EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000044574 (Gene tree)
Gene ID
767747
Gene Symbol
rbms3
Alias
zgc:153698
Full Name
RNA binding motif%2C single stranded interacting protein
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
257398 bases
Position
chr16:39643268-39900665
Accession
ZDB-GENE-060929-244
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000112611RRM_1PF00076.229.6e-3312
ENSDARP00000112611RRM_1PF00076.229.6e-3322
ENSDARP00000115595RRM_1PF00076.221e-3112
ENSDARP00000115595RRM_1PF00076.221e-3122
ENSDARP00000123440RRM_1PF00076.221.1e-3112
ENSDARP00000123440RRM_1PF00076.221.1e-3122
ENSDARP00000115294RRM_1PF00076.221.2e-2712
ENSDARP00000115294RRM_1PF00076.221.2e-2722
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000132562-827--- (aa)--
ENSDART00000137079-696-ENSDARP00000112611194 (aa)-E9QD62
ENSDART00000139089-727--- (aa)--
ENSDART00000136766-548-ENSDARP00000115294144 (aa)-E9QH06
ENSDART00000136719-1256XM_005158228ENSDARP00000123440415 (aa)XP_005158285F1QGV3
ENSDART00000138388-1733-ENSDARP00000115595409 (aa)-F1Q8Z0
Gene Model
Click here to download ENSDARG00000044574's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000044574's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000044574rbms38933.010ENSDARG00000059259pabpc46531.148
ENSDARG00000044574rbms38737.179ENSDARG00000071375celf5a5036.250
ENSDARG00000044574rbms39237.079ENSDARG00000002131celf25342.623
ENSDARG00000044574rbms39436.957ENSDARG00000014420elavl38435.196
ENSDARG00000044574rbms39388.333ENSDARG00000044179rbms2a8970.924
ENSDARG00000044574rbms310085.034ENSDARG00000056150rbms2b8872.087
ENSDARG00000044574rbms39738.333ENSDARG00000045639elavl45938.235
ENSDARG00000044574rbms39441.353ENSDARG00000040732elavl26539.106
ENSDARG00000044574rbms38435.000ENSDARG00000006983celf3b5735.000
ENSDARG00000044574rbms39237.079ENSDARG00000005315celf15139.474
ENSDARG00000044574rbms39337.121ENSDARG00000101744elavl1b8934.426
ENSDARG00000044574rbms39285.955ENSDARG00000074023rbms1a8668.696
ENSDARG00000044574rbms39536.667ENSDARG00000038695elavl1a8234.722
ENSDARG00000044574rbms38435.000ENSDARG00000034668celf3a5635.000
ENSDARG00000044574rbms310080.263ENSDARG00000103823rbms1b7486.792
ENSDARG00000044574rbms38533.684ENSDARG00000021140pabpc1b5934.043
ENSDARG00000044574rbms38540.323ENSDARG00000017219pabpc1a5440.323
ENSDARG00000044574rbms38436.250ENSDARG00000070045celf46336.250
ENSDARG00000044574rbms39034.737ENSDARG00000002597pabpc1l6735.106
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000044574rbms39097.674ENSG00000144642RBMS310087.879Homo_sapiens
ENSDARG00000044574rbms38998.438ENSAPOG00000007266rbms39683.081Acanthochromis_polyacanthus
ENSDARG00000044574rbms39594.891ENSAPOG00000003432-9989.855Acanthochromis_polyacanthus
ENSDARG00000044574rbms37081.908ENSAMEG00000005947RBMS310081.908Ailuropoda_melanoleuca
