EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000044485 (Gene tree)
Gene ID: 572527
Gene Symbol: sall4
Alias: cb372|cb614|ik:tdsubc_2c1|sb:cb372|sb:cb614|wu:fa01g03|xx:tdsubc_2c1
Full Name: spalt-like transcription factor 4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 11897 bases
Position: chr23:38940700-38952596
Accession: ZDB-GENE-060328-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000065330	zf-C2H2	PF00096.26	4.2e-29	1	6
ENSDARP00000065330	zf-C2H2	PF00096.26	4.2e-29	2	6
ENSDARP00000065330	zf-C2H2	PF00096.26	4.2e-29	3	6
ENSDARP00000065330	zf-C2H2	PF00096.26	4.2e-29	4	6
ENSDARP00000065330	zf-C2H2	PF00096.26	4.2e-29	5	6
ENSDARP00000065330	zf-C2H2	PF00096.26	4.2e-29	6	6
ENSDARP00000065330	zf-met	PF12874.7	1.1e-14	1	3
ENSDARP00000065330	zf-met	PF12874.7	1.1e-14	2	3
ENSDARP00000065330	zf-met	PF12874.7	1.1e-14	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000065331	-	8687	-	ENSDARP00000065330	1091 (aa)	-	F1QDF2

Gene Model

Click here to download ENSDARG00000044485's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000044485's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000044485	sall4	93	57.692	ENSDARG00000074319	sall1a	98	57.692
ENSDARG00000044485	sall4	84	68.000	ENSDARG00000079613	sall3a	85	44.565
ENSDARG00000044485	sall4	69	63.462	ENSDARG00000057586	sall3b	98	34.643
ENSDARG00000044485	sall4	95	35.106	ENSDARG00000075891	sall1b	96	34.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000044485	sall4	99	44.974	ENSG00000101115	SALL4	99	53.333	Homo_sapiens
ENSDARG00000044485	sall4	99	64.137	ENSAPOG00000002465	sall4	99	64.137	Acanthochromis_polyacanthus
ENSDARG00000044485	sall4	99	46.194	ENSAMEG00000013250	-	99	47.953	Ailuropoda_melanoleuca
ENSDARG00000044485	sall4	99	62.715	ENSACIG00000017298	sall4	99	62.715	Amphilophus_citrinellus
ENSDARG00000044485	sall4	99	64.892	ENSAOCG00000023678	sall4	99	64.892	Amphiprion_ocellaris
ENSDARG00000044485	sall4	99	64.919	ENSAPEG00000000751	sall4	99	64.919	Amphiprion_percula
ENSDARG00000044485	sall4	99	65.099	ENSATEG00000024480	sall4	99	65.099	Anabas_testudineus
ENSDARG00000044485	sall4	99	53.163	ENSAPLG00000006498	SALL4	99	54.042	Anas_platyrhynchos
ENSDARG00000044485	sall4	99	51.127	ENSACAG00000012748	SALL4	99	51.213	Anolis_carolinensis
ENSDARG00000044485	sall4	99	45.407	ENSANAG00000023352	SALL4	99	45.462	Aotus_nancymaae
ENSDARG00000044485	sall4	99	62.953	ENSACLG00000017851	sall4	99	62.772	Astatotilapia_calliptera
ENSDARG00000044485	sall4	100	75.494	ENSAMXG00000001254	sall4	100	75.763	Astyanax_mexicanus
ENSDARG00000044485	sall4	99	43.223	ENSBTAG00000003101	SALL4	99	43.478	Bos_taurus
ENSDARG00000044485	sall4	80	47.561	ENSCJAG00000000591	SALL4	96	47.561	Callithrix_jacchus
