EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000044182 (Gene tree)
Gene ID: 334440
Gene Symbol: stau1
Alias: fi67e05|wu:fi67e05|zgc:77271
Full Name: staufen double-stranded RNA binding protein 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 22976 bases
Position: chr6:46431848-46454823
Accession: ZDB-GENE-030131-6372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000064864	dsrm	PF00035.26	1e-44	1	3
ENSDARP00000064864	dsrm	PF00035.26	1e-44	2	3
ENSDARP00000064864	dsrm	PF00035.26	1e-44	3	3
ENSDARP00000116967	dsrm	PF00035.26	1.1e-44	1	3
ENSDARP00000116967	dsrm	PF00035.26	1.1e-44	2	3
ENSDARP00000116967	dsrm	PF00035.26	1.1e-44	3	3
ENSDARP00000148866	dsrm	PF00035.26	1.8e-44	1	3
ENSDARP00000148866	dsrm	PF00035.26	1.8e-44	2	3
ENSDARP00000148866	dsrm	PF00035.26	1.8e-44	3	3
ENSDARP00000113751	dsrm	PF00035.26	2.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000133992	-	3066	XM_005168761	ENSDARP00000116967	690 (aa)	XP_005168818	F1Q5V4
ENSDART00000064865	-	3092	-	ENSDARP00000064864	636 (aa)	-	F1QTC1
ENSDART00000144569	-	840	-	ENSDARP00000113751	171 (aa)	-	E9QIB8
ENSDART00000181056	-	3131	XM_005168759	ENSDARP00000148866	702 (aa)	XP_005168816	A0A2R8Q731

Gene Model

Click here to download ENSDARG00000044182's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000044182's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000044182	stau1	99	47.396	ENSDARG00000026801	stau2	96	44.666

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000044182	stau1	96	73.786	ENSG00000124214	STAU1	99	73.930	Homo_sapiens
ENSDARG00000044182	stau1	100	80.534	ENSAPOG00000017260	stau1	100	80.375	Acanthochromis_polyacanthus
ENSDARG00000044182	stau1	100	70.266	ENSAMEG00000013681	STAU1	99	68.040	Ailuropoda_melanoleuca
ENSDARG00000044182	stau1	100	78.493	ENSACIG00000015918	stau1	100	79.480	Amphilophus_citrinellus
ENSDARG00000044182	stau1	100	81.633	ENSAOCG00000012224	stau1	100	81.530	Amphiprion_ocellaris
ENSDARG00000044182	stau1	100	81.790	ENSAPEG00000012308	stau1	100	81.674	Amphiprion_percula
ENSDARG00000044182	stau1	100	81.790	ENSATEG00000024600	stau1	100	81.465	Anabas_testudineus
ENSDARG00000044182	stau1	100	73.636	ENSAPLG00000010527	STAU1	100	71.706	Anas_platyrhynchos
ENSDARG00000044182	stau1	100	74.845	ENSACAG00000015909	STAU1	99	73.050	Anolis_carolinensis
ENSDARG00000044182	stau1	96	72.553	ENSANAG00000032714	STAU1	99	72.692	Aotus_nancymaae
ENSDARG00000044182	stau1	100	80.534	ENSACLG00000012270	stau1	100	79.627	Astatotilapia_calliptera
ENSDARG00000044182	stau1	96	82.463	ENSAMXG00000016812	stau1	98	82.463	Astyanax_mexicanus
ENSDARG00000044182	stau1	96	73.152	ENSBTAG00000000241	STAU1	99	73.152	Bos_taurus
ENSDARG00000044182	stau1	96	73.541	ENSCJAG00000016233	STAU1	99	73.541	Callithrix_jacchus
ENSDARG00000044182	stau1	96	73.152	ENSCAFG00000011347	STAU1	97	73.152	Canis_familiaris
