EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000044575 (Gene tree)
Gene ID: 114427
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 46045 bases
Position: chr16:10429770-10475814
Accession: ZDB-GENE-010601-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000142328	tRNA-synt_1g	PF09334.11	4.2e-13	1	1
ENSDARP00000142328	Anticodon_1	PF08264.13	1.1e-35	1	1
ENSDARP00000142328	tRNA-synt_1	PF00133.22	8.3e-208	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000173132	-	4150	-	ENSDARP00000142328	1271 (aa)	-	F1Q740

Gene Model

Click here to download ENSDARG00000044575's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000044575's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000044575	vars	80	48.646	ENSDARG00000056717	vars2	93	49.748

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000044575	vars	100	64.802	ENSG00000204394	VARS	99	73.006	Homo_sapiens
ENSDARG00000044575	vars	94	84.801	ENSAPOG00000020691	vars	96	84.801	Acanthochromis_polyacanthus
ENSDARG00000044575	vars	94	84.801	ENSAPOG00000020921	vars	96	84.801	Acanthochromis_polyacanthus
ENSDARG00000044575	vars	100	64.674	ENSAMEG00000006417	VARS	100	64.679	Ailuropoda_melanoleuca
ENSDARG00000044575	vars	100	83.034	ENSACIG00000013752	vars	100	83.034	Amphilophus_citrinellus
ENSDARG00000044575	vars	100	84.483	ENSAOCG00000002447	vars	99	84.326	Amphiprion_ocellaris
ENSDARG00000044575	vars	100	84.561	ENSAPEG00000010638	vars	99	84.404	Amphiprion_percula
ENSDARG00000044575	vars	100	80.893	ENSATEG00000020219	vars	100	80.893	Anabas_testudineus
ENSDARG00000044575	vars	90	72.227	ENSACAG00000029133	-	99	72.276	Anolis_carolinensis
ENSDARG00000044575	vars	100	64.619	ENSANAG00000015453	VARS	100	64.624	Aotus_nancymaae
ENSDARG00000044575	vars	100	84.182	ENSACLG00000025699	vars	97	84.182	Astatotilapia_calliptera
ENSDARG00000044575	vars	95	83.746	ENSAMXG00000017716	vars	96	83.828	Astyanax_mexicanus
ENSDARG00000044575	vars	100	64.619	ENSBTAG00000005631	VARS	100	64.624	Bos_taurus
ENSDARG00000044575	vars	100	64.413	ENSCJAG00000002604	VARS	100	64.419	Callithrix_jacchus
ENSDARG00000044575	vars	100	64.363	ENSCAFG00000000636	VARS	100	64.369	Canis_familiaris
ENSDARG00000044575	vars	94	65.480	ENSCAFG00020020790	VARS	96	65.483	Canis_lupus_dingo
ENSDARG00000044575	vars	100	64.930	ENSCHIG00000011008	VARS	100	64.934	Capra_hircus
ENSDARG00000044575	vars	100	64.724	ENSTSYG00000001567	VARS	100	64.651	Carlito_syrichta
ENSDARG00000044575	vars	91	68.335	ENSCAPG00000013736	VARS	98	68.103	Cavia_aperea
ENSDARG00000044575	vars	100	64.829	ENSCPOG00000000870	VARS	100	64.701	Cavia_porcellus
ENSDARG00000044575	vars	100	64.802	ENSCCAG00000035656	VARS	100	64.491	Cebus_capucinus
ENSDARG00000044575	vars	100	65.241	ENSCATG00000022394	VARS	100	65.089	Cercocebus_atys
ENSDARG00000044575	vars	93	64.052	ENSCLAG00000009470	VARS	97	63.282	Chinchilla_lanigera
ENSDARG00000044575	vars	100	65.190	ENSCSAG00000008784	VARS	100	65.039	Chlorocebus_sabaeus
ENSDARG00000044575	vars	77	75.410	ENSCPBG00000007943	VARS	96	75.205	Chrysemys_picta_bellii
ENSDARG00000044575	vars	100	65.346	ENSCANG00000033570	VARS	100	65.194	Colobus_angolensis_palliatus
ENSDARG00000044575	vars	100	64.852	ENSCGRG00001005686	Vars	100	64.961	Cricetulus_griseus_chok1gshd