ENSDARG00000044485	sall4	99	45.934	ENSCAFG00000011738	-	99	46.107	Canis_familiaris
ENSDARG00000044485	sall4	99	45.934	ENSCAFG00020021870	SALL4	99	46.107	Canis_lupus_dingo
ENSDARG00000044485	sall4	99	43.076	ENSCHIG00000026270	SALL4	99	43.585	Capra_hircus
ENSDARG00000044485	sall4	99	44.762	ENSTSYG00000007359	SALL4	99	52.500	Carlito_syrichta
ENSDARG00000044485	sall4	98	45.815	ENSCAPG00000012135	SALL4	96	45.594	Cavia_aperea
ENSDARG00000044485	sall4	99	41.885	ENSCCAG00000029512	-	99	60.784	Cebus_capucinus
ENSDARG00000044485	sall4	99	44.909	ENSCATG00000030757	SALL4	99	45.178	Cercocebus_atys
ENSDARG00000044485	sall4	99	44.857	ENSCLAG00000010479	SALL4	99	45.117	Chinchilla_lanigera
ENSDARG00000044485	sall4	99	44.909	ENSCSAG00000015269	SALL4	99	45.178	Chlorocebus_sabaeus
ENSDARG00000044485	sall4	99	54.273	ENSCPBG00000014995	SALL4	99	54.968	Chrysemys_picta_bellii
ENSDARG00000044485	sall4	99	44.503	ENSCANG00000036463	SALL4	99	44.686	Colobus_angolensis_palliatus
ENSDARG00000044485	sall4	99	43.164	ENSCGRG00001019569	Sall4	99	52.564	Cricetulus_griseus_chok1gshd
ENSDARG00000044485	sall4	99	43.078	ENSCGRG00000000462	Sall4	100	77.778	Cricetulus_griseus_crigri
ENSDARG00000044485	sall4	99	64.557	ENSCSEG00000014604	sall4	99	64.950	Cynoglossus_semilaevis
ENSDARG00000044485	sall4	99	63.949	ENSCVAG00000010815	sall4	99	64.098	Cyprinodon_variegatus
ENSDARG00000044485	sall4	99	45.830	ENSDNOG00000040633	SALL4	99	45.962	Dasypus_novemcinctus
ENSDARG00000044485	sall4	99	43.624	ENSDORG00000012841	Sall4	99	78.378	Dipodomys_ordii
ENSDARG00000044485	sall4	65	60.000	ENSETEG00000012475	-	55	60.000	Echinops_telfairi
ENSDARG00000044485	sall4	64	56.897	ENSEBUG00000015425	-	56	75.000	Eptatretus_burgeri
ENSDARG00000044485	sall4	99	45.470	ENSECAG00000018533	SALL4	99	45.557	Equus_caballus
ENSDARG00000044485	sall4	99	42.955	ENSEEUG00000003649	SALL4	99	42.906	Erinaceus_europaeus
ENSDARG00000044485	sall4	99	66.163	ENSELUG00000005696	sall4	99	66.144	Esox_lucius
ENSDARG00000044485	sall4	99	44.901	ENSFCAG00000002822	SALL4	85	67.308	Felis_catus
ENSDARG00000044485	sall4	99	52.109	ENSFALG00000013149	SALL4	99	52.373	Ficedula_albicollis
ENSDARG00000044485	sall4	99	44.492	ENSFDAG00000017812	SALL4	92	53.571	Fukomys_damarensis
ENSDARG00000044485	sall4	99	64.919	ENSFHEG00000014187	sall4	99	64.647	Fundulus_heteroclitus
ENSDARG00000044485	sall4	99	62.216	ENSGMOG00000003822	sall4	99	62.319	Gadus_morhua
ENSDARG00000044485	sall4	99	52.469	ENSGALG00000041365	SALL4	99	53.916	Gallus_gallus
ENSDARG00000044485	sall4	99	63.768	ENSGAFG00000019925	sall4	99	63.678	Gambusia_affinis
ENSDARG00000044485	sall4	99	61.261	ENSGACG00000011124	sall4	99	62.072	Gasterosteus_aculeatus
ENSDARG00000044485	sall4	99	53.718	ENSGAGG00000002297	SALL4	99	54.156	Gopherus_agassizii
