EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000043970 (Gene tree)
Gene ID: 557195
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine-rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 123429 bases
Position: chr13:10799380-10922808
Accession: ZDB-GENE-030131-7887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000111776	PPR	PF01535.20	9.1e-35	1	5
ENSDARP00000111776	PPR	PF01535.20	9.1e-35	2	5
ENSDARP00000111776	PPR	PF01535.20	9.1e-35	3	5
ENSDARP00000111776	PPR	PF01535.20	9.1e-35	4	5
ENSDARP00000111776	PPR	PF01535.20	9.1e-35	5	5

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000126427	-	4829	-	ENSDARP00000111776	1461 (aa)	-	F5H8N4

Gene Model

Click here to download ENSDARG00000043970's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000043970's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000043970	lrpprc	98	58.587	ENSAPOG00000016610	lrpprc	99	58.587	Acanthochromis_polyacanthus
ENSDARG00000043970	lrpprc	94	49.892	ENSAMEG00000005852	LRPPRC	99	49.892	Ailuropoda_melanoleuca
ENSDARG00000043970	lrpprc	99	56.172	ENSACIG00000009604	lrpprc	99	56.172	Amphilophus_citrinellus
ENSDARG00000043970	lrpprc	98	58.044	ENSAOCG00000005886	lrpprc	99	58.044	Amphiprion_ocellaris
ENSDARG00000043970	lrpprc	99	55.272	ENSAPEG00000002937	lrpprc	99	55.272	Amphiprion_percula
ENSDARG00000043970	lrpprc	90	58.494	ENSATEG00000010555	lrpprc	97	58.494	Anabas_testudineus
ENSDARG00000043970	lrpprc	93	53.705	ENSACAG00000029278	LRPPRC	99	52.150	Anolis_carolinensis
ENSDARG00000043970	lrpprc	98	48.819	ENSANAG00000027440	LRPPRC	99	52.708	Aotus_nancymaae
ENSDARG00000043970	lrpprc	95	55.874	ENSACLG00000023712	lrpprc	91	65.199	Astatotilapia_calliptera
ENSDARG00000043970	lrpprc	96	49.364	ENSCJAG00000000794	LRPPRC	97	54.319	Callithrix_jacchus
ENSDARG00000043970	lrpprc	96	49.325	ENSCHIG00000020173	LRPPRC	99	49.128	Capra_hircus
ENSDARG00000043970	lrpprc	93	38.966	ENSCAPG00000013631	LRPPRC	99	38.966	Cavia_aperea
ENSDARG00000043970	lrpprc	84	48.450	ENSCPOG00000000204	LRPPRC	99	48.450	Cavia_porcellus
ENSDARG00000043970	lrpprc	98	49.201	ENSCCAG00000031900	LRPPRC	99	52.888	Cebus_capucinus
ENSDARG00000043970	lrpprc	98	49.235	ENSCATG00000014187	LRPPRC	99	52.347	Cercocebus_atys
ENSDARG00000043970	lrpprc	98	47.666	ENSCLAG00000005203	LRPPRC	99	47.666	Chinchilla_lanigera
ENSDARG00000043970	lrpprc	94	49.892	ENSCSAG00000013233	LRPPRC	100	48.924	Chlorocebus_sabaeus
ENSDARG00000043970	lrpprc	82	48.628	ENSCHOG00000003631	LRPPRC	84	48.408	Choloepus_hoffmanni
ENSDARG00000043970	lrpprc	93	48.863	ENSCANG00000034961	LRPPRC	99	54.630	Colobus_angolensis_palliatus
ENSDARG00000043970	lrpprc	98	48.951	ENSCGRG00001016261	Lrpprc	99	49.024	Cricetulus_griseus_chok1gshd