ENSDARG00000044575	vars	93	63.240	ENSCGRG00000013352	Vars	78	63.361	Cricetulus_griseus_crigri
ENSDARG00000044575	vars	100	79.859	ENSCSEG00000019652	vars	100	79.702	Cynoglossus_semilaevis
ENSDARG00000044575	vars	100	84.808	ENSCVAG00000022398	vars	100	84.730	Cyprinodon_variegatus
ENSDARG00000044575	vars	82	72.004	ENSDORG00000016433	Vars	93	71.797	Dipodomys_ordii
ENSDARG00000044575	vars	69	74.322	ENSETEG00000003824	VARS	77	74.322	Echinops_telfairi
ENSDARG00000044575	vars	52	72.870	ENSEBUG00000007086	vars	84	72.870	Eptatretus_burgeri
ENSDARG00000044575	vars	57	65.021	ENSEBUG00000004637	vars	100	65.021	Eptatretus_burgeri
ENSDARG00000044575	vars	100	64.802	ENSEASG00005015673	VARS	100	64.806	Equus_asinus_asinus
ENSDARG00000044575	vars	100	64.752	ENSECAG00000014620	VARS	100	64.829	Equus_caballus
ENSDARG00000044575	vars	72	71.178	ENSEEUG00000004116	VARS	72	71.178	Erinaceus_europaeus
ENSDARG00000044575	vars	100	83.177	ENSELUG00000006550	vars	97	83.177	Esox_lucius
ENSDARG00000044575	vars	100	64.463	ENSFCAG00000004510	VARS	100	64.469	Felis_catus
ENSDARG00000044575	vars	83	70.000	ENSFDAG00000011401	VARS	100	70.452	Fukomys_damarensis
ENSDARG00000044575	vars	100	84.417	ENSFHEG00000010672	vars	100	84.495	Fundulus_heteroclitus
ENSDARG00000044575	vars	100	80.156	ENSGMOG00000014908	vars	100	80.312	Gadus_morhua
ENSDARG00000044575	vars	100	84.417	ENSGAFG00000021630	vars	100	84.417	Gambusia_affinis
ENSDARG00000044575	vars	100	80.896	ENSGACG00000009601	vars	100	81.211	Gasterosteus_aculeatus
ENSDARG00000044575	vars	50	59.535	ENSGAGG00000006508	-	91	59.688	Gopherus_agassizii
ENSDARG00000044575	vars	100	65.008	ENSGGOG00000011364	VARS	100	64.856	Gorilla_gorilla
ENSDARG00000044575	vars	100	84.260	ENSHBUG00000017151	vars	97	84.260	Haplochromis_burtoni
ENSDARG00000044575	vars	100	64.747	ENSHGLG00000011646	VARS	100	64.514	Heterocephalus_glaber_female
ENSDARG00000044575	vars	93	61.646	ENSHGLG00100018062	VARS	99	61.399	Heterocephalus_glaber_male
ENSDARG00000044575	vars	99	81.176	ENSHCOG00000012198	vars	99	81.176	Hippocampus_comes
ENSDARG00000044575	vars	100	86.421	ENSIPUG00000005218	vars	100	86.342	Ictalurus_punctatus
ENSDARG00000044575	vars	100	64.852	ENSSTOG00000013112	VARS	100	64.701	Ictidomys_tridecemlineatus
ENSDARG00000044575	vars	100	63.969	ENSJJAG00000019749	-	100	63.707	Jaculus_jaculus
ENSDARG00000044575	vars	95	54.836	ENSJJAG00000015343	-	98	54.041	Jaculus_jaculus
ENSDARG00000044575	vars	100	82.104	ENSKMAG00000009455	vars	100	82.261	Kryptolebias_marmoratus
ENSDARG00000044575	vars	100	81.603	ENSLBEG00000010341	vars	100	80.754	Labrus_bergylta
ENSDARG00000044575	vars	94	67.594	ENSLACG00000015232	VARS	99	67.863	Latimeria_chalumnae
ENSDARG00000044575	vars	100	74.941	ENSLOCG00000004240	vars	100	75.412	Lepisosteus_oculatus
ENSDARG00000044575	vars	100	64.230	ENSLAFG00000023090	VARS	100	64.075	Loxodonta_africana
ENSDARG00000044575	vars	100	65.086	ENSMFAG00000001032	VARS	100	64.934	Macaca_fascicularis
ENSDARG00000044575	vars	100	65.086	ENSMMUG00000006828	VARS	100	64.934	Macaca_mulatta
ENSDARG00000044575	vars	100	65.086	ENSMNEG00000042072	VARS	100	64.934	Macaca_nemestrina
ENSDARG00000044575	vars	100	65.163	ENSMLEG00000039307	VARS	100	65.012	Mandrillus_leucophaeus