ENSDARG00000044574rbms310089.262ENSACIG00000021113RBMS39677.717Amphilophus_citrinellus
ENSDARG00000044574rbms39594.891ENSACIG00000006987-8194.257Amphilophus_citrinellus
ENSDARG00000044574rbms39594.891ENSAOCG00000024104-9983.141Amphiprion_ocellaris
ENSDARG00000044574rbms38998.438ENSAOCG00000021274rbms310082.477Amphiprion_ocellaris
ENSDARG00000044574rbms39594.891ENSAPEG00000009481-9983.252Amphiprion_percula
ENSDARG00000044574rbms310086.364ENSAPEG00000016299rbms38690.769Amphiprion_percula
ENSDARG00000044574rbms39594.891ENSATEG00000008433-9989.614Anabas_testudineus
ENSDARG00000044574rbms39097.674ENSATEG00000024295rbms310083.333Anabas_testudineus
ENSDARG00000044574rbms38999.219ENSAPLG00000012270RBMS39985.349Anas_platyrhynchos
ENSDARG00000044574rbms39296.067ENSACAG00000028664RBMS39986.429Anolis_carolinensis
ENSDARG00000044574rbms39097.674ENSANAG00000021899RBMS310083.180Aotus_nancymaae
ENSDARG00000044574rbms38998.438ENSACLG00000018506rbms310085.176Astatotilapia_calliptera
ENSDARG00000044574rbms39594.891ENSACLG00000008976-9482.609Astatotilapia_calliptera
ENSDARG00000044574rbms39589.781ENSAMXG00000043770-10084.109Astyanax_mexicanus
ENSDARG00000044574rbms310098.611ENSAMXG00000020388rbms310095.444Astyanax_mexicanus
ENSDARG00000044574rbms310093.289ENSBTAG00000044062RBMS310085.036Bos_taurus
ENSDARG00000044574rbms39097.674ENSCJAG00000004312RBMS310082.949Callithrix_jacchus
ENSDARG00000044574rbms39097.674ENSCAFG00000005464RBMS39982.609Canis_familiaris
ENSDARG00000044574rbms39097.674ENSCAFG00020024980RBMS310082.609Canis_lupus_dingo
ENSDARG00000044574rbms310093.289ENSCHIG00000009144RBMS39985.036Capra_hircus
ENSDARG00000044574rbms37883.988ENSTSYG00000002615RBMS310083.988Carlito_syrichta
ENSDARG00000044574rbms39097.674ENSCAPG00000017783RBMS39381.868Cavia_aperea
ENSDARG00000044574rbms39596.350ENSCPOG00000006457RBMS39987.740Cavia_porcellus
ENSDARG00000044574rbms39097.674ENSCCAG00000008671RBMS310082.949Cebus_capucinus
ENSDARG00000044574rbms39097.674ENSCATG00000013222RBMS310082.488Cercocebus_atys
ENSDARG00000044574rbms39097.674ENSCLAG00000005866RBMS39985.273Chinchilla_lanigera
ENSDARG00000044574rbms36685.240ENSCSAG00000009655RBMS39985.240Chlorocebus_sabaeus
ENSDARG00000044574rbms38788.000ENSCHOG00000000758RBMS38688.000Choloepus_hoffmanni
ENSDARG00000044574rbms310088.810ENSCPBG00000022678RBMS39890.186Chrysemys_picta_bellii
ENSDARG00000044574rbms39097.674ENSCANG00000032137RBMS310082.719Colobus_angolensis_palliatus
ENSDARG00000044574rbms39097.674ENSCGRG00001007243Rbms39986.538Cricetulus_griseus_chok1gshd
ENSDARG00000044574rbms39097.674ENSCGRG00000004599Rbms39986.538Cricetulus_griseus_crigri
ENSDARG00000044574rbms310095.139ENSCSEG00000014677-9494.650Cynoglossus_semilaevis
ENSDARG00000044574rbms310087.582ENSCSEG00000010011RBMS310081.733Cynoglossus_semilaevis
