EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000045373 (Gene tree)
Gene ID
406543
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein%2C nuclear 1
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
18232 bases
Position
chr24:14559328-14577559
Accession
ZDB-GENE-040426-2401
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000113199RRM_1PF00076.222.2e-1711
ENSDARP00000124946RRM_1PF00076.222.4e-1711
ENSDARP00000100125RRM_1PF00076.222.5e-1711
ENSDARP00000066721RRM_1PF00076.223.8e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000066722-1737-ENSDARP00000066721284 (aa)-Q6NUT4
ENSDART00000135426-2289-ENSDARP00000113199220 (aa)-E9QGV8
ENSDART00000109088-2661-ENSDARP00000100125232 (aa)-A7YYD9
ENSDART00000140624-843XM_005162637ENSDARP00000124946217 (aa)XP_005162694F8W5X1
Gene Model
Click here to download ENSDARG00000045373's gene model file
Pathways
Pathway IDPathway NameSource
dre03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000045373's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000045373pabpn18154.545ENSDARG00000087996pabpn1l9153.889
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000045373pabpn19973.391ENSG00000258643BCL2L2-PABPN17073.391Homo_sapiens
ENSDARG00000045373pabpn18683.495ENSG00000100836PABPN19483.333Homo_sapiens
ENSDARG00000045373pabpn110096.983ENSAPOG00000016425pabpn110096.983Acanthochromis_polyacanthus
ENSDARG00000045373pabpn18185.263ENSAMEG00000007048BCL2L2-PABPN110085.263Ailuropoda_melanoleuca
ENSDARG00000045373pabpn110096.313ENSACIG00000021744pabpn110097.727Amphilophus_citrinellus
ENSDARG00000045373pabpn110096.983ENSAOCG00000015805pabpn110096.983Amphiprion_ocellaris
ENSDARG00000045373pabpn110096.983ENSAPEG00000009623pabpn110096.983Amphiprion_percula
ENSDARG00000045373pabpn110097.414ENSATEG00000020531pabpn110097.414Anabas_testudineus
ENSDARG00000045373pabpn18185.263ENSACAG00000006185-8172.500Anolis_carolinensis
ENSDARG00000045373pabpn18584.500ENSANAG00000024513-8475.732Aotus_nancymaae
ENSDARG00000045373pabpn110095.872ENSACLG00000016374pabpn110094.774Astatotilapia_calliptera
ENSDARG00000045373pabpn110097.738ENSAMXG00000000452pabpn110098.305Astyanax_mexicanus
ENSDARG00000045373pabpn17885.632ENSBTAG00000050594-7680.808Bos_taurus
ENSDARG00000045373pabpn18584.500ENSBTAG00000006884PABPN18470.120Bos_taurus
ENSDARG00000045373pabpn18184.896ENSBTAG00000053753-7184.896Bos_taurus
ENSDARG00000045373pabpn16559.589WBGene00003904pabp-28655.249Caenorhabditis_elegans
ENSDARG00000045373pabpn17181.548ENSCJAG00000004407-8481.548Callithrix_jacchus
ENSDARG00000045373pabpn19976.824ENSCJAG00000007960-8477.253Callithrix_jacchus
ENSDARG00000045373pabpn18683.495ENSCAFG00000011482PABPN18671.591Canis_familiaris
ENSDARG00000045373pabpn18683.495ENSCAFG00020006651-8270.518Canis_lupus_dingo
ENSDARG00000045373pabpn18683.495ENSCAFG00020007298-8270.518Canis_lupus_dingo
ENSDARG00000045373pabpn18683.495ENSCHIG00000012184PABPN18270.518Capra_hircus
ENSDARG00000045373pabpn19973.391ENSTSYG00000033996BCL2L2-PABPN19483.333Carlito_syrichta
ENSDARG00000045373pabpn16482.734ENSCAPG00000009461-9982.734Cavia_aperea
ENSDARG00000045373pabpn18683.010ENSCPOG00000025574PABPN16882.775Cavia_porcellus
ENSDARG00000045373pabpn19976.824ENSCCAG00000033954BCL2L2-PABPN18477.253Cebus_capucinus
ENSDARG00000045373pabpn19976.824ENSCATG00000038536BCL2L2-PABPN18477.253Cercocebus_atys
ENSDARG00000045373pabpn19158.696ENSCLAG00000012423PABPN15282.734Chinchilla_lanigera
ENSDARG00000045373pabpn18682.039ENSCSAG00000016036PABPN16881.818Chlorocebus_sabaeus
ENSDARG00000045373pabpn18973.810ENSCHOG00000004798BCL2L2-PABPN19271.818Choloepus_hoffmanni
ENSDARG00000045373pabpn17183.974ENSCPBG00000026060-9483.929Chrysemys_picta_bellii
ENSDARG00000045373pabpn19064.929ENSCING00000012468-8961.611Ciona_intestinalis
ENSDARG00000045373pabpn17666.292ENSCSAVG00000002001-9361.078Ciona_savignyi
ENSDARG00000045373pabpn19973.391ENSCANG00000009750BCL2L2-PABPN19483.333Colobus_angolensis_palliatus
ENSDARG00000045373pabpn18572.222ENSCANG00000030980-8764.286Colobus_angolensis_palliatus