ENSDARG00000044575	vars	100	84.169	ENSMAMG00000003949	vars	100	84.248	Mastacembelus_armatus
ENSDARG00000044575	vars	100	84.182	ENSMZEG00005018327	vars	97	84.182	Maylandia_zebra
ENSDARG00000044575	vars	100	65.268	ENSMAUG00000006715	Vars	100	65.426	Mesocricetus_auratus
ENSDARG00000044575	vars	100	64.697	ENSMICG00000003548	VARS	100	64.313	Microcebus_murinus
ENSDARG00000044575	vars	100	64.202	ENSMOCG00000015404	Vars	100	63.891	Microtus_ochrogaster
ENSDARG00000044575	vars	100	80.486	ENSMMOG00000015801	vars	100	80.329	Mola_mola
ENSDARG00000044575	vars	100	65.163	ENSMODG00000015204	-	100	65.012	Monodelphis_domestica
ENSDARG00000044575	vars	99	83.542	ENSMALG00000022532	vars	99	83.542	Monopterus_albus
ENSDARG00000044575	vars	100	65.447	MGP_CAROLIEiJ_G0021491	Vars	100	65.058	Mus_caroli
ENSDARG00000044575	vars	100	65.370	ENSMUSG00000007029	Vars	100	65.214	Mus_musculus
ENSDARG00000044575	vars	100	65.447	MGP_PahariEiJ_G0020486	Vars	100	65.058	Mus_pahari
ENSDARG00000044575	vars	100	65.292	MGP_SPRETEiJ_G0022396	Vars	100	65.136	Mus_spretus
ENSDARG00000044575	vars	100	64.852	ENSMPUG00000010821	VARS	100	64.806	Mustela_putorius_furo
ENSDARG00000044575	vars	78	67.694	ENSMLUG00000013126	VARS	100	67.527	Myotis_lucifugus
ENSDARG00000044575	vars	100	65.241	ENSNGAG00000012151	Vars	100	65.058	Nannospalax_galili
ENSDARG00000044575	vars	100	84.182	ENSNBRG00000020520	vars	100	84.182	Neolamprologus_brichardi
ENSDARG00000044575	vars	100	64.697	ENSNLEG00000006351	VARS	100	64.701	Nomascus_leucogenys
ENSDARG00000044575	vars	94	72.289	ENSMEUG00000011378	VARS	95	72.306	Notamacropus_eugenii
ENSDARG00000044575	vars	100	65.268	ENSOPRG00000003607	VARS	100	65.349	Ochotona_princeps
ENSDARG00000044575	vars	100	64.386	ENSODEG00000017681	VARS	100	64.230	Octodon_degus
ENSDARG00000044575	vars	100	83.632	ENSONIG00000013064	vars	100	85.901	Oreochromis_niloticus
ENSDARG00000044575	vars	77	66.902	ENSOANG00000005400	VARS	98	67.138	Ornithorhynchus_anatinus
ENSDARG00000044575	vars	100	64.125	ENSOCUG00000022463	VARS	100	63.454	Oryctolagus_cuniculus
ENSDARG00000044575	vars	100	83.022	ENSORLG00000013063	vars	100	82.710	Oryzias_latipes
ENSDARG00000044575	vars	100	83.333	ENSORLG00020003504	vars	100	83.255	Oryzias_latipes_hni
ENSDARG00000044575	vars	100	83.554	ENSORLG00015009001	vars	100	83.555	Oryzias_latipes_hsok
ENSDARG00000044575	vars	100	84.116	ENSOMEG00000015016	vars	100	83.868	Oryzias_melastigma
ENSDARG00000044575	vars	100	64.308	ENSOGAG00000007515	VARS	100	64.152	Otolemur_garnettii
ENSDARG00000044575	vars	100	64.802	ENSPPAG00000034012	VARS	100	64.806	Pan_paniscus
ENSDARG00000044575	vars	100	64.619	ENSPPRG00000014855	VARS	100	64.624	Panthera_pardus
ENSDARG00000044575	vars	86	68.624	ENSPTIG00000010462	VARS	94	68.202	Panthera_tigris_altaica
ENSDARG00000044575	vars	100	64.802	ENSPTRG00000017985	VARS	100	64.806	Pan_troglodytes
ENSDARG00000044575	vars	100	63.679	ENSPANG00000014565	VARS	100	63.531	Papio_anubis
ENSDARG00000044575	vars	100	81.187	ENSPKIG00000016304	vars	100	81.109	Paramormyrops_kingsleyae
ENSDARG00000044575	vars	100	81.790	ENSPMGG00000023909	vars	100	81.476	Periophthalmus_magnuspinnatus
ENSDARG00000044575	vars	100	65.163	ENSPEMG00000006639	Vars	100	65.012	Peromyscus_maniculatus_bairdii