ENSDARG00000043970	lrpprc	98	48.951	ENSCGRG00000004072	Lrpprc	99	49.024	Cricetulus_griseus_crigri
ENSDARG00000043970	lrpprc	98	46.625	ENSCSEG00000003850	lrpprc	96	51.445	Cynoglossus_semilaevis
ENSDARG00000043970	lrpprc	98	59.637	ENSCVAG00000012967	lrpprc	99	59.637	Cyprinodon_variegatus
ENSDARG00000043970	lrpprc	98	49.581	ENSDNOG00000012594	-	99	49.511	Dasypus_novemcinctus
ENSDARG00000043970	lrpprc	76	40.450	ENSDNOG00000032336	-	95	40.450	Dasypus_novemcinctus
ENSDARG00000043970	lrpprc	93	50.111	ENSDORG00000012233	Lrpprc	96	50.111	Dipodomys_ordii
ENSDARG00000043970	lrpprc	98	49.653	ENSETEG00000006657	LRPPRC	99	49.931	Echinops_telfairi
ENSDARG00000043970	lrpprc	85	41.490	ENSEEUG00000012340	LRPPRC	93	41.490	Erinaceus_europaeus
ENSDARG00000043970	lrpprc	93	55.474	ENSELUG00000012803	lrpprc	99	55.474	Esox_lucius
ENSDARG00000043970	lrpprc	98	49.581	ENSFCAG00000013468	LRPPRC	99	49.651	Felis_catus
ENSDARG00000043970	lrpprc	93	48.132	ENSFALG00000012738	LRPPRC	99	48.132	Ficedula_albicollis
ENSDARG00000043970	lrpprc	98	47.306	ENSFDAG00000015328	LRPPRC	99	47.306	Fukomys_damarensis
ENSDARG00000043970	lrpprc	98	57.778	ENSFHEG00000019604	lrpprc	99	57.778	Fundulus_heteroclitus
ENSDARG00000043970	lrpprc	98	53.412	ENSGMOG00000008337	lrpprc	99	53.412	Gadus_morhua
ENSDARG00000043970	lrpprc	98	58.130	ENSGAFG00000001455	lrpprc	99	58.130	Gambusia_affinis
ENSDARG00000043970	lrpprc	98	56.597	ENSGACG00000010679	lrpprc	99	58.613	Gasterosteus_aculeatus
ENSDARG00000043970	lrpprc	98	59.653	ENSHBUG00000000393	lrpprc	98	59.653	Haplochromis_burtoni
ENSDARG00000043970	lrpprc	98	47.350	ENSHGLG00000006123	LRPPRC	99	47.350	Heterocephalus_glaber_female
ENSDARG00000043970	lrpprc	58	45.882	ENSHGLG00100005960	-	99	45.882	Heterocephalus_glaber_male
ENSDARG00000043970	lrpprc	96	57.143	ENSHCOG00000002107	lrpprc	100	57.143	Hippocampus_comes
ENSDARG00000043970	lrpprc	98	60.248	ENSIPUG00000009406	lrpprc	99	60.248	Ictalurus_punctatus
ENSDARG00000043970	lrpprc	98	49.126	ENSSTOG00000011185	LRPPRC	99	49.196	Ictidomys_tridecemlineatus
ENSDARG00000043970	lrpprc	96	48.722	ENSJJAG00000020475	Lrpprc	100	48.396	Jaculus_jaculus
ENSDARG00000043970	lrpprc	97	53.136	ENSKMAG00000003287	lrpprc	85	53.136	Kryptolebias_marmoratus
ENSDARG00000043970	lrpprc	98	53.361	ENSLBEG00000023225	lrpprc	96	60.845	Labrus_bergylta
ENSDARG00000043970	lrpprc	98	55.187	ENSLACG00000014030	LRPPRC	99	55.187	Latimeria_chalumnae
ENSDARG00000043970	lrpprc	98	58.414	ENSLOCG00000016390	lrpprc	98	58.414	Lepisosteus_oculatus
ENSDARG00000043970	lrpprc	98	47.423	ENSLAFG00000008614	LRPPRC	99	47.658	Loxodonta_africana
ENSDARG00000043970	lrpprc	94	50.324	ENSMFAG00000041560	LRPPRC	99	54.633	Macaca_fascicularis
ENSDARG00000043970	lrpprc	94	49.604	ENSMMUG00000019841	LRPPRC	99	54.633	Macaca_mulatta