ENSDARG00000044485	sall4	99	44.887	ENSGGOG00000001832	SALL4	99	45.242	Gorilla_gorilla
ENSDARG00000044485	sall4	99	62.953	ENSHBUG00000007327	sall4	99	62.772	Haplochromis_burtoni
ENSDARG00000044485	sall4	97	44.617	ENSHGLG00000009043	SALL4	95	44.516	Heterocephalus_glaber_female
ENSDARG00000044485	sall4	97	44.617	ENSHGLG00100002722	SALL4	95	44.424	Heterocephalus_glaber_male
ENSDARG00000044485	sall4	99	62.658	ENSHCOG00000008519	sall4	99	62.387	Hippocampus_comes
ENSDARG00000044485	sall4	100	75.453	ENSIPUG00000019170	sall4	100	75.453	Ictalurus_punctatus
ENSDARG00000044485	sall4	65	53.333	ENSSTOG00000025002	SALL4	100	83.099	Ictidomys_tridecemlineatus
ENSDARG00000044485	sall4	99	44.274	ENSJJAG00000020688	Sall4	99	84.507	Jaculus_jaculus
ENSDARG00000044485	sall4	99	64.796	ENSKMAG00000002501	sall4	99	64.796	Kryptolebias_marmoratus
ENSDARG00000044485	sall4	99	63.816	ENSLBEG00000019951	sall4	99	63.816	Labrus_bergylta
ENSDARG00000044485	sall4	96	48.037	ENSLACG00000013898	SALL4	99	62.105	Latimeria_chalumnae
ENSDARG00000044485	sall4	99	65.523	ENSLOCG00000002427	sall4	99	65.291	Lepisosteus_oculatus
ENSDARG00000044485	sall4	99	44.609	ENSLAFG00000004309	SALL4	99	44.599	Loxodonta_africana
ENSDARG00000044485	sall4	99	44.909	ENSMFAG00000027169	SALL4	99	45.178	Macaca_fascicularis
ENSDARG00000044485	sall4	87	46.962	ENSMMUG00000003870	SALL4	99	53.333	Macaca_mulatta
ENSDARG00000044485	sall4	87	46.962	ENSMNEG00000035995	SALL4	93	46.865	Macaca_nemestrina
ENSDARG00000044485	sall4	99	45.083	ENSMLEG00000030467	SALL4	99	45.265	Mandrillus_leucophaeus
ENSDARG00000044485	sall4	99	63.102	ENSMAMG00000005223	sall4	99	63.102	Mastacembelus_armatus
ENSDARG00000044485	sall4	99	62.862	ENSMZEG00005023418	sall4	99	62.681	Maylandia_zebra
ENSDARG00000044485	sall4	76	63.462	ENSMGAG00000009344	SALL4	100	63.462	Meleagris_gallopavo
ENSDARG00000044485	sall4	99	43.755	ENSMAUG00000015814	Sall4	100	74.699	Mesocricetus_auratus
ENSDARG00000044485	sall4	99	46.147	ENSMICG00000000027	SALL4	99	46.407	Microcebus_murinus
ENSDARG00000044485	sall4	99	43.568	ENSMOCG00000018245	Sall4	100	82.192	Microtus_ochrogaster
ENSDARG00000044485	sall4	99	64.738	ENSMMOG00000014929	sall4	99	64.738	Mola_mola
ENSDARG00000044485	sall4	99	48.660	ENSMODG00000016387	SALL4	97	48.789	Monodelphis_domestica
ENSDARG00000044485	sall4	99	65.673	ENSMALG00000018709	sall4	99	65.728	Monopterus_albus
ENSDARG00000044485	sall4	99	42.640	MGP_CAROLIEiJ_G0024723	Sall4	100	84.722	Mus_caroli
ENSDARG00000044485	sall4	99	42.331	ENSMUSG00000027547	Sall4	100	84.722	Mus_musculus
ENSDARG00000044485	sall4	99	42.468	MGP_PahariEiJ_G0026164	Sall4	100	84.722	Mus_pahari
ENSDARG00000044485	sall4	99	42.331	MGP_SPRETEiJ_G0025643	Sall4	100	84.722	Mus_spretus
