EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000043873 (Gene tree)
Gene ID: 327404
Gene Symbol: arid4a
Alias: fc43f03|fi11g07|fi14h03|wu:fc43f03|wu:fi06c05|wu:fi11g07|wu:fi14h03|zgc:110391
Full Name: AT rich interactive domain 4A (RBP1-like)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 40584 bases
Position: chr17:11377970-11418553
Accession: ZDB-GENE-050809-105
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000094005	Tudor-knot	PF11717.8	6e-13	1	1
ENSDARP00000064411	Tudor-knot	PF11717.8	1.1e-12	1	1
ENSDARP00000126363	Tudor-knot	PF11717.8	1.2e-12	1	1
ENSDARP00000108603	Tudor-knot	PF11717.8	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000151847	-	5727	XM_005158629	ENSDARP00000126363	1332 (aa)	XP_005158686	K7DY37
ENSDART00000128291	-	4068	-	ENSDARP00000108603	1355 (aa)	-	F1QWQ1
ENSDART00000064412	-	3687	-	ENSDARP00000064411	1196 (aa)	-	Q499A1
ENSDART00000103228	-	2172	-	ENSDARP00000094005	671 (aa)	-	E7FFB4

Gene Model

Click here to download ENSDARG00000043873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043873's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000043873	arid4a	98	62.027	ENSG00000032219	ARID4A	100	87.037	Homo_sapiens
ENSDARG00000043873	arid4a	98	61.919	ENSAPOG00000018856	arid4a	71	69.679	Acanthochromis_polyacanthus
ENSDARG00000043873	arid4a	95	60.187	ENSACIG00000021943	-	95	66.191	Amphilophus_citrinellus
ENSDARG00000043873	arid4a	98	57.958	ENSAOCG00000004790	arid4a	93	63.984	Amphiprion_ocellaris
ENSDARG00000043873	arid4a	100	62.225	ENSATEG00000014386	arid4a	88	58.990	Anabas_testudineus
ENSDARG00000043873	arid4a	98	61.876	ENSANAG00000037559	ARID4A	70	68.283	Aotus_nancymaae
ENSDARG00000043873	arid4a	96	52.261	ENSACLG00000005837	arid4a	84	61.303	Astatotilapia_calliptera
ENSDARG00000043873	arid4a	73	77.301	ENSAMXG00000000379	arid4a	99	69.458	Astyanax_mexicanus
ENSDARG00000043873	arid4a	98	61.725	ENSCJAG00000018764	ARID4A	70	68.283	Callithrix_jacchus
ENSDARG00000043873	arid4a	100	51.141	ENSCAFG00020008690	ARID4A	93	65.455	Canis_lupus_dingo
ENSDARG00000043873	arid4a	98	59.091	ENSCCAG00000019639	ARID4A	52	73.684	Cebus_capucinus
ENSDARG00000043873	arid4a	98	61.725	ENSCATG00000041635	ARID4A	70	68.081	Cercocebus_atys
ENSDARG00000043873	arid4a	92	69.512	ENSCHOG00000003408	ARID4A	52	67.073	Choloepus_hoffmanni
ENSDARG00000043873	arid4a	79	65.185	ENSCPBG00000024815	ARID4A	100	52.916	Chrysemys_picta_bellii
ENSDARG00000043873	arid4a	98	61.840	ENSCANG00000034778	ARID4A	93	67.879	Colobus_angolensis_palliatus
ENSDARG00000043873	arid4a	72	67.901	ENSCGRG00001018168	Arid4a	55	61.210	Cricetulus_griseus_chok1gshd
ENSDARG00000043873	arid4a	72	67.629	ENSCGRG00000005293	Arid4a	55	61.019	Cricetulus_griseus_crigri
ENSDARG00000043873	arid4a	99	62.389	ENSCSEG00000011930	arid4a	74	64.954	Cynoglossus_semilaevis
ENSDARG00000043873	arid4a	71	69.691	ENSDNOG00000004090	ARID4A	50	60.902	Dasypus_novemcinctus
ENSDARG00000043873	arid4a	61	86.364	ENSETEG00000014494	ARID4A	62	65.041	Echinops_telfairi
ENSDARG00000043873	arid4a	71	68.880	ENSEASG00005016222	ARID4A	54	45.157	Equus_asinus_asinus
ENSDARG00000043873	arid4a	71	68.880	ENSECAG00000019256	ARID4A	55	45.157	Equus_caballus
ENSDARG00000043873	arid4a	99	56.101	ENSEEUG00000001510	ARID4A	71	61.284	Erinaceus_europaeus
ENSDARG00000043873	arid4a	99	70.132	ENSELUG00000003087	arid4a	100	61.633	Esox_lucius
ENSDARG00000043873	arid4a	98	60.503	ENSFDAG00000005958	-	63	67.380	Fukomys_damarensis
ENSDARG00000043873	arid4a	70	71.327	ENSFHEG00000004741	arid4a	72	64.671	Fundulus_heteroclitus
ENSDARG00000043873	arid4a	73	77.465	ENSGMOG00000017334	-	61	73.381	Gadus_morhua
ENSDARG00000043873	arid4a	86	74.463	ENSGACG00000004018	arid4a	96	66.598	Gasterosteus_aculeatus
ENSDARG00000043873	arid4a	79	65.000	ENSGAGG00000012085	ARID4A	100	54.072	Gopherus_agassizii