ENSDARG00000043970	lrpprc	98	49.305	ENSMNEG00000031613	LRPPRC	99	52.347	Macaca_nemestrina
ENSDARG00000043970	lrpprc	97	54.003	ENSMAMG00000021835	lrpprc	98	54.146	Mastacembelus_armatus
ENSDARG00000043970	lrpprc	98	59.653	ENSMZEG00005027379	lrpprc	99	59.653	Maylandia_zebra
ENSDARG00000043970	lrpprc	98	48.042	ENSMAUG00000012118	Lrpprc	99	48.456	Mesocricetus_auratus
ENSDARG00000043970	lrpprc	98	49.059	ENSMICG00000010486	LRPPRC	99	53.005	Microcebus_murinus
ENSDARG00000043970	lrpprc	98	49.163	ENSMOCG00000006048	Lrpprc	99	49.163	Microtus_ochrogaster
ENSDARG00000043970	lrpprc	98	56.193	ENSMMOG00000007830	lrpprc	94	63.900	Mola_mola
ENSDARG00000043970	lrpprc	93	50.954	ENSMODG00000000648	LRPPRC	99	50.954	Monodelphis_domestica
ENSDARG00000043970	lrpprc	98	56.895	ENSMALG00000001271	lrpprc	99	57.074	Monopterus_albus
ENSDARG00000043970	lrpprc	97	50.651	ENSMPUG00000011800	LRPPRC	99	50.651	Mustela_putorius_furo
ENSDARG00000043970	lrpprc	98	50.105	ENSMLUG00000010575	LRPPRC	99	50.070	Myotis_lucifugus
ENSDARG00000043970	lrpprc	98	49.093	ENSNGAG00000013069	Lrpprc	99	49.233	Nannospalax_galili
ENSDARG00000043970	lrpprc	92	55.060	ENSNBRG00000013202	lrpprc	92	63.750	Neolamprologus_brichardi
ENSDARG00000043970	lrpprc	98	48.581	ENSNLEG00000016782	LRPPRC	99	52.509	Nomascus_leucogenys
ENSDARG00000043970	lrpprc	86	50.820	ENSOPRG00000016774	LRPPRC	92	44.741	Ochotona_princeps
ENSDARG00000043970	lrpprc	98	48.288	ENSODEG00000011211	LRPPRC	99	48.673	Octodon_degus
ENSDARG00000043970	lrpprc	98	59.444	ENSONIG00000000917	lrpprc	100	58.926	Oreochromis_niloticus
ENSDARG00000043970	lrpprc	72	47.698	ENSOANG00000014670	-	100	47.698	Ornithorhynchus_anatinus
ENSDARG00000043970	lrpprc	99	48.966	ENSOCUG00000015046	LRPPRC	97	48.966	Oryctolagus_cuniculus
ENSDARG00000043970	lrpprc	98	55.833	ENSORLG00000004605	lrpprc	99	53.091	Oryzias_latipes
ENSDARG00000043970	lrpprc	89	57.360	ENSORLG00020012536	lrpprc	99	56.748	Oryzias_latipes_hni
ENSDARG00000043970	lrpprc	98	55.052	ENSORLG00015018270	lrpprc	99	55.052	Oryzias_latipes_hsok
ENSDARG00000043970	lrpprc	98	49.200	ENSOGAG00000012798	LRPPRC	100	49.408	Otolemur_garnettii
ENSDARG00000043970	lrpprc	93	50.147	ENSOARG00000006522	LRPPRC	99	49.057	Ovis_aries
ENSDARG00000043970	lrpprc	98	47.793	ENSPPAG00000040876	LRPPRC	99	51.537	Pan_paniscus
ENSDARG00000043970	lrpprc	98	49.372	ENSPPRG00000006578	LRPPRC	99	49.406	Panthera_pardus
ENSDARG00000043970	lrpprc	93	50.736	ENSPTIG00000000933	LRPPRC	96	50.736	Panthera_tigris_altaica
ENSDARG00000043970	lrpprc	98	49.062	ENSPTRG00000011880	LRPPRC	99	51.712	Pan_troglodytes
ENSDARG00000043970	lrpprc	99	48.332	ENSPANG00000020731	LRPPRC	99	51.986	Papio_anubis
ENSDARG00000043970	lrpprc	93	50.204	ENSPKIG00000022232	lrpprc	97	54.335	Paramormyrops_kingsleyae
