EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000043734 (Gene tree)
Gene ID: 553625
Gene Symbol: trmu
Alias: zgc:110555
Full Name: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 14897 bases
Position: chr4:28338642-28353538
Accession: ZDB-GENE-050522-540
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000064218	tRNA_Me_trans	PF03054.16	2.2e-128	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000064219	-	1833	-	ENSDARP00000064218	416 (aa)	-	F1QRX8

Gene Model

Click here to download ENSDARG00000043734's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043734's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000043734	trmu	95	68.766	ENSG00000100416	TRMU	100	75.000	Homo_sapiens
ENSDARG00000043734	trmu	100	75.300	ENSAPOG00000014458	trmu	100	75.300	Acanthochromis_polyacanthus
ENSDARG00000043734	trmu	95	69.444	ENSAMEG00000003319	TRMU	95	69.444	Ailuropoda_melanoleuca
ENSDARG00000043734	trmu	100	72.596	ENSACIG00000002101	trmu	100	72.596	Amphilophus_citrinellus
ENSDARG00000043734	trmu	100	75.300	ENSAOCG00000013155	trmu	100	75.300	Amphiprion_ocellaris
ENSDARG00000043734	trmu	100	75.300	ENSAPEG00000013350	trmu	100	75.300	Amphiprion_percula
ENSDARG00000043734	trmu	100	75.962	ENSATEG00000007814	trmu	100	75.962	Anabas_testudineus
ENSDARG00000043734	trmu	92	68.930	ENSAPLG00000016380	TRMU	98	68.930	Anas_platyrhynchos
ENSDARG00000043734	trmu	99	66.828	ENSACAG00000007720	TRMU	99	66.828	Anolis_carolinensis
ENSDARG00000043734	trmu	99	66.586	ENSANAG00000038053	TRMU	98	66.586	Aotus_nancymaae
ENSDARG00000043734	trmu	100	74.519	ENSACLG00000005395	trmu	98	76.694	Astatotilapia_calliptera
ENSDARG00000043734	trmu	98	78.973	ENSAMXG00000005282	trmu	99	78.973	Astyanax_mexicanus
ENSDARG00000043734	trmu	96	68.329	ENSBTAG00000005595	TRMU	96	68.329	Bos_taurus
ENSDARG00000043734	trmu	92	40.513	WBGene00007114	mttu-1	99	40.513	Caenorhabditis_elegans
ENSDARG00000043734	trmu	95	67.254	ENSCJAG00000000198	TRMU	94	67.254	Callithrix_jacchus
ENSDARG00000043734	trmu	96	69.250	ENSCAFG00000000779	TRMU	94	69.250	Canis_familiaris
ENSDARG00000043734	trmu	96	69.250	ENSCAFG00020009184	TRMU	94	69.250	Canis_lupus_dingo
ENSDARG00000043734	trmu	96	68.080	ENSCHIG00000017074	TRMU	96	68.080	Capra_hircus
ENSDARG00000043734	trmu	96	67.332	ENSTSYG00000003853	TRMU	95	67.332	Carlito_syrichta
ENSDARG00000043734	trmu	95	63.592	ENSCAPG00000013034	TRMU	97	63.592	Cavia_aperea
ENSDARG00000043734	trmu	98	67.157	ENSCPOG00000020780	TRMU	97	67.157	Cavia_porcellus
ENSDARG00000043734	trmu	95	68.514	ENSCCAG00000021641	TRMU	94	68.514	Cebus_capucinus