ENSDARG00000043873	arid4a	98	62.027	ENSGGOG00000027092	ARID4A	93	68.485	Gorilla_gorilla
ENSDARG00000043873	arid4a	100	57.184	ENSKMAG00000018271	arid4a	59	43.953	Kryptolebias_marmoratus
ENSDARG00000043873	arid4a	99	67.878	ENSLOCG00000009355	arid4a	100	59.667	Lepisosteus_oculatus
ENSDARG00000043873	arid4a	98	61.725	ENSMFAG00000037044	ARID4A	70	68.081	Macaca_fascicularis
ENSDARG00000043873	arid4a	98	61.725	ENSMMUG00000003514	ARID4A	70	68.081	Macaca_mulatta
ENSDARG00000043873	arid4a	98	61.725	ENSMNEG00000037476	ARID4A	70	68.081	Macaca_nemestrina
ENSDARG00000043873	arid4a	98	61.725	ENSMLEG00000043095	ARID4A	70	68.081	Mandrillus_leucophaeus
ENSDARG00000043873	arid4a	75	55.278	ENSMAMG00000006769	arid4a	83	55.179	Mastacembelus_armatus
ENSDARG00000043873	arid4a	96	52.261	ENSMZEG00005017186	arid4a	84	61.303	Maylandia_zebra
ENSDARG00000043873	arid4a	72	64.536	ENSMAUG00000016160	Arid4a	53	57.716	Mesocricetus_auratus
ENSDARG00000043873	arid4a	100	48.230	ENSMICG00000011761	ARID4A	70	68.081	Microcebus_murinus
ENSDARG00000043873	arid4a	98	62.179	ENSMPUG00000006137	ARID4A	55	61.898	Mustela_putorius_furo
ENSDARG00000043873	arid4a	98	61.876	ENSNLEG00000013149	ARID4A	69	69.565	Nomascus_leucogenys
ENSDARG00000043873	arid4a	99	63.102	ENSOANG00000011836	ARID4A	50	68.560	Ornithorhynchus_anatinus
ENSDARG00000043873	arid4a	75	73.418	ENSORLG00020001443	arid4a	96	80.303	Oryzias_latipes_hni
ENSDARG00000043873	arid4a	98	62.027	ENSPPAG00000042713	ARID4A	93	68.485	Pan_paniscus
ENSDARG00000043873	arid4a	98	62.027	ENSPTRG00000006393	ARID4A	93	68.485	Pan_troglodytes
ENSDARG00000043873	arid4a	98	61.725	ENSPANG00000022390	ARID4A	70	68.081	Papio_anubis
ENSDARG00000043873	arid4a	79	63.720	ENSPSIG00000014845	ARID4A	100	52.715	Pelodiscus_sinensis
ENSDARG00000043873	arid4a	72	67.355	ENSPEMG00000008231	Arid4a	50	60.395	Peromyscus_maniculatus_bairdii
ENSDARG00000043873	arid4a	63	73.159	ENSPFOG00000018637	arid4a	65	64.659	Poecilia_formosa
ENSDARG00000043873	arid4a	67	72.877	ENSPLAG00000003432	arid4a	66	64.542	Poecilia_latipinna
ENSDARG00000043873	arid4a	69	73.113	ENSPMEG00000010607	arid4a	66	64.741	Poecilia_mexicana
ENSDARG00000043873	arid4a	70	58.686	ENSPCAG00000002099	ARID4A	52	68.984	Procavia_capensis
ENSDARG00000043873	arid4a	100	48.296	ENSPCOG00000013924	ARID4A	70	67.879	Propithecus_coquereli
ENSDARG00000043873	arid4a	98	55.891	ENSPNYG00000009221	arid4a	83	61.089	Pundamilia_nyererei
ENSDARG00000043873	arid4a	79	77.425	ENSPNAG00000000710	arid4a	100	69.949	Pygocentrus_nattereri
ENSDARG00000043873	arid4a	98	61.422	ENSRROG00000034002	ARID4A	93	67.879	Rhinopithecus_roxellana
ENSDARG00000043873	arid4a	98	62.179	ENSSBOG00000027453	ARID4A	70	68.485	Saimiri_boliviensis_boliviensis
ENSDARG00000043873	arid4a	76	75.581	ENSSMAG00000012268	arid4a	94	66.461	Scophthalmus_maximus
ENSDARG00000043873	arid4a	98	51.121	ENSSDUG00000000343	arid4a	93	58.000	Seriola_dumerili
ENSDARG00000043873	arid4a	68	62.651	ENSSLDG00000022684	arid4a	88	62.651	Seriola_lalandi_dorsalis
ENSDARG00000043873	arid4a	71	67.155	ENSSARG00000006966	ARID4A	55	45.893	Sorex_araneus
ENSDARG00000043873	arid4a	100	60.914	ENSSPAG00000004467	arid4a	81	59.245	Stegastes_partitus
ENSDARG00000043873	arid4a	79	65.809	ENSTGUG00000013032	-	83	62.707	Taeniopygia_guttata
ENSDARG00000043873	arid4a	100	61.856	ENSTRUG00000008557	arid4a	95	66.531	Takifugu_rubripes
ENSDARG00000043873	arid4a	100	58.773	ENSTNIG00000002593	arid4a	54	38.882	Tetraodon_nigroviridis
ENSDARG00000043873	arid4a	100	49.414	ENSUAMG00000007706	ARID4A	92	66.253	Ursus_americanus
ENSDARG00000043873	arid4a	72	64.523	ENSVPAG00000003645	ARID4A	76	63.434	Vicugna_pacos
ENSDARG00000043873	arid4a	98	60.000	ENSXETG00000011968	arid4a	74	65.377	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function