ENSDARG00000043970	lrpprc	60	51.139	ENSPSIG00000006830	-	99	51.139	Pelodiscus_sinensis
ENSDARG00000043970	lrpprc	66	52.539	ENSPMGG00000016597	lrpprc	98	52.539	Periophthalmus_magnuspinnatus
ENSDARG00000043970	lrpprc	91	44.944	ENSPMAG00000002147	lrpprc	99	44.944	Petromyzon_marinus
ENSDARG00000043970	lrpprc	98	57.792	ENSPFOG00000011227	lrpprc	99	57.792	Poecilia_formosa
ENSDARG00000043970	lrpprc	98	57.582	ENSPLAG00000004018	lrpprc	99	57.582	Poecilia_latipinna
ENSDARG00000043970	lrpprc	98	57.722	ENSPMEG00000016425	lrpprc	99	57.722	Poecilia_mexicana
ENSDARG00000043970	lrpprc	98	57.153	ENSPREG00000003662	lrpprc	99	57.153	Poecilia_reticulata
ENSDARG00000043970	lrpprc	56	46.416	ENSPPYG00000029532	-	100	46.416	Pongo_abelii
ENSDARG00000043970	lrpprc	80	49.916	ENSPCAG00000001430	LRPPRC	84	50.503	Procavia_capensis
ENSDARG00000043970	lrpprc	98	46.895	ENSPVAG00000002007	LRPPRC	99	47.034	Pteropus_vampyrus
ENSDARG00000043970	lrpprc	98	54.054	ENSPNYG00000000756	lrpprc	90	64.151	Pundamilia_nyererei
ENSDARG00000043970	lrpprc	98	65.160	ENSPNAG00000002895	lrpprc	99	65.160	Pygocentrus_nattereri
ENSDARG00000043970	lrpprc	98	48.673	ENSRNOG00000005877	Lrpprc	99	49.199	Rattus_norvegicus
ENSDARG00000043970	lrpprc	98	48.028	ENSRBIG00000031552	LRPPRC	100	47.997	Rhinopithecus_bieti
ENSDARG00000043970	lrpprc	98	48.958	ENSSBOG00000011807	LRPPRC	99	53.430	Saimiri_boliviensis_boliviensis
ENSDARG00000043970	lrpprc	92	49.963	ENSSHAG00000018725	LRPPRC	99	49.963	Sarcophilus_harrisii
ENSDARG00000043970	lrpprc	98	54.483	ENSSFOG00015001042	lrpprc	99	54.483	Scleropages_formosus
ENSDARG00000043970	lrpprc	98	58.160	ENSSDUG00000019062	lrpprc	99	58.160	Seriola_dumerili
ENSDARG00000043970	lrpprc	98	48.017	ENSSLDG00000023028	lrpprc	99	48.304	Seriola_lalandi_dorsalis
ENSDARG00000043970	lrpprc	89	47.130	ENSSARG00000000426	LRPPRC	99	47.130	Sorex_araneus
ENSDARG00000043970	lrpprc	98	54.270	ENSSPAG00000000162	lrpprc	99	54.339	Stegastes_partitus
ENSDARG00000043970	lrpprc	98	48.713	ENSSSCG00000008452	LRPPRC	99	48.713	Sus_scrofa
ENSDARG00000043970	lrpprc	91	47.979	ENSTGUG00000003759	LRPPRC	100	47.979	Taeniopygia_guttata
ENSDARG00000043970	lrpprc	99	56.548	ENSTRUG00000008409	lrpprc	97	56.548	Takifugu_rubripes
ENSDARG00000043970	lrpprc	98	55.897	ENSTNIG00000007470	lrpprc	99	56.860	Tetraodon_nigroviridis
ENSDARG00000043970	lrpprc	98	47.699	ENSTTRG00000006403	LRPPRC	99	47.802	Tursiops_truncatus
ENSDARG00000043970	lrpprc	93	47.531	ENSVPAG00000008993	LRPPRC	99	47.531	Vicugna_pacos
ENSDARG00000043970	lrpprc	94	53.410	ENSXETG00000009296	lrpprc	99	53.553	Xenopus_tropicalis
ENSDARG00000043970	lrpprc	99	53.274	ENSXCOG00000013343	lrpprc	99	53.274	Xiphophorus_couchianus
ENSDARG00000043970	lrpprc	98	58.042	ENSXMAG00000018108	lrpprc	99	58.042	Xiphophorus_maculatus