ENSDARG00000044574rbms310095.139ENSCVAG00000022814-9989.157Cyprinodon_variegatus
ENSDARG00000044574rbms39295.506ENSCVAG00000022354rbms310085.071Cyprinodon_variegatus
ENSDARG00000044574rbms39097.674ENSDNOG00000016645RBMS310081.473Dasypus_novemcinctus
ENSDARG00000044574rbms39097.674ENSDORG00000007220Rbms39984.561Dipodomys_ordii
ENSDARG00000044574rbms37792.667ENSETEG00000009485-8069.429Echinops_telfairi
ENSDARG00000044574rbms310077.083ENSEBUG00000005830rbms38455.939Eptatretus_burgeri
ENSDARG00000044574rbms39097.674ENSEASG00005006152RBMS39985.511Equus_asinus_asinus
ENSDARG00000044574rbms39097.674ENSECAG00000017871RBMS39985.511Equus_caballus
ENSDARG00000044574rbms39279.213ENSEEUG00000014337RBMS310077.919Erinaceus_europaeus
ENSDARG00000044574rbms310097.222ENSELUG00000006905-9895.062Esox_lucius
ENSDARG00000044574rbms310088.816ENSELUG00000002862rbms310081.882Esox_lucius
ENSDARG00000044574rbms39097.674ENSFCAG00000002130RBMS39985.273Felis_catus
ENSDARG00000044574rbms310088.571ENSFALG00000009165RBMS39987.381Ficedula_albicollis
ENSDARG00000044574rbms39097.674ENSFDAG00000008278RBMS39985.986Fukomys_damarensis
ENSDARG00000044574rbms310090.411ENSFHEG00000004787RBMS39577.236Fundulus_heteroclitus
ENSDARG00000044574rbms36093.103ENSFHEG00000016746-9392.969Fundulus_heteroclitus
ENSDARG00000044574rbms39594.203ENSGMOG00000002600-9483.033Gadus_morhua
ENSDARG00000044574rbms310088.571ENSGALG00000011439RBMS39987.381Gallus_gallus
ENSDARG00000044574rbms310089.262ENSGAFG00000000168rbms310083.215Gambusia_affinis
ENSDARG00000044574rbms39595.620ENSGAFG00000003329-9989.880Gambusia_affinis
ENSDARG00000044574rbms36687.132ENSGAGG00000004039RBMS310087.132Gopherus_agassizii
ENSDARG00000044574rbms39097.674ENSGGOG00000007228RBMS310082.949Gorilla_gorilla
ENSDARG00000044574rbms39594.891ENSHBUG00000019785-9686.175Haplochromis_burtoni
ENSDARG00000044574rbms38998.438ENSHBUG00000021196rbms39485.502Haplochromis_burtoni
ENSDARG00000044574rbms39097.674ENSHGLG00000002170RBMS39985.748Heterocephalus_glaber_female
ENSDARG00000044574rbms39097.674ENSHGLG00100014278RBMS39985.748Heterocephalus_glaber_male
ENSDARG00000044574rbms39594.161ENSHCOG00000007894-9988.434Hippocampus_comes
ENSDARG00000044574rbms310097.222ENSIPUG00000017680rbms310095.444Ictalurus_punctatus
ENSDARG00000044574rbms39294.944ENSSTOG00000006324RBMS39985.511Ictidomys_tridecemlineatus
ENSDARG00000044574rbms38998.438ENSJJAG00000014708Rbms39982.423Jaculus_jaculus
ENSDARG00000044574rbms38998.438ENSKMAG00000020500rbms310083.916Kryptolebias_marmoratus
ENSDARG00000044574rbms310094.444ENSKMAG00000012586-9989.130Kryptolebias_marmoratus
ENSDARG00000044574rbms35291.000ENSLBEG00000006677rbms39778.327Labrus_bergylta
ENSDARG00000044574rbms39594.891ENSLBEG00000027388-9989.831Labrus_bergylta
