EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000043960 (Gene tree)
Gene ID
406587
Gene Symbol
rpf2
Alias
bxdc1|ik:tdsubc_1a3|wu:fe17d08|wu:fj16d06|xx:tdsubc_1a3|zgc:77150
Full Name
ribosome production factor 2 homolog
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
4100 bases
Position
chr20:150890-154989
Accession
ZDB-GENE-040426-2501
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000064541BrixPF04427.182.1e-4511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000064542-1808-ENSDARP00000064541308 (aa)-Q6P0C5
Gene Model
Click here to download ENSDARG00000043960's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043960's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000043960rpf29971.711ENSG00000197498RPF29874.641Homo_sapiens
ENSDARG00000043960rpf29877.124ENSAPOG00000005714rpf29977.124Acanthochromis_polyacanthus
ENSDARG00000043960rpf29969.737ENSAMEG00000015753RPF210069.281Ailuropoda_melanoleuca
ENSDARG00000043960rpf25174.684ENSACIG00000006659rpf28979.195Amphilophus_citrinellus
ENSDARG00000043960rpf29975.649ENSAOCG00000005173rpf210075.649Amphiprion_ocellaris
ENSDARG00000043960rpf29975.649ENSAPEG00000004003rpf210075.649Amphiprion_percula
ENSDARG00000043960rpf29476.897ENSATEG00000012818rpf29476.897Anabas_testudineus
ENSDARG00000043960rpf28775.655ENSAPLG00000008812RPF29875.655Anas_platyrhynchos
ENSDARG00000043960rpf29870.297ENSACAG00000011270RPF29870.297Anolis_carolinensis
ENSDARG00000043960rpf29954.902ENSANAG00000033736-10055.556Aotus_nancymaae
ENSDARG00000043960rpf29867.219ENSANAG00000034834-9967.219Aotus_nancymaae
ENSDARG00000043960rpf29967.763ENSANAG00000026549-9967.763Aotus_nancymaae
ENSDARG00000043960rpf29754.027ENSANAG00000021067-9653.356Aotus_nancymaae
ENSDARG00000043960rpf29357.692ENSANAG00000025459-9256.643Aotus_nancymaae
ENSDARG00000043960rpf29876.159ENSAMXG00000035201rpf29876.159Astyanax_mexicanus
ENSDARG00000043960rpf29971.053ENSBTAG00000016584RPF210070.588Bos_taurus
ENSDARG00000043960rpf29541.980WBGene00021830Y54E10A.109741.980Caenorhabditis_elegans
ENSDARG00000043960rpf29971.711ENSCJAG00000038330RPF210071.242Callithrix_jacchus
ENSDARG00000043960rpf29969.408ENSCAFG00000003918RPF210068.954Canis_familiaris
ENSDARG00000043960rpf29966.776ENSCHIG00000022499RPF210066.340Capra_hircus
ENSDARG00000043960rpf29572.449ENSTSYG00000013924RPF29672.449Carlito_syrichta
ENSDARG00000043960rpf29755.853ENSCAPG00000014257RPF29755.184Cavia_aperea
ENSDARG00000043960rpf29969.608ENSCPOG00000006797RPF210069.608Cavia_porcellus
ENSDARG00000043960rpf29062.143ENSCCAG00000028906-9764.069Cebus_capucinus
ENSDARG00000043960rpf29971.382ENSCCAG00000030864-10070.915Cebus_capucinus
ENSDARG00000043960rpf29956.579ENSCCAG00000028553-9855.921Cebus_capucinus
ENSDARG00000043960rpf29870.199ENSCCAG00000030365-9970.199Cebus_capucinus
ENSDARG00000043960rpf29956.678ENSCATG00000034352-10056.678Cercocebus_atys
ENSDARG00000043960rpf28759.410ENSCATG00000029725-9959.410Cercocebus_atys
ENSDARG00000043960rpf29756.106ENSCLAG00000010874-10056.106Chinchilla_lanigera