ENSDARG00000044182	stau1	96	71.383	ENSCAFG00020017123	STAU1	99	71.987	Canis_lupus_dingo
ENSDARG00000044182	stau1	96	72.374	ENSCHIG00000001799	-	99	72.374	Capra_hircus
ENSDARG00000044182	stau1	96	72.957	ENSTSYG00000036179	-	88	72.957	Carlito_syrichta
ENSDARG00000044182	stau1	79	71.713	ENSCAPG00000017041	STAU1	99	71.514	Cavia_aperea
ENSDARG00000044182	stau1	78	69.661	ENSCPOG00000005566	STAU1	99	69.661	Cavia_porcellus
ENSDARG00000044182	stau1	96	72.361	ENSCCAG00000034339	STAU1	99	72.500	Cebus_capucinus
ENSDARG00000044182	stau1	96	75.214	ENSCATG00000028474	STAU1	99	75.214	Cercocebus_atys
ENSDARG00000044182	stau1	78	72.854	ENSCLAG00000006516	-	99	72.854	Chinchilla_lanigera
ENSDARG00000044182	stau1	78	60.321	ENSCLAG00000002784	-	99	60.321	Chinchilla_lanigera
ENSDARG00000044182	stau1	79	73.705	ENSCSAG00000014986	STAU1	99	73.705	Chlorocebus_sabaeus
ENSDARG00000044182	stau1	96	73.450	ENSCHOG00000001511	STAU1	99	73.010	Choloepus_hoffmanni
ENSDARG00000044182	stau1	100	75.155	ENSCPBG00000026741	STAU1	100	72.843	Chrysemys_picta_bellii
ENSDARG00000044182	stau1	96	73.930	ENSCANG00000039220	STAU1	99	73.930	Colobus_angolensis_palliatus
ENSDARG00000044182	stau1	78	69.261	ENSCGRG00001013453	Stau1	99	69.261	Cricetulus_griseus_chok1gshd
ENSDARG00000044182	stau1	78	69.261	ENSCGRG00000007216	Stau1	99	69.261	Cricetulus_griseus_crigri
ENSDARG00000044182	stau1	99	71.561	ENSCSEG00000000792	stau1	99	71.549	Cynoglossus_semilaevis
ENSDARG00000044182	stau1	94	75.586	ENSCVAG00000005906	stau1	100	76.953	Cyprinodon_variegatus
ENSDARG00000044182	stau1	96	73.643	ENSDNOG00000014933	STAU1	97	73.204	Dasypus_novemcinctus
ENSDARG00000044182	stau1	78	72.121	ENSDORG00000030220	Stau1	99	72.121	Dipodomys_ordii
ENSDARG00000044182	stau1	69	76.645	ENSETEG00000018235	STAU1	82	76.645	Echinops_telfairi
ENSDARG00000044182	stau1	96	72.745	ENSEASG00005023343	STAU1	99	72.885	Equus_asinus_asinus
ENSDARG00000044182	stau1	96	73.541	ENSECAG00000012894	STAU1	99	73.541	Equus_caballus
ENSDARG00000044182	stau1	71	78.030	ENSEEUG00000014344	STAU1	68	78.030	Erinaceus_europaeus
ENSDARG00000044182	stau1	100	80.710	ENSELUG00000002529	stau1	99	82.215	Esox_lucius
ENSDARG00000044182	stau1	96	73.346	ENSFCAG00000001447	STAU1	99	73.346	Felis_catus
ENSDARG00000044182	stau1	100	75.078	ENSFALG00000012940	STAU1	100	72.961	Ficedula_albicollis
ENSDARG00000044182	stau1	78	72.255	ENSFDAG00000014119	-	99	72.255	Fukomys_damarensis
ENSDARG00000044182	stau1	78	57.285	ENSFDAG00000020837	-	99	56.088	Fukomys_damarensis
ENSDARG00000044182	stau1	100	79.906	ENSFHEG00000013517	stau1	100	79.029	Fundulus_heteroclitus
ENSDARG00000044182	stau1	100	72.067	ENSGMOG00000016850	stau1	100	69.748	Gadus_morhua
ENSDARG00000044182	stau1	100	76.019	ENSGALG00000004736	STAU1	100	73.820	Gallus_gallus