ENSDARG00000044574rbms310089.976ENSLACG00000010581RBMS310088.067Latimeria_chalumnae
ENSDARG00000044574rbms37188.014ENSLOCG00000002328rbms310088.014Lepisosteus_oculatus
ENSDARG00000044574rbms39097.674ENSLAFG00000000354RBMS310082.838Loxodonta_africana
ENSDARG00000044574rbms39097.674ENSMFAG00000033300RBMS39985.273Macaca_fascicularis
ENSDARG00000044574rbms39097.674ENSMMUG00000004404RBMS39985.273Macaca_mulatta
ENSDARG00000044574rbms39097.674ENSMNEG00000035839RBMS310082.719Macaca_nemestrina
ENSDARG00000044574rbms39097.674ENSMLEG00000029464RBMS310082.488Mandrillus_leucophaeus
ENSDARG00000044574rbms39594.161ENSMAMG00000002176-8392.781Mastacembelus_armatus
ENSDARG00000044574rbms38998.438ENSMAMG00000024043rbms310083.138Mastacembelus_armatus
ENSDARG00000044574rbms39594.891ENSMZEG00005026469-9687.383Maylandia_zebra
ENSDARG00000044574rbms38998.438ENSMZEG00005006308rbms310085.176Maylandia_zebra
ENSDARG00000044574rbms39097.674ENSMAUG00000016436Rbms39986.538Mesocricetus_auratus
ENSDARG00000044574rbms39097.674ENSMICG00000049249RBMS310082.949Microcebus_murinus
ENSDARG00000044574rbms310095.139ENSMOCG00000006997Rbms39985.577Microtus_ochrogaster
ENSDARG00000044574rbms310086.842ENSMMOG00000008471RBMS38891.385Mola_mola
ENSDARG00000044574rbms39594.891ENSMMOG00000015071-9988.835Mola_mola
ENSDARG00000044574rbms39395.028ENSMODG00000015125RBMS39978.971Monodelphis_domestica
ENSDARG00000044574rbms39594.891ENSMALG00000009155-9990.097Monopterus_albus
ENSDARG00000044574rbms39097.674ENSMALG00000019536RBMS310082.670Monopterus_albus
ENSDARG00000044574rbms39594.891MGP_CAROLIEiJ_G0032783Rbms310090.821Mus_caroli
ENSDARG00000044574rbms39097.674ENSMUSG00000039607Rbms310092.271Mus_musculus
ENSDARG00000044574rbms39097.674MGP_PahariEiJ_G0015650Rbms310092.271Mus_pahari
ENSDARG00000044574rbms39097.674MGP_SPRETEiJ_G0033930Rbms310092.271Mus_spretus
ENSDARG00000044574rbms39097.674ENSMPUG00000011956RBMS310082.838Mustela_putorius_furo
ENSDARG00000044574rbms39097.674ENSMLUG00000000659RBMS310085.511Myotis_lucifugus
ENSDARG00000044574rbms39097.674ENSNGAG00000014039Rbms39987.260Nannospalax_galili
ENSDARG00000044574rbms39594.891ENSNBRG00000018065-9990.097Neolamprologus_brichardi
ENSDARG00000044574rbms39097.674ENSNLEG00000004129RBMS310082.949Nomascus_leucogenys
ENSDARG00000044574rbms39097.674ENSMEUG00000004772RBMS39975.862Notamacropus_eugenii
ENSDARG00000044574rbms39097.674ENSOPRG00000006808RBMS38582.488Ochotona_princeps
ENSDARG00000044574rbms39097.674ENSODEG00000003651RBMS39985.273Octodon_degus
ENSDARG00000044574rbms38998.438ENSONIG00000007172rbms310077.778Oreochromis_niloticus
ENSDARG00000044574rbms39296.067ENSOANG00000010529RBMS39983.753Ornithorhynchus_anatinus
ENSDARG00000044574rbms39097.674ENSOCUG00000004840RBMS39981.693Oryctolagus_cuniculus
ENSDARG00000044574rbms310095.139ENSORLG00000002306-9988.889Oryzias_latipes
