	62.745	Xiphophorus_couchianus
ENSDARG00000043402	zgc:171480	89	55.372	ENSXMAG00000007937	zgc:171480	86	55.372	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005762	mitochondrial large ribosomal subunit	21873635.	IBA	Component
GO:0005762	mitochondrial large ribosomal subunit	-	IEA	Component
GO:0006412	translation	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process