ENSDARG00000043960rpf28650.562ENSCLAG00000013252-9850.562Chinchilla_lanigera
ENSDARG00000043960rpf29969.281ENSCLAG00000010393-10069.281Chinchilla_lanigera
ENSDARG00000043960rpf29468.276ENSCHOG00000005865RPF29468.276Choloepus_hoffmanni
ENSDARG00000043960rpf29871.523ENSCPBG00000006504RPF29871.523Chrysemys_picta_bellii
ENSDARG00000043960rpf29157.651ENSCING00000008090-9157.651Ciona_intestinalis
ENSDARG00000043960rpf29659.122ENSCSAVG00000010672-9859.122Ciona_savignyi
ENSDARG00000043960rpf29971.382ENSCANG00000030665RPF210070.915Colobus_angolensis_palliatus
ENSDARG00000043960rpf29968.954ENSCGRG00001007331-10068.954Cricetulus_griseus_chok1gshd
ENSDARG00000043960rpf29857.285ENSCGRG00001005262-9757.285Cricetulus_griseus_chok1gshd
ENSDARG00000043960rpf29770.134ENSCGRG00000006083Rpf29770.134Cricetulus_griseus_crigri
ENSDARG00000043960rpf29477.586ENSCSEG00000015725rpf29677.586Cynoglossus_semilaevis
ENSDARG00000043960rpf29976.721ENSCVAG00000001072rpf210076.721Cyprinodon_variegatus
ENSDARG00000043960rpf26171.809ENSDNOG00000039270RPF29172.193Dasypus_novemcinctus
ENSDARG00000043960rpf25670.968ENSDORG00000026915Rpf29971.739Dipodomys_ordii
ENSDARG00000043960rpf29148.399FBgn0038585Non38848.399Drosophila_melanogaster
ENSDARG00000043960rpf29355.944ENSEBUG00000003640rpf28755.944Eptatretus_burgeri
ENSDARG00000043960rpf29470.345ENSEASG00005006927-9967.434Equus_asinus_asinus
ENSDARG00000043960rpf29473.793ENSECAG00000017121RPF29970.724Equus_caballus
ENSDARG00000043960rpf29755.034ENSEEUG00000006169RPF210055.034Erinaceus_europaeus
ENSDARG00000043960rpf29379.443ENSELUG00000018518rpf29479.443Esox_lucius
ENSDARG00000043960rpf29969.408ENSFCAG00000001527RPF210068.954Felis_catus
ENSDARG00000043960rpf29872.185ENSFALG00000010816RPF29872.185Ficedula_albicollis
ENSDARG00000043960rpf28858.889ENSFDAG00000016721-10058.889Fukomys_damarensis
ENSDARG00000043960rpf29969.737ENSFDAG00000005811-10069.281Fukomys_damarensis
ENSDARG00000043960rpf29876.568ENSFHEG00000011243rpf29876.568Fundulus_heteroclitus
ENSDARG00000043960rpf29665.101ENSGMOG00000002521rpf210065.101Gadus_morhua
ENSDARG00000043960rpf29972.697ENSGALG00000037087RPF29972.697Gallus_gallus
ENSDARG00000043960rpf29976.974ENSGAFG00000009537rpf29976.974Gambusia_affinis
ENSDARG00000043960rpf29875.248ENSGACG00000006507rpf29875.248Gasterosteus_aculeatus
ENSDARG00000043960rpf29866.887ENSGAGG00000016221RPF29866.887Gopherus_agassizii
ENSDARG00000043960rpf29268.440ENSGGOG00000024187-9968.440Gorilla_gorilla
ENSDARG00000043960rpf29960.197ENSGGOG00000001469RPF210059.477Gorilla_gorilla
ENSDARG00000043960rpf29875.248ENSHBUG00000021805rpf29875.248Haplochromis_burtoni
ENSDARG00000043960rpf29267.021ENSHGLG00000012697-9867.021Heterocephalus_glaber_female
ENSDARG00000043960rpf29970.395ENSHGLG00000001322RPF29970.395Heterocephalus_glaber_female
ENSDARG00000043960rpf29665.085ENSHGLG00000012500-7865.763Heterocephalus_glaber_female
ENSDARG00000043960rpf29267.021ENSHGLG00100000462-9867.021Heterocephalus_glaber_male
ENSDARG00000043960rpf29358.392ENSHGLG00100002981-10058.392Heterocephalus_glaber_male