ENSDARG00000044575	vars	100	64.386	ENSPCIG00000018553	VARS	100	64.236	Phascolarctos_cinereus
ENSDARG00000044575	vars	100	84.652	ENSPFOG00000015690	vars	100	84.573	Poecilia_formosa
ENSDARG00000044575	vars	100	84.573	ENSPLAG00000009590	vars	100	84.495	Poecilia_latipinna
ENSDARG00000044575	vars	100	84.495	ENSPMEG00000004708	vars	100	84.417	Poecilia_mexicana
ENSDARG00000044575	vars	100	79.561	ENSPREG00000013264	vars	99	87.873	Poecilia_reticulata
ENSDARG00000044575	vars	100	63.481	ENSPPYG00000016460	VARS	100	63.333	Pongo_abelii
ENSDARG00000044575	vars	86	67.914	ENSPCAG00000013565	VARS	86	67.736	Procavia_capensis
ENSDARG00000044575	vars	100	64.569	ENSPCOG00000010942	VARS	100	64.336	Propithecus_coquereli
ENSDARG00000044575	vars	100	62.578	ENSPVAG00000012403	VARS	100	62.326	Pteropus_vampyrus
ENSDARG00000044575	vars	100	84.338	ENSPNYG00000022511	vars	100	84.338	Pundamilia_nyererei
ENSDARG00000044575	vars	100	86.902	ENSPNAG00000020962	vars	100	86.824	Pygocentrus_nattereri
ENSDARG00000044575	vars	100	65.086	ENSRNOG00000000867	Vars	100	64.619	Rattus_norvegicus
ENSDARG00000044575	vars	100	65.268	ENSRBIG00000041669	VARS	100	65.116	Rhinopithecus_bieti
ENSDARG00000044575	vars	100	65.268	ENSRROG00000045490	VARS	100	65.116	Rhinopithecus_roxellana
ENSDARG00000044575	vars	100	64.258	ENSSBOG00000035402	VARS	100	64.264	Saimiri_boliviensis_boliviensis
ENSDARG00000044575	vars	100	64.065	ENSSHAG00000006937	VARS	100	64.176	Sarcophilus_harrisii
ENSDARG00000044575	vars	100	81.235	ENSSFOG00015014272	vars	98	85.264	Scleropages_formosus
ENSDARG00000044575	vars	100	83.007	ENSSMAG00000009596	vars	99	83.007	Scophthalmus_maximus
ENSDARG00000044575	vars	100	85.121	ENSSDUG00000014177	vars	100	85.121	Seriola_dumerili
ENSDARG00000044575	vars	100	85.200	ENSSLDG00000025316	vars	100	85.200	Seriola_lalandi_dorsalis
ENSDARG00000044575	vars	100	84.248	ENSSPAG00000017068	vars	100	84.248	Stegastes_partitus
ENSDARG00000044575	vars	100	64.674	ENSSSCG00000038950	VARS	100	64.674	Sus_scrofa
ENSDARG00000044575	vars	82	77.756	ENSTRUG00000012307	vars	97	77.321	Takifugu_rubripes
ENSDARG00000044575	vars	100	82.003	ENSTNIG00000008011	vars	100	82.003	Tetraodon_nigroviridis
ENSDARG00000044575	vars	100	58.521	ENSTTRG00000014128	VARS	100	58.366	Tursiops_truncatus
ENSDARG00000044575	vars	100	63.142	ENSUAMG00000010424	VARS	100	63.191	Ursus_americanus
ENSDARG00000044575	vars	100	59.548	ENSUMAG00000013486	VARS	98	64.973	Ursus_maritimus
ENSDARG00000044575	vars	100	64.651	ENSVVUG00000021323	VARS	100	64.391	Vulpes_vulpes
ENSDARG00000044575	vars	100	63.313	ENSXETG00000024076	vars	100	62.937	Xenopus_tropicalis
ENSDARG00000044575	vars	100	82.537	ENSXCOG00000019172	vars	100	82.537	Xiphophorus_couchianus
ENSDARG00000044575	vars	100	84.338	ENSXMAG00000010927	vars	100	84.260	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004832	valine-tRNA ligase activity	21873635.	IBA	Function
GO:0004832	valine-tRNA ligase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006412	translation	-	IEA	Process
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0006438	valyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0006438	valyl-tRNA aminoacylation	-	IEA	Process
GO:0016874	ligase activity	-	IEA	Function