ENSDARG00000043734	trmu	95	67.254	ENSCATG00000032800	TRMU	94	67.254	Cercocebus_atys
ENSDARG00000043734	trmu	98	68.059	ENSCLAG00000017269	TRMU	97	68.059	Chinchilla_lanigera
ENSDARG00000043734	trmu	95	67.254	ENSCSAG00000005279	TRMU	94	67.254	Chlorocebus_sabaeus
ENSDARG00000043734	trmu	89	68.817	ENSCPBG00000011621	TRMU	93	68.817	Chrysemys_picta_bellii
ENSDARG00000043734	trmu	93	45.078	ENSCING00000019371	-	95	45.078	Ciona_intestinalis
ENSDARG00000043734	trmu	95	67.254	ENSCANG00000041645	TRMU	94	67.254	Colobus_angolensis_palliatus
ENSDARG00000043734	trmu	99	66.667	ENSCGRG00001001739	Trmu	99	66.667	Cricetulus_griseus_chok1gshd
ENSDARG00000043734	trmu	99	62.110	ENSCGRG00000002781	Trmu	100	62.110	Cricetulus_griseus_crigri
ENSDARG00000043734	trmu	99	70.531	ENSCSEG00000012382	trmu	99	70.531	Cynoglossus_semilaevis
ENSDARG00000043734	trmu	100	74.519	ENSCVAG00000001366	trmu	100	74.519	Cyprinodon_variegatus
ENSDARG00000043734	trmu	54	58.850	ENSDNOG00000047245	-	79	58.850	Dasypus_novemcinctus
ENSDARG00000043734	trmu	97	67.494	ENSDORG00000007455	Trmu	98	67.494	Dipodomys_ordii
ENSDARG00000043734	trmu	93	40.722	FBgn0040337	CG3021	96	40.722	Drosophila_melanogaster
ENSDARG00000043734	trmu	94	53.904	ENSEBUG00000007454	trmu	99	53.623	Eptatretus_burgeri
ENSDARG00000043734	trmu	96	68.250	ENSEASG00005021725	TRMU	95	68.250	Equus_asinus_asinus
ENSDARG00000043734	trmu	96	68.250	ENSECAG00000000467	TRMU	95	68.250	Equus_caballus
ENSDARG00000043734	trmu	70	50.000	ENSEEUG00000000074	-	70	50.000	Erinaceus_europaeus
ENSDARG00000043734	trmu	100	75.300	ENSELUG00000009464	trmu	99	77.989	Esox_lucius
ENSDARG00000043734	trmu	96	70.101	ENSFCAG00000006533	TRMU	95	70.101	Felis_catus
ENSDARG00000043734	trmu	91	68.217	ENSFALG00000010035	TRMU	98	68.217	Ficedula_albicollis
ENSDARG00000043734	trmu	91	68.338	ENSFDAG00000017472	TRMU	96	68.338	Fukomys_damarensis
ENSDARG00000043734	trmu	100	74.038	ENSFHEG00000003162	trmu	98	76.839	Fundulus_heteroclitus
ENSDARG00000043734	trmu	95	68.844	ENSGMOG00000001323	trmu	98	68.844	Gadus_morhua
ENSDARG00000043734	trmu	97	69.024	ENSGALG00000031922	TRMU	97	69.024	Gallus_gallus
ENSDARG00000043734	trmu	100	75.721	ENSGAFG00000013331	trmu	99	75.721	Gambusia_affinis
ENSDARG00000043734	trmu	100	71.868	ENSGACG00000019024	trmu	100	71.868	Gasterosteus_aculeatus
ENSDARG00000043734	trmu	95	68.766	ENSGGOG00000000203	TRMU	94	68.766	Gorilla_gorilla
ENSDARG00000043734	trmu	100	74.038	ENSHBUG00000023421	trmu	98	76.152	Haplochromis_burtoni
ENSDARG00000043734	trmu	98	67.402	ENSHGLG00000009278	TRMU	97	67.402	Heterocephalus_glaber_female
ENSDARG00000043734	trmu	98	67.402	ENSHGLG00100018863	TRMU	97	67.402	Heterocephalus_glaber_male