ENSDARG00000043960rpf29970.395ENSHGLG00100012131RPF29970.395Heterocephalus_glaber_male
ENSDARG00000043960rpf28857.353ENSHGLG00100009310-10057.721Heterocephalus_glaber_male
ENSDARG00000043960rpf29664.746ENSHGLG00100012473-9565.424Heterocephalus_glaber_male
ENSDARG00000043960rpf29875.578ENSHCOG00000000225rpf29975.578Hippocampus_comes
ENSDARG00000043960rpf29869.205ENSIPUG00000016288rpf29482.723Ictalurus_punctatus
ENSDARG00000043960rpf29954.605ENSSTOG00000013114RPF29954.605Ictidomys_tridecemlineatus
ENSDARG00000043960rpf29666.443ENSJJAG00000009092Rpf210065.018Jaculus_jaculus
ENSDARG00000043960rpf29479.310ENSKMAG00000014609rpf29479.310Kryptolebias_marmoratus
ENSDARG00000043960rpf29576.871ENSLBEG00000011907rpf29569.048Labrus_bergylta
ENSDARG00000043960rpf29473.196ENSLACG00000003942RPF29473.196Latimeria_chalumnae
ENSDARG00000043960rpf29875.405ENSLOCG00000016992rpf29975.405Lepisosteus_oculatus
ENSDARG00000043960rpf29474.138ENSLAFG00000018219RPF29474.138Loxodonta_africana
ENSDARG00000043960rpf28758.456ENSMFAG00000036119-9958.456Macaca_fascicularis
ENSDARG00000043960rpf29971.711ENSMFAG00000000417RPF210071.242Macaca_fascicularis
ENSDARG00000043960rpf29971.711ENSMMUG00000021532RPF29875.120Macaca_mulatta
ENSDARG00000043960rpf29857.003ENSMMUG00000042376-9957.003Macaca_mulatta
ENSDARG00000043960rpf29960.526ENSMNEG00000031683RPF29960.197Macaca_nemestrina
ENSDARG00000043960rpf29858.278ENSMLEG00000042472-9958.278Mandrillus_leucophaeus
ENSDARG00000043960rpf29875.248ENSMAMG00000004267rpf29875.248Mastacembelus_armatus
ENSDARG00000043960rpf29875.248ENSMZEG00005015632rpf29875.248Maylandia_zebra
ENSDARG00000043960rpf29972.368ENSMGAG00000013429RPF29575.000Meleagris_gallopavo
ENSDARG00000043960rpf28146.586ENSMAUG00000005049Rpf29946.586Mesocricetus_auratus
ENSDARG00000043960rpf29759.603ENSMICG00000028979-9859.603Microcebus_murinus
ENSDARG00000043960rpf29971.711ENSMICG00000032086-10071.242Microcebus_murinus
ENSDARG00000043960rpf29663.176ENSMICG00000038169-9962.171Microcebus_murinus
ENSDARG00000043960rpf29770.000ENSMOCG00000005634Rpf29770.000Microtus_ochrogaster
ENSDARG00000043960rpf29668.475ENSMMOG00000014844rpf29768.475Mola_mola
ENSDARG00000043960rpf29670.270ENSMODG00000017919RPF29770.270Monodelphis_domestica
ENSDARG00000043960rpf29576.531ENSMALG00000019046rpf29576.531Monopterus_albus
ENSDARG00000043960rpf29970.066MGP_CAROLIEiJ_G0015254Rpf29975.758Mus_caroli
ENSDARG00000043960rpf29969.737ENSMUSG00000038510Rpf29973.737Mus_musculus
ENSDARG00000043960rpf29970.066MGP_PahariEiJ_G0030671Rpf29974.747Mus_pahari
ENSDARG00000043960rpf29970.395MGP_SPRETEiJ_G0016063Rpf29974.747Mus_spretus
ENSDARG00000043960rpf29970.395ENSMPUG00000010183RPF28769.935Mustela_putorius_furo
ENSDARG00000043960rpf28272.222ENSMLUG00000005676RPF29971.654Myotis_lucifugus
ENSDARG00000043960rpf29968.627ENSNGAG00000009701Rpf210068.627Nannospalax_galili
ENSDARG00000043960rpf29874.917ENSNBRG00000011087rpf29874.917Neolamprologus_brichardi
ENSDARG00000043960rpf27771.610ENSNLEG00000011848-9572.174Nomascus_leucogenys