ENSDARG00000044485	sall4	99	45.455	ENSMPUG00000017543	SALL4	96	45.548	Mustela_putorius_furo
ENSDARG00000044485	sall4	97	45.257	ENSMLUG00000007060	-	98	45.077	Myotis_lucifugus
ENSDARG00000044485	sall4	84	39.485	ENSMLUG00000028073	-	82	38.849	Myotis_lucifugus
ENSDARG00000044485	sall4	99	42.529	ENSMLUG00000008405	-	99	42.406	Myotis_lucifugus
ENSDARG00000044485	sall4	99	43.652	ENSNGAG00000017833	Sall4	99	43.690	Nannospalax_galili
ENSDARG00000044485	sall4	99	63.101	ENSNBRG00000001829	sall4	99	62.919	Neolamprologus_brichardi
ENSDARG00000044485	sall4	57	60.714	ENSNBRG00000017645	sall2	56	63.492	Neolamprologus_brichardi
ENSDARG00000044485	sall4	99	45.290	ENSNLEG00000007013	SALL4	99	45.643	Nomascus_leucogenys
ENSDARG00000044485	sall4	91	59.615	ENSMEUG00000005793	-	99	63.462	Notamacropus_eugenii
ENSDARG00000044485	sall4	99	45.423	ENSOPRG00000011640	SALL4	99	45.290	Ochotona_princeps
ENSDARG00000044485	sall4	99	63.291	ENSONIG00000016557	sall4	99	63.382	Oreochromis_niloticus
ENSDARG00000044485	sall4	99	52.572	ENSOANG00000008667	SALL4	97	52.977	Ornithorhynchus_anatinus
ENSDARG00000044485	sall4	97	46.422	ENSOCUG00000011797	SALL4	98	46.119	Oryctolagus_cuniculus
ENSDARG00000044485	sall4	99	62.703	ENSORLG00000016130	sall4	99	62.973	Oryzias_latipes
ENSDARG00000044485	sall4	99	63.267	ENSORLG00020007339	sall4	99	63.628	Oryzias_latipes_hni
ENSDARG00000044485	sall4	99	62.816	ENSORLG00015002265	sall4	99	63.177	Oryzias_latipes_hsok
ENSDARG00000044485	sall4	99	63.481	ENSOMEG00000017344	sall4	99	63.751	Oryzias_melastigma
ENSDARG00000044485	sall4	97	47.248	ENSOGAG00000013799	SALL4	99	47.064	Otolemur_garnettii
ENSDARG00000044485	sall4	99	42.907	ENSOARG00000014570	SALL4	99	42.734	Ovis_aries
ENSDARG00000044485	sall4	99	44.974	ENSPPAG00000038064	SALL4	99	45.234	Pan_paniscus
ENSDARG00000044485	sall4	99	45.034	ENSPPRG00000008677	SALL4	85	67.308	Panthera_pardus
ENSDARG00000044485	sall4	99	45.043	ENSPTRG00000013631	SALL4	99	45.399	Pan_troglodytes
ENSDARG00000044485	sall4	87	46.962	ENSPANG00000021792	SALL4	93	46.865	Papio_anubis
ENSDARG00000044485	sall4	99	65.701	ENSPKIG00000007074	sall4	99	65.701	Paramormyrops_kingsleyae
ENSDARG00000044485	sall4	99	52.632	ENSPSIG00000009066	SALL4	99	53.333	Pelodiscus_sinensis
ENSDARG00000044485	sall4	99	59.727	ENSPMGG00000022551	sall4	99	60.091	Periophthalmus_magnuspinnatus
ENSDARG00000044485	sall4	99	43.675	ENSPEMG00000022706	Sall4	100	84.722	Peromyscus_maniculatus_bairdii
ENSDARG00000044485	sall4	99	50.994	ENSPCIG00000022838	SALL4	97	50.908	Phascolarctos_cinereus
ENSDARG00000044485	sall4	99	63.587	ENSPFOG00000001442	sall4	99	63.496	Poecilia_formosa
ENSDARG00000044485	sall4	99	63.678	ENSPLAG00000008760	sall4	99	63.587	Poecilia_latipinna
ENSDARG00000044485	sall4	99	63.587	ENSPMEG00000008497	sall4	99	63.496	Poecilia_mexicana