ENSDARG00000043734	trmu	99	75.121	ENSHCOG00000013459	trmu	99	75.121	Hippocampus_comes
ENSDARG00000043734	trmu	96	80.451	ENSIPUG00000009785	trmu	98	80.451	Ictalurus_punctatus
ENSDARG00000043734	trmu	98	66.993	ENSSTOG00000010993	TRMU	97	66.993	Ictidomys_tridecemlineatus
ENSDARG00000043734	trmu	99	66.187	ENSJJAG00000000667	Trmu	100	66.187	Jaculus_jaculus
ENSDARG00000043734	trmu	100	73.317	ENSKMAG00000008516	trmu	100	73.317	Kryptolebias_marmoratus
ENSDARG00000043734	trmu	100	76.202	ENSLBEG00000018831	trmu	100	76.202	Labrus_bergylta
ENSDARG00000043734	trmu	95	73.485	ENSLACG00000013713	TRMU	95	73.485	Latimeria_chalumnae
ENSDARG00000043734	trmu	95	78.173	ENSLOCG00000016066	trmu	94	78.173	Lepisosteus_oculatus
ENSDARG00000043734	trmu	96	58.065	ENSLAFG00000005129	TRMU	96	58.065	Loxodonta_africana
ENSDARG00000043734	trmu	95	67.254	ENSMFAG00000039767	TRMU	94	67.254	Macaca_fascicularis
ENSDARG00000043734	trmu	95	67.254	ENSMMUG00000000807	TRMU	94	67.254	Macaca_mulatta
ENSDARG00000043734	trmu	95	67.254	ENSMNEG00000028164	TRMU	94	67.254	Macaca_nemestrina
ENSDARG00000043734	trmu	95	67.254	ENSMLEG00000033884	TRMU	94	67.254	Mandrillus_leucophaeus
ENSDARG00000043734	trmu	100	74.038	ENSMAMG00000004717	trmu	100	74.038	Mastacembelus_armatus
ENSDARG00000043734	trmu	100	74.519	ENSMZEG00005015797	trmu	100	74.519	Maylandia_zebra
ENSDARG00000043734	trmu	78	67.267	ENSMGAG00000007550	TRMU	97	67.267	Meleagris_gallopavo
ENSDARG00000043734	trmu	99	66.187	ENSMAUG00000022282	Trmu	100	66.187	Mesocricetus_auratus
ENSDARG00000043734	trmu	96	69.077	ENSMICG00000029046	TRMU	97	69.077	Microcebus_murinus
ENSDARG00000043734	trmu	99	66.906	ENSMOCG00000014641	Trmu	100	66.906	Microtus_ochrogaster
ENSDARG00000043734	trmu	100	74.519	ENSMMOG00000007229	trmu	100	74.519	Mola_mola
ENSDARG00000043734	trmu	98	65.037	ENSMODG00000007433	TRMU	96	65.037	Monodelphis_domestica
ENSDARG00000043734	trmu	100	74.760	ENSMALG00000007721	trmu	100	74.760	Monopterus_albus
ENSDARG00000043734	trmu	99	66.024	MGP_CAROLIEiJ_G0020134	Trmu	99	66.024	Mus_caroli
ENSDARG00000043734	trmu	96	68.000	ENSMUSG00000022386	Trmu	96	68.000	Mus_musculus
ENSDARG00000043734	trmu	96	67.750	MGP_PahariEiJ_G0020139	Trmu	96	67.750	Mus_pahari
ENSDARG00000043734	trmu	96	68.000	MGP_SPRETEiJ_G0021031	Trmu	96	68.000	Mus_spretus
ENSDARG00000043734	trmu	96	68.500	ENSMPUG00000002523	TRMU	95	68.500	Mustela_putorius_furo
ENSDARG00000043734	trmu	99	66.425	ENSNGAG00000005132	Trmu	99	66.425	Nannospalax_galili
ENSDARG00000043734	trmu	100	74.519	ENSNBRG00000022690	trmu	100	74.519	Neolamprologus_brichardi