ENSDARG00000045373pabpn18683.010ENSCGRG00001019696Pabpn19482.738Cricetulus_griseus_chok1gshd
ENSDARG00000045373pabpn16691.837ENSCGRG00000011102Pabpn19191.837Cricetulus_griseus_crigri
ENSDARG00000045373pabpn110096.552ENSCSEG00000008774pabpn110096.552Cynoglossus_semilaevis
ENSDARG00000045373pabpn110091.453ENSCVAG00000003152pabpn110092.735Cyprinodon_variegatus
ENSDARG00000045373pabpn18683.495ENSDNOG00000023682PABPN18270.518Dasypus_novemcinctus
ENSDARG00000045373pabpn16083.459ENSDORG00000023928-8582.787Dipodomys_ordii
ENSDARG00000045373pabpn18682.524ENSDORG00000028966-6882.297Dipodomys_ordii
ENSDARG00000045373pabpn110057.563FBgn0005648Pabp29757.895Drosophila_melanogaster
ENSDARG00000045373pabpn19972.414ENSEBUG00000002322pabpn19972.414Eptatretus_burgeri
ENSDARG00000045373pabpn18683.495ENSEASG00005011716PABPN18270.518Equus_asinus_asinus
ENSDARG00000045373pabpn18583.505ENSECAG00000011652PABPN18570.635Equus_caballus
ENSDARG00000045373pabpn18681.068ENSEEUG00000012973-6979.310Erinaceus_europaeus
ENSDARG00000045373pabpn110094.937ENSELUG00000022654pabpn110094.937Esox_lucius
ENSDARG00000045373pabpn18683.495ENSFCAG00000031922PABPN18270.518Felis_catus
ENSDARG00000045373pabpn17183.333ENSFDAG00000018381BCL2L2-PABPN19483.333Fukomys_damarensis
ENSDARG00000045373pabpn110093.966ENSFHEG00000007215pabpn110093.966Fundulus_heteroclitus
ENSDARG00000045373pabpn110096.833ENSGMOG00000003922pabpn110095.088Gadus_morhua
ENSDARG00000045373pabpn18382.323ENSGALG00000052930-6380.180Gallus_gallus
ENSDARG00000045373pabpn110096.154ENSGAFG00000017099pabpn110096.154Gambusia_affinis
ENSDARG00000045373pabpn110096.313ENSGACG00000002167pabpn110095.070Gasterosteus_aculeatus
ENSDARG00000045373pabpn18969.712ENSGGOG00000039675-9165.000Gorilla_gorilla
ENSDARG00000045373pabpn18772.115ENSGGOG00000025919-9869.799Gorilla_gorilla
ENSDARG00000045373pabpn19976.824ENSGGOG00000022683-8477.253Gorilla_gorilla
ENSDARG00000045373pabpn110097.414ENSHBUG00000019523pabpn110097.414Haplochromis_burtoni
ENSDARG00000045373pabpn18375.532ENSHGLG00000018588-7075.532Heterocephalus_glaber_female
ENSDARG00000045373pabpn17164.072ENSHGLG00000009842-9364.072Heterocephalus_glaber_female
ENSDARG00000045373pabpn18683.010ENSHGLG00000002927-9291.837Heterocephalus_glaber_female
ENSDARG00000045373pabpn17170.659ENSHGLG00100018935-9473.837Heterocephalus_glaber_male
ENSDARG00000045373pabpn18375.532ENSHGLG00100015565-8765.939Heterocephalus_glaber_male
ENSDARG00000045373pabpn19972.398ENSHGLG00100006673-9291.837Heterocephalus_glaber_male
ENSDARG00000045373pabpn110096.818ENSHCOG00000004655pabpn110096.121Hippocampus_comes
ENSDARG00000045373pabpn110090.517ENSIPUG00000000180-9990.517Ictalurus_punctatus
ENSDARG00000045373pabpn110099.091ENSIPUG00000008085PABPN110098.707Ictalurus_punctatus
ENSDARG00000045373pabpn17183.333ENSSTOG00000029847BCL2L2-PABPN19483.333Ictidomys_tridecemlineatus
ENSDARG00000045373pabpn17183.333ENSJJAG00000023507Gm205219483.333Jaculus_jaculus
ENSDARG00000045373pabpn110096.330ENSKMAG00000018748pabpn110095.708Kryptolebias_marmoratus
ENSDARG00000045373pabpn110097.414ENSLBEG00000027266pabpn110097.414Labrus_bergylta
ENSDARG00000045373pabpn18088.202ENSLACG00000000646pabpn18584.021Latimeria_chalumnae
ENSDARG00000045373pabpn19066.822ENSLOCG00000004694pabpn1l9966.822Lepisosteus_oculatus
ENSDARG00000045373pabpn19996.313ENSLOCG00000000796pabpn110093.333Lepisosteus_oculatus
ENSDARG00000045373pabpn16583.553ENSLAFG00000031227-10083.553Loxodonta_africana
ENSDARG00000045373pabpn19973.391ENSMFAG00000032183BCL2L2-PABPN19483.333Macaca_fascicularis
ENSDARG00000045373pabpn16175.352ENSMFAG00000031355-9975.352Macaca_fascicularis
ENSDARG00000045373pabpn19973.391ENSMMUG00000014747BCL2L2-PABPN110082.993Macaca_mulatta
ENSDARG00000045373pabpn18569.500ENSMMUG00000048382-8557.977Macaca_mulatta
ENSDARG00000045373pabpn19976.824ENSMNEG00000045065BCL2L2-PABPN18477.253Macaca_nemestrina
ENSDARG00000045373pabpn17969.519ENSMNEG00000035750-9975.352Macaca_nemestrina
ENSDARG00000045373pabpn19973.391ENSMLEG00000043862BCL2L2-PABPN19483.333Mandrillus_leucophaeus
ENSDARG00000045373pabpn17267.066ENSMLEG00000034623-9973.239Mandrillus_leucophaeus