ENSDARG00000044485	sall4	99	63.587	ENSPREG00000021140	sall4	99	63.496	Poecilia_reticulata
ENSDARG00000044485	sall4	99	45.069	ENSPPYG00000011138	SALL4	99	45.242	Pongo_abelii
ENSDARG00000044485	sall4	99	41.803	ENSPCAG00000004726	SALL4	99	42.060	Procavia_capensis
ENSDARG00000044485	sall4	99	45.447	ENSPCOG00000016321	SALL4	99	45.234	Propithecus_coquereli
ENSDARG00000044485	sall4	94	44.977	ENSPVAG00000002075	SALL4	94	45.161	Pteropus_vampyrus
ENSDARG00000044485	sall4	99	62.738	ENSPNYG00000021738	sall4	99	62.557	Pundamilia_nyererei
ENSDARG00000044485	sall4	100	76.000	ENSPNAG00000020929	sall4	100	76.000	Pygocentrus_nattereri
ENSDARG00000044485	sall4	99	42.711	ENSRNOG00000050035	Sall4	89	57.812	Rattus_norvegicus
ENSDARG00000044485	sall4	99	44.794	ENSRBIG00000039876	SALL4	99	44.978	Rhinopithecus_bieti
ENSDARG00000044485	sall4	99	44.503	ENSRROG00000036585	SALL4	99	44.686	Rhinopithecus_roxellana
ENSDARG00000044485	sall4	99	44.798	ENSSBOG00000030011	SALL4	99	44.712	Saimiri_boliviensis_boliviensis
ENSDARG00000044485	sall4	98	61.000	ENSSHAG00000018013	SALL4	90	61.000	Sarcophilus_harrisii
ENSDARG00000044485	sall4	99	64.595	ENSSFOG00015021075	sall4	99	64.505	Scleropages_formosus
ENSDARG00000044485	sall4	99	64.833	ENSSMAG00000019218	sall4	99	64.833	Scophthalmus_maximus
ENSDARG00000044485	sall4	99	65.732	ENSSDUG00000004657	sall4	99	65.884	Seriola_dumerili
ENSDARG00000044485	sall4	99	66.004	ENSSLDG00000004973	sall4	99	65.884	Seriola_lalandi_dorsalis
ENSDARG00000044485	sall4	99	64.467	ENSSPAG00000001978	sall4	99	64.557	Stegastes_partitus
ENSDARG00000044485	sall4	99	44.750	ENSSSCG00000007479	SALL4	99	44.578	Sus_scrofa
ENSDARG00000044485	sall4	99	64.318	ENSTRUG00000007410	sall4	99	64.589	Takifugu_rubripes
ENSDARG00000044485	sall4	99	63.612	ENSTNIG00000012460	sall4	99	63.793	Tetraodon_nigroviridis
ENSDARG00000044485	sall4	97	43.352	ENSTTRG00000007753	SALL4	98	43.053	Tursiops_truncatus
ENSDARG00000044485	sall4	99	46.054	ENSUAMG00000010113	SALL4	99	46.234	Ursus_americanus
ENSDARG00000044485	sall4	97	46.522	ENSUMAG00000024274	SALL4	98	46.341	Ursus_maritimus
ENSDARG00000044485	sall4	99	51.200	ENSXETG00000012326	sall4	99	51.113	Xenopus_tropicalis
ENSDARG00000044485	sall4	99	57.310	ENSXCOG00000015467	sall4	99	57.220	Xiphophorus_couchianus
ENSDARG00000044485	sall4	99	57.518	ENSXMAG00000012692	sall4	99	57.428	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003682	chromatin binding	24286030.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0035118	embryonic pectoral fin morphogenesis	16501170.	IMP	Process
GO:0045743	positive regulation of fibroblast growth factor receptor signaling pathway	16501170.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function