ENSDARG00000044574rbms39097.674ENSORLG00000005370RBMS310081.754Oryzias_latipes
ENSDARG00000044574rbms39097.674ENSORLG00020022674RBMS310081.517Oryzias_latipes_hni
ENSDARG00000044574rbms39594.891ENSORLG00020008496-9989.130Oryzias_latipes_hni
ENSDARG00000044574rbms39097.674ENSORLG00015005509rbms310081.991Oryzias_latipes_hsok
ENSDARG00000044574rbms39594.891ENSORLG00015015719-9989.130Oryzias_latipes_hsok
ENSDARG00000044574rbms310095.139ENSOMEG00000007677-9688.798Oryzias_melastigma
ENSDARG00000044574rbms310089.933ENSOMEG00000014805RBMS310082.464Oryzias_melastigma
ENSDARG00000044574rbms310093.289ENSOARG00000014684RBMS39981.922Ovis_aries
ENSDARG00000044574rbms39097.674ENSPPAG00000036519RBMS310082.949Pan_paniscus
ENSDARG00000044574rbms38998.438ENSPPRG00000002761RBMS310082.488Panthera_pardus
ENSDARG00000044574rbms38998.438ENSPTIG00000011568RBMS310085.036Panthera_tigris_altaica
ENSDARG00000044574rbms39097.674ENSPTRG00000014709RBMS39985.511Pan_troglodytes
ENSDARG00000044574rbms39097.674ENSPANG00000010234RBMS310082.488Papio_anubis
ENSDARG00000044574rbms310098.611ENSPKIG00000016025-8683.004Paramormyrops_kingsleyae
ENSDARG00000044574rbms39494.074ENSPKIG00000007989-10091.860Paramormyrops_kingsleyae
ENSDARG00000044574rbms310088.095ENSPSIG00000005269RBMS39986.905Pelodiscus_sinensis
ENSDARG00000044574rbms310095.139ENSPMGG00000021683-9690.164Periophthalmus_magnuspinnatus
ENSDARG00000044574rbms310088.667ENSPMGG00000021544rbms38589.231Periophthalmus_magnuspinnatus
ENSDARG00000044574rbms39097.674ENSPEMG00000001117Rbms39983.981Peromyscus_maniculatus_bairdii
ENSDARG00000044574rbms39097.674ENSPCIG00000006106RBMS38986.449Phascolarctos_cinereus
ENSDARG00000044574rbms39295.506ENSPFOG00000017887rbms310083.215Poecilia_formosa
ENSDARG00000044574rbms37875.214ENSPLAG00000002862-6084.375Poecilia_latipinna
ENSDARG00000044574rbms36093.103ENSPLAG00000005161-7792.969Poecilia_latipinna
ENSDARG00000044574rbms36993.985ENSPLAG00000016866-8384.783Poecilia_latipinna
ENSDARG00000044574rbms36993.985ENSPMEG00000012831-7294.479Poecilia_mexicana
ENSDARG00000044574rbms36584.848ENSPMEG00000013853-6398.718Poecilia_mexicana
ENSDARG00000044574rbms39594.891ENSPMEG00000002993-9989.398Poecilia_mexicana
ENSDARG00000044574rbms310089.262ENSPREG00000011880rbms39983.771Poecilia_reticulata
ENSDARG00000044574rbms39594.891ENSPREG00000018221-9792.063Poecilia_reticulata
ENSDARG00000044574rbms310071.396ENSPPYG00000014050RBMS38269.794Pongo_abelii
ENSDARG00000044574rbms39174.432ENSPCAG00000006307RBMS39963.158Procavia_capensis
ENSDARG00000044574rbms39097.674ENSPCOG00000017136RBMS310083.180Propithecus_coquereli
ENSDARG00000044574rbms38293.711ENSPVAG00000014037RBMS39974.828Pteropus_vampyrus
ENSDARG00000044574rbms38998.438ENSPNYG00000010546rbms310084.941Pundamilia_nyererei
ENSDARG00000044574rbms39594.891ENSPNYG00000012624-9990.097Pundamilia_nyererei