ENSDARG00000043960rpf28967.766ENSNLEG00000033597-8967.766Nomascus_leucogenys
ENSDARG00000043960rpf29971.053ENSNLEG00000027819RPF210070.588Nomascus_leucogenys
ENSDARG00000043960rpf29055.755ENSMEUG00000006421RPF29455.755Notamacropus_eugenii
ENSDARG00000043960rpf28959.636ENSODEG00000002442-9459.636Octodon_degus
ENSDARG00000043960rpf29961.111ENSODEG00000006584-10061.111Octodon_degus
ENSDARG00000043960rpf28661.742ENSODEG00000006939-9661.742Octodon_degus
ENSDARG00000043960rpf28958.909ENSODEG00000003531-10058.909Octodon_degus
ENSDARG00000043960rpf29770.805ENSODEG00000013529-9770.805Octodon_degus
ENSDARG00000043960rpf29965.686ENSODEG00000019144-10065.686Octodon_degus
ENSDARG00000043960rpf29874.917ENSONIG00000011383rpf29874.917Oreochromis_niloticus
ENSDARG00000043960rpf29970.724ENSOCUG00000016028RPF210070.261Oryctolagus_cuniculus
ENSDARG00000043960rpf29874.587ENSORLG00000015183rpf29874.587Oryzias_latipes
ENSDARG00000043960rpf29874.257ENSORLG00020008756rpf29570.847Oryzias_latipes_hni
ENSDARG00000043960rpf29874.587ENSORLG00015003841RPF29874.587Oryzias_latipes_hsok
ENSDARG00000043960rpf210074.675ENSOMEG00000011508rpf210074.675Oryzias_melastigma
ENSDARG00000043960rpf29969.408ENSOGAG00000007438RPF29969.408Otolemur_garnettii
ENSDARG00000043960rpf29971.053ENSOARG00000009886-10070.588Ovis_aries
ENSDARG00000043960rpf29971.053ENSOARG00000015548-10070.588Ovis_aries
ENSDARG00000043960rpf29971.711ENSPPAG00000035622RPF210071.242Pan_paniscus
ENSDARG00000043960rpf28869.373ENSPPAG00000032089-9868.727Pan_paniscus
ENSDARG00000043960rpf29360.279ENSPPRG00000008363-9560.279Panthera_pardus
ENSDARG00000043960rpf29969.737ENSPPRG00000000320-10069.281Panthera_pardus
ENSDARG00000043960rpf29969.737ENSPTIG00000002060RPF210069.281Panthera_tigris_altaica
ENSDARG00000043960rpf29971.711ENSPTRG00000018503RPF210071.242Pan_troglodytes
ENSDARG00000043960rpf29971.711ENSPANG00000018834RPF210071.242Papio_anubis
ENSDARG00000043960rpf29973.529ENSPKIG00000019506rpf210073.529Paramormyrops_kingsleyae
ENSDARG00000043960rpf29871.523ENSPSIG00000014887RPF29871.523Pelodiscus_sinensis
ENSDARG00000043960rpf29265.018ENSPEMG00000011413Rpf210065.018Peromyscus_maniculatus_bairdii
ENSDARG00000043960rpf29570.408ENSPCIG00000028172RPF29669.565Phascolarctos_cinereus
ENSDARG00000043960rpf29977.303ENSPFOG00000003396rpf29977.303Poecilia_formosa
ENSDARG00000043960rpf29976.645ENSPLAG00000001226rpf29976.645Poecilia_latipinna
ENSDARG00000043960rpf29977.303ENSPMEG00000007781rpf29977.303Poecilia_mexicana
ENSDARG00000043960rpf29976.316ENSPREG00000020525rpf29976.316Poecilia_reticulata
ENSDARG00000043960rpf29972.039ENSPPYG00000016925RPF210071.569Pongo_abelii
ENSDARG00000043960rpf26372.821ENSPCAG00000002562RPF27674.332Procavia_capensis
ENSDARG00000043960rpf29757.047ENSPCOG00000012785RPF29757.047Propithecus_coquereli
ENSDARG00000043960rpf27776.050ENSPVAG00000003446RPF28272.619Pteropus_vampyrus
ENSDARG00000043960rpf29281.979ENSPNAG00000000082rpf29281.979Pygocentrus_nattereri
ENSDARG00000043960rpf29969.408ENSRNOG00000000587Rpf29969.408Rattus_norvegicus