ENSDARG00000044182	stau1	100	79.121	ENSGAFG00000010437	stau1	100	78.049	Gambusia_affinis
ENSDARG00000044182	stau1	100	80.251	ENSGACG00000001352	stau1	100	79.683	Gasterosteus_aculeatus
ENSDARG00000044182	stau1	100	76.176	ENSGAGG00000009825	STAU1	100	73.752	Gopherus_agassizii
ENSDARG00000044182	stau1	96	69.202	ENSGGOG00000025351	STAU1	99	78.415	Gorilla_gorilla
ENSDARG00000044182	stau1	100	80.691	ENSHBUG00000023668	stau1	100	79.770	Haplochromis_burtoni
ENSDARG00000044182	stau1	78	73.535	ENSHGLG00000008730	STAU1	99	73.535	Heterocephalus_glaber_female
ENSDARG00000044182	stau1	78	73.535	ENSHGLG00100000098	STAU1	99	73.535	Heterocephalus_glaber_male
ENSDARG00000044182	stau1	100	77.201	ENSHCOG00000018461	stau1	100	76.040	Hippocampus_comes
ENSDARG00000044182	stau1	100	81.871	ENSIPUG00000023725	stau1	99	82.413	Ictalurus_punctatus
ENSDARG00000044182	stau1	78	73.333	ENSSTOG00000003634	STAU1	99	73.333	Ictidomys_tridecemlineatus
ENSDARG00000044182	stau1	78	71.717	ENSJJAG00000020032	Stau1	99	71.717	Jaculus_jaculus
ENSDARG00000044182	stau1	100	78.022	ENSKMAG00000007135	stau1	99	78.098	Kryptolebias_marmoratus
ENSDARG00000044182	stau1	100	78.807	ENSLBEG00000020172	stau1	100	78.499	Labrus_bergylta
ENSDARG00000044182	stau1	98	75.274	ENSLACG00000016157	STAU1	99	71.016	Latimeria_chalumnae
ENSDARG00000044182	stau1	100	79.560	ENSLOCG00000003134	stau1	100	78.879	Lepisosteus_oculatus
ENSDARG00000044182	stau1	81	73.346	ENSLAFG00000003238	STAU1	99	73.346	Loxodonta_africana
ENSDARG00000044182	stau1	96	75.214	ENSMFAG00000040931	STAU1	99	78.676	Macaca_fascicularis
ENSDARG00000044182	stau1	96	69.011	ENSMMUG00000002302	STAU1	99	78.676	Macaca_mulatta
ENSDARG00000044182	stau1	96	74.262	ENSMNEG00000033821	STAU1	99	74.262	Macaca_nemestrina
ENSDARG00000044182	stau1	96	73.930	ENSMLEG00000031383	STAU1	99	73.930	Mandrillus_leucophaeus
ENSDARG00000044182	stau1	100	81.319	ENSMAMG00000017586	stau1	100	81.955	Mastacembelus_armatus
ENSDARG00000044182	stau1	100	80.691	ENSMZEG00005015605	stau1	100	79.885	Maylandia_zebra
ENSDARG00000044182	stau1	100	73.485	ENSMGAG00000004719	STAU1	100	71.567	Meleagris_gallopavo
ENSDARG00000044182	stau1	78	69.062	ENSMAUG00000013846	Stau1	99	69.062	Mesocricetus_auratus
ENSDARG00000044182	stau1	96	70.825	ENSMICG00000001995	STAU1	99	70.962	Microcebus_murinus
ENSDARG00000044182	stau1	78	70.060	ENSMOCG00000018743	Stau1	99	70.060	Microtus_ochrogaster
ENSDARG00000044182	stau1	100	76.923	ENSMMOG00000015455	stau1	99	78.471	Mola_mola
ENSDARG00000044182	stau1	96	74.878	ENSMODG00000016276	STAU1	99	73.037	Monodelphis_domestica
ENSDARG00000044182	stau1	99	80.818	ENSMALG00000000045	stau1	99	80.636	Monopterus_albus
ENSDARG00000044182	stau1	78	70.101	MGP_CAROLIEiJ_G0024699	Stau1	100	70.325	Mus_caroli
ENSDARG00000044182	stau1	78	70.101	ENSMUSG00000039536	Stau1	100	70.325	Mus_musculus
