EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000044545 (Gene tree)
Gene ID: 402952
Gene Symbol: zgc:77262
Alias: -
Full Name: zgc:77262
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 3785 bases
Position: chr21:27197711-27201495
Accession: ZDB-GENE-040426-1811
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000119816	RRM_5	PF13893.6	4.4e-07	1	2
ENSDARP00000119816	RRM_5	PF13893.6	4.4e-07	2	2
ENSDARP00000119816	RRM_1	PF00076.22	1.2e-33	1	2
ENSDARP00000119816	RRM_1	PF00076.22	1.2e-33	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000145013	-	2644	-	ENSDARP00000119816	331 (aa)	-	Q6P0G2

Gene Model

Click here to download ENSDARG00000044545's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000044545's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000044545	zgc:77262	50	42.529	ENSEBUG00000007174	-	88	45.946	Eptatretus_burgeri
ENSDARG00000044545	zgc:77262	51	47.337	ENSHCOG00000011413	-	81	50.725	Hippocampus_comes
ENSDARG00000044545	zgc:77262	100	76.807	ENSIPUG00000021035	zgc:77262	100	74.398	Ictalurus_punctatus
ENSDARG00000044545	zgc:77262	100	52.537	ENSLACG00000006343	zgc:77262	99	50.151	Latimeria_chalumnae
ENSDARG00000044545	zgc:77262	53	42.373	ENSMZEG00005009210	-	82	44.937	Maylandia_zebra
ENSDARG00000044545	zgc:77262	50	40.000	ENSPMAG00000003433	rbm4.2	71	47.368	Petromyzon_marinus
ENSDARG00000044545	zgc:77262	56	44.920	ENSXMAG00000008059	-	82	37.722	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process