ENSDARG00000043960rpf29472.759ENSRBIG00000038389RPF210069.608Rhinopithecus_bieti
ENSDARG00000043960rpf28566.165ENSRROG00000039510-9866.165Rhinopithecus_roxellana
ENSDARG00000043960rpf28169.880ENSRROG00000036685-9270.539Rhinopithecus_roxellana
ENSDARG00000043960rpf29771.906ENSRROG00000036457RPF29871.906Rhinopithecus_roxellana
ENSDARG00000043960rpf29159.516ENSRROG00000028992-9659.516Rhinopithecus_roxellana
ENSDARG00000043960rpf29343.624YKR081C-8643.624Saccharomyces_cerevisiae
ENSDARG00000043960rpf28266.403ENSSBOG00000022486-8965.251Saimiri_boliviensis_boliviensis
ENSDARG00000043960rpf28154.839ENSSBOG00000030264-8456.223Saimiri_boliviensis_boliviensis
ENSDARG00000043960rpf29358.246ENSSBOG00000025434-9757.193Saimiri_boliviensis_boliviensis
ENSDARG00000043960rpf28952.747ENSSBOG00000034420-9848.675Saimiri_boliviensis_boliviensis
ENSDARG00000043960rpf28055.870ENSSBOG00000029182-9156.485Saimiri_boliviensis_boliviensis
ENSDARG00000043960rpf29968.421ENSSHAG00000002212RPF29868.421Sarcophilus_harrisii
ENSDARG00000043960rpf29476.207ENSSFOG00015020916rpf29576.207Scleropages_formosus
ENSDARG00000043960rpf29874.587ENSSMAG00000017499rpf29874.587Scophthalmus_maximus
ENSDARG00000043960rpf29871.429ENSSDUG00000010383rpf29671.429Seriola_dumerili
ENSDARG00000043960rpf210075.974ENSSLDG00000022111rpf210075.974Seriola_lalandi_dorsalis
ENSDARG00000043960rpf29950.658ENSSARG00000012063RPF210050.327Sorex_araneus
ENSDARG00000043960rpf29668.475ENSSPUG00000005108RPF29568.475Sphenodon_punctatus
ENSDARG00000043960rpf29876.898ENSSPAG00000008035rpf29876.898Stegastes_partitus
ENSDARG00000043960rpf29970.066ENSSSCG00000004394RPF29970.066Sus_scrofa
ENSDARG00000043960rpf29872.185ENSTGUG00000012034RPF29872.185Taeniopygia_guttata
ENSDARG00000043960rpf29873.179ENSTRUG00000018264rpf29873.179Takifugu_rubripes
ENSDARG00000043960rpf29271.631ENSTNIG00000002749rpf29171.631Tetraodon_nigroviridis
ENSDARG00000043960rpf28267.857ENSTBEG00000017151RPF28267.857Tupaia_belangeri
ENSDARG00000043960rpf29971.242ENSTTRG00000012357RPF210071.242Tursiops_truncatus
ENSDARG00000043960rpf29970.724ENSUAMG00000013497RPF210070.261Ursus_americanus
ENSDARG00000043960rpf29970.395ENSUMAG00000025488RPF210069.935Ursus_maritimus
ENSDARG00000043960rpf29572.449ENSVPAG00000009562RPF29573.448Vicugna_pacos
ENSDARG00000043960rpf29161.429ENSVVUG00000021231-9960.993Vulpes_vulpes
ENSDARG00000043960rpf29963.158ENSVVUG00000006593-9963.158Vulpes_vulpes
ENSDARG00000043960rpf29771.475ENSXETG00000021335rpf29971.475Xenopus_tropicalis
ENSDARG00000043960rpf29973.684ENSXCOG00000001590rpf29973.684Xiphophorus_couchianus
ENSDARG00000043960rpf29969.737ENSXMAG00000021706rpf29969.737Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000027ribosomal large subunit assembly21873635.IBAProcess
GO:0000027ribosomal large subunit assembly-IEAProcess
GO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0000470maturation of LSU-rRNA-IEAProcess
GO:0005730nucleolus21873635.IBAComponent
GO:0019843rRNA binding-IEAFunction

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us