ENSDARG00000044182	stau1	78	69.697	MGP_PahariEiJ_G0026141	Stau1	99	69.697	Mus_pahari
ENSDARG00000044182	stau1	78	70.101	MGP_SPRETEiJ_G0025619	Stau1	100	70.325	Mus_spretus
ENSDARG00000044182	stau1	95	72.414	ENSMPUG00000017581	STAU1	99	69.733	Mustela_putorius_furo
ENSDARG00000044182	stau1	96	72.233	ENSMLUG00000008407	STAU1	97	72.233	Myotis_lucifugus
ENSDARG00000044182	stau1	78	71.058	ENSNGAG00000007108	Stau1	99	71.058	Nannospalax_galili
ENSDARG00000044182	stau1	100	80.691	ENSNBRG00000017596	stau1	100	79.770	Neolamprologus_brichardi
ENSDARG00000044182	stau1	96	73.541	ENSNLEG00000006955	STAU1	99	73.541	Nomascus_leucogenys
ENSDARG00000044182	stau1	73	78.017	ENSMEUG00000003263	STAU1	80	78.017	Notamacropus_eugenii
ENSDARG00000044182	stau1	80	71.595	ENSOPRG00000014569	STAU1	89	71.595	Ochotona_princeps
ENSDARG00000044182	stau1	79	72.709	ENSODEG00000006523	STAU1	99	72.709	Octodon_degus
ENSDARG00000044182	stau1	100	78.321	ENSONIG00000004152	stau1	99	77.545	Oreochromis_niloticus
ENSDARG00000044182	stau1	100	73.292	ENSOANG00000006394	STAU1	100	70.945	Ornithorhynchus_anatinus
ENSDARG00000044182	stau1	93	72.568	ENSOCUG00000006214	STAU1	95	72.568	Oryctolagus_cuniculus
ENSDARG00000044182	stau1	100	78.386	ENSOMEG00000002388	stau1	100	78.386	Oryzias_melastigma
ENSDARG00000044182	stau1	96	72.957	ENSOGAG00000002127	STAU1	97	72.957	Otolemur_garnettii
ENSDARG00000044182	stau1	78	52.191	ENSOGAG00000028222	-	99	51.497	Otolemur_garnettii
ENSDARG00000044182	stau1	96	72.374	ENSOARG00000012204	STAU1	97	72.374	Ovis_aries
ENSDARG00000044182	stau1	96	69.202	ENSPPAG00000032023	STAU1	99	78.415	Pan_paniscus
ENSDARG00000044182	stau1	96	73.346	ENSPPRG00000003436	STAU1	99	73.346	Panthera_pardus
ENSDARG00000044182	stau1	96	73.346	ENSPTIG00000011768	STAU1	99	73.346	Panthera_tigris_altaica
ENSDARG00000044182	stau1	96	69.202	ENSPTRG00000023130	STAU1	99	78.415	Pan_troglodytes
ENSDARG00000044182	stau1	96	75.214	ENSPANG00000020560	STAU1	99	75.214	Papio_anubis
ENSDARG00000044182	stau1	99	79.656	ENSPKIG00000024588	stau1	99	79.714	Paramormyrops_kingsleyae
ENSDARG00000044182	stau1	100	76.332	ENSPSIG00000010731	STAU1	99	74.037	Pelodiscus_sinensis
ENSDARG00000044182	stau1	100	78.091	ENSPMGG00000018553	stau1	100	76.824	Periophthalmus_magnuspinnatus
ENSDARG00000044182	stau1	78	69.860	ENSPEMG00000022045	Stau1	99	69.860	Peromyscus_maniculatus_bairdii
ENSDARG00000044182	stau1	98	72.699	ENSPCIG00000023269	STAU1	99	72.945	Phascolarctos_cinereus
ENSDARG00000044182	stau1	100	79.154	ENSPFOG00000017253	stau1	100	78.223	Poecilia_formosa
ENSDARG00000044182	stau1	61	83.486	ENSPLAG00000014829	stau1	96	75.389	Poecilia_latipinna
ENSDARG00000044182	stau1	100	75.706	ENSPMEG00000007495	stau1	100	74.928	Poecilia_mexicana
ENSDARG00000044182	stau1	100	78.527	ENSPREG00000003477	stau1	100	77.650	Poecilia_reticulata