ENSDARG00000044574rbms310099.306ENSPNAG00000001800rbms310095.923Pygocentrus_nattereri
ENSDARG00000044574rbms310088.889ENSPNAG00000026763-7488.690Pygocentrus_nattereri
ENSDARG00000044574rbms39097.674ENSRNOG00000025881Rbms310086.779Rattus_norvegicus
ENSDARG00000044574rbms39097.674ENSRBIG00000035863RBMS310082.488Rhinopithecus_bieti
ENSDARG00000044574rbms39097.674ENSRROG00000027512RBMS39385.039Rhinopithecus_roxellana
ENSDARG00000044574rbms39097.674ENSSBOG00000020232RBMS310082.949Saimiri_boliviensis_boliviensis
ENSDARG00000044574rbms39296.067ENSSHAG00000002411RBMS39482.609Sarcophilus_harrisii
ENSDARG00000044574rbms310097.222ENSSFOG00015008578rbms39990.291Scleropages_formosus
ENSDARG00000044574rbms310095.139ENSSMAG00000020065-9393.048Scophthalmus_maximus
ENSDARG00000044574rbms39293.258ENSSMAG00000004997rbms39985.870Scophthalmus_maximus
ENSDARG00000044574rbms39594.891ENSSDUG00000019287-9989.855Seriola_dumerili
ENSDARG00000044574rbms38998.438ENSSDUG00000013656RBMS310085.246Seriola_dumerili
ENSDARG00000044574rbms38998.438ENSSLDG00000020276RBMS310084.884Seriola_lalandi_dorsalis
ENSDARG00000044574rbms39594.891ENSSLDG00000013224-9989.855Seriola_lalandi_dorsalis
ENSDARG00000044574rbms39097.674ENSSARG00000000695RBMS39274.780Sorex_araneus
ENSDARG00000044574rbms37085.324ENSSPUG00000017197RBMS39884.228Sphenodon_punctatus
ENSDARG00000044574rbms38998.438ENSSPAG00000020693rbms310085.047Stegastes_partitus
ENSDARG00000044574rbms39594.891ENSSPAG00000003983-9982.217Stegastes_partitus
ENSDARG00000044574rbms310093.289ENSSSCG00000036381RBMS39787.895Sus_scrofa
ENSDARG00000044574rbms36894.656ENSTGUG00000003572RBMS310084.431Taeniopygia_guttata
ENSDARG00000044574rbms39980.191ENSTRUG00000007482-9979.808Takifugu_rubripes
ENSDARG00000044574rbms39096.899ENSTRUG00000021719RBMS310081.499Takifugu_rubripes
ENSDARG00000044574rbms39097.674ENSTBEG00000005362RBMS39288.270Tupaia_belangeri
ENSDARG00000044574rbms310092.617ENSTTRG00000006202RBMS39982.028Tursiops_truncatus
ENSDARG00000044574rbms39097.674ENSUMAG00000000263RBMS39982.609Ursus_maritimus
ENSDARG00000044574rbms38992.969ENSVPAG00000003842RBMS39373.958Vicugna_pacos
ENSDARG00000044574rbms39097.674ENSVVUG00000004660RBMS39193.839Vulpes_vulpes
ENSDARG00000044574rbms37180.519ENSXETG00000032055RBMS39980.519Xenopus_tropicalis
ENSDARG00000044574rbms310079.167ENSXCOG00000019600-9573.925Xiphophorus_couchianus
ENSDARG00000044574rbms39594.891ENSXMAG00000014382-9989.639Xiphophorus_maculatus
ENSDARG00000044574rbms310089.262ENSXMAG00000021783rbms310083.019Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0017015regulation of transforming growth factor beta receptor signaling pathway23091072.IMPProcess
GO:0061035regulation of cartilage development23091072.IMPProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us