ENSDARG00000043734	trmu	97	67.407	ENSNLEG00000015773	TRMU	96	67.407	Nomascus_leucogenys
ENSDARG00000043734	trmu	79	59.451	ENSMEUG00000000216	TRMU	99	59.451	Notamacropus_eugenii
ENSDARG00000043734	trmu	98	67.647	ENSODEG00000014745	TRMU	97	67.647	Octodon_degus
ENSDARG00000043734	trmu	100	74.760	ENSONIG00000009821	trmu	100	74.760	Oreochromis_niloticus
ENSDARG00000043734	trmu	88	67.297	ENSOANG00000001891	TRMU	94	67.297	Ornithorhynchus_anatinus
ENSDARG00000043734	trmu	90	67.112	ENSOCUG00000003664	TRMU	94	65.816	Oryctolagus_cuniculus
ENSDARG00000043734	trmu	100	70.913	ENSORLG00000019015	trmu	99	70.913	Oryzias_latipes
ENSDARG00000043734	trmu	100	70.913	ENSORLG00020006830	trmu	99	70.913	Oryzias_latipes_hni
ENSDARG00000043734	trmu	100	70.913	ENSORLG00015003907	trmu	99	70.913	Oryzias_latipes_hsok
ENSDARG00000043734	trmu	54	73.661	ENSOMEG00000015541	trmu	81	73.661	Oryzias_melastigma
ENSDARG00000043734	trmu	97	67.407	ENSOGAG00000008096	TRMU	97	67.407	Otolemur_garnettii
ENSDARG00000043734	trmu	91	64.737	ENSOARG00000019475	TRMU	93	64.737	Ovis_aries
ENSDARG00000043734	trmu	95	68.262	ENSPPAG00000033944	TRMU	94	68.262	Pan_paniscus
ENSDARG00000043734	trmu	96	69.500	ENSPPRG00000004197	TRMU	95	69.500	Panthera_pardus
ENSDARG00000043734	trmu	65	71.747	ENSPTIG00000014122	TRMU	97	72.243	Panthera_tigris_altaica
ENSDARG00000043734	trmu	95	68.262	ENSPTRG00000014510	TRMU	94	68.262	Pan_troglodytes
ENSDARG00000043734	trmu	98	66.093	ENSPANG00000023074	TRMU	95	65.470	Papio_anubis
ENSDARG00000043734	trmu	100	75.962	ENSPKIG00000002849	trmu	100	75.962	Paramormyrops_kingsleyae
ENSDARG00000043734	trmu	87	69.972	ENSPSIG00000013020	TRMU	95	69.972	Pelodiscus_sinensis
ENSDARG00000043734	trmu	95	76.962	ENSPMGG00000004083	trmu	95	76.962	Periophthalmus_magnuspinnatus
ENSDARG00000043734	trmu	99	66.187	ENSPEMG00000014007	Trmu	100	66.187	Peromyscus_maniculatus_bairdii
ENSDARG00000043734	trmu	93	68.135	ENSPCIG00000009923	TRMU	92	67.949	Phascolarctos_cinereus
ENSDARG00000043734	trmu	97	71.535	ENSPFOG00000008197	trmu	90	71.535	Poecilia_formosa
ENSDARG00000043734	trmu	99	74.396	ENSPLAG00000008414	trmu	99	74.396	Poecilia_latipinna
ENSDARG00000043734	trmu	100	74.519	ENSPMEG00000004326	trmu	100	74.519	Poecilia_mexicana
ENSDARG00000043734	trmu	99	75.362	ENSPREG00000007980	trmu	99	75.362	Poecilia_reticulata
ENSDARG00000043734	trmu	95	68.514	ENSPPYG00000011949	TRMU	94	68.514	Pongo_abelii
ENSDARG00000043734	trmu	88	60.763	ENSPCAG00000013462	TRMU	94	60.763	Procavia_capensis
ENSDARG00000043734	trmu	96	68.329	ENSPCOG00000016539	TRMU	96	68.329	Propithecus_coquereli