ENSDARG00000044182	stau1	96	73.981	ENSPPYG00000011111	STAU1	99	74.125	Pongo_abelii
ENSDARG00000044182	stau1	76	66.805	ENSPCAG00000002459	STAU1	100	66.805	Procavia_capensis
ENSDARG00000044182	stau1	96	71.845	ENSPCOG00000027746	STAU1	99	71.984	Propithecus_coquereli
ENSDARG00000044182	stau1	68	78.618	ENSPVAG00000015019	STAU1	86	78.618	Pteropus_vampyrus
ENSDARG00000044182	stau1	100	80.691	ENSPNYG00000014436	stau1	100	79.770	Pundamilia_nyererei
ENSDARG00000044182	stau1	100	88.889	ENSPNAG00000011323	stau1	100	87.176	Pygocentrus_nattereri
ENSDARG00000044182	stau1	78	69.261	ENSRNOG00000007781	Stau1	99	69.261	Rattus_norvegicus
ENSDARG00000044182	stau1	79	72.835	ENSRBIG00000037345	STAU1	100	73.161	Rhinopithecus_bieti
ENSDARG00000044182	stau1	96	74.262	ENSRROG00000039008	STAU1	99	74.262	Rhinopithecus_roxellana
ENSDARG00000044182	stau1	96	72.361	ENSSBOG00000034448	STAU1	99	72.500	Saimiri_boliviensis_boliviensis
ENSDARG00000044182	stau1	96	75.728	ENSSHAG00000009492	STAU1	97	75.728	Sarcophilus_harrisii
ENSDARG00000044182	stau1	100	80.899	ENSSFOG00015021497	stau1	99	81.322	Scleropages_formosus
ENSDARG00000044182	stau1	100	80.636	ENSSMAG00000017410	stau1	100	80.636	Scophthalmus_maximus
ENSDARG00000044182	stau1	100	81.476	ENSSDUG00000019439	stau1	100	81.385	Seriola_dumerili
ENSDARG00000044182	stau1	100	81.476	ENSSLDG00000025040	stau1	100	81.385	Seriola_lalandi_dorsalis
ENSDARG00000044182	stau1	100	75.311	ENSSPUG00000017983	STAU1	99	73.304	Sphenodon_punctatus
ENSDARG00000044182	stau1	100	81.319	ENSSPAG00000019275	stau1	100	81.097	Stegastes_partitus
ENSDARG00000044182	stau1	96	73.346	ENSSSCG00000027444	STAU1	99	73.346	Sus_scrofa
ENSDARG00000044182	stau1	100	72.508	ENSTGUG00000008784	STAU1	100	70.678	Taeniopygia_guttata
ENSDARG00000044182	stau1	100	78.022	ENSTRUG00000005837	stau1	100	77.905	Takifugu_rubripes
ENSDARG00000044182	stau1	99	77.480	ENSTNIG00000014732	stau1	99	77.037	Tetraodon_nigroviridis
ENSDARG00000044182	stau1	96	61.748	ENSTBEG00000009404	STAU1	99	61.748	Tupaia_belangeri
ENSDARG00000044182	stau1	73	72.845	ENSTTRG00000004285	STAU1	80	72.845	Tursiops_truncatus
ENSDARG00000044182	stau1	79	72.016	ENSUAMG00000025449	STAU1	99	72.016	Ursus_americanus
ENSDARG00000044182	stau1	59	68.217	ENSUMAG00000024475	STAU1	89	68.217	Ursus_maritimus
ENSDARG00000044182	stau1	96	73.346	ENSVPAG00000001313	STAU1	99	73.346	Vicugna_pacos
ENSDARG00000044182	stau1	96	71.383	ENSVVUG00000022325	STAU1	99	68.996	Vulpes_vulpes
ENSDARG00000044182	stau1	100	72.457	ENSXETG00000001783	stau1	96	71.852	Xenopus_tropicalis
ENSDARG00000044182	stau1	56	82.000	ENSXCOG00000008804	stau1	94	76.408	Xiphophorus_couchianus
ENSDARG00000044182	stau1	100	78.964	ENSXMAG00000016175	stau1	100	77.905	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	16513105.	IPI	Function
GO:0007281	germ cell development	16513105.	IMP	Process