ENSDARG00000043734	trmu	96	62.250	ENSPVAG00000013202	TRMU	96	62.250	Pteropus_vampyrus
ENSDARG00000043734	trmu	100	74.519	ENSPNYG00000005629	trmu	100	74.519	Pundamilia_nyererei
ENSDARG00000043734	trmu	95	81.013	ENSPNAG00000006339	trmu	93	81.013	Pygocentrus_nattereri
ENSDARG00000043734	trmu	99	66.024	ENSRNOG00000016465	Trmu	99	66.024	Rattus_norvegicus
ENSDARG00000043734	trmu	95	67.003	ENSRBIG00000038973	TRMU	94	67.003	Rhinopithecus_bieti
ENSDARG00000043734	trmu	95	67.254	ENSRROG00000004267	TRMU	94	67.254	Rhinopithecus_roxellana
ENSDARG00000043734	trmu	91	31.095	YDL033C	SLM3	91	31.095	Saccharomyces_cerevisiae
ENSDARG00000043734	trmu	95	68.514	ENSSBOG00000030184	TRMU	94	68.514	Saimiri_boliviensis_boliviensis
ENSDARG00000043734	trmu	87	77.500	ENSSFOG00015020664	trmu	94	77.500	Scleropages_formosus
ENSDARG00000043734	trmu	100	73.558	ENSSMAG00000019450	trmu	100	73.558	Scophthalmus_maximus
ENSDARG00000043734	trmu	100	74.279	ENSSDUG00000011913	trmu	100	74.279	Seriola_dumerili
ENSDARG00000043734	trmu	100	74.279	ENSSLDG00000011684	trmu	100	74.279	Seriola_lalandi_dorsalis
ENSDARG00000043734	trmu	95	59.137	ENSSPUG00000017123	TRMU	93	59.137	Sphenodon_punctatus
ENSDARG00000043734	trmu	100	73.077	ENSSPAG00000021875	trmu	100	73.077	Stegastes_partitus
ENSDARG00000043734	trmu	96	68.250	ENSSSCG00000000007	TRMU	95	68.250	Sus_scrofa
ENSDARG00000043734	trmu	89	70.430	ENSTGUG00000003663	-	99	70.430	Taeniopygia_guttata
ENSDARG00000043734	trmu	99	74.334	ENSTRUG00000001231	trmu	100	74.334	Takifugu_rubripes
ENSDARG00000043734	trmu	99	73.012	ENSTNIG00000010484	trmu	98	73.012	Tetraodon_nigroviridis
ENSDARG00000043734	trmu	73	51.240	ENSTBEG00000011276	-	78	51.240	Tupaia_belangeri
ENSDARG00000043734	trmu	95	68.514	ENSTTRG00000004160	TRMU	94	68.514	Tursiops_truncatus
ENSDARG00000043734	trmu	70	71.134	ENSUAMG00000024825	TRMU	97	71.134	Ursus_americanus
ENSDARG00000043734	trmu	94	56.633	ENSUMAG00000019079	TRMU	97	71.094	Ursus_maritimus
ENSDARG00000043734	trmu	53	62.100	ENSVPAG00000000685	-	100	62.100	Vicugna_pacos
ENSDARG00000043734	trmu	96	68.500	ENSVVUG00000024963	TRMU	95	68.500	Vulpes_vulpes
ENSDARG00000043734	trmu	95	71.106	ENSXETG00000023304	trmu	93	71.106	Xenopus_tropicalis
ENSDARG00000043734	trmu	99	73.747	ENSXCOG00000015105	trmu	99	73.747	Xiphophorus_couchianus
ENSDARG00000043734	trmu	99	75.604	ENSXMAG00000006697	trmu	99	75.604	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	-	IEA	Function
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002143	tRNA wobble position uridine thiolation	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016783	sulfurtransferase activity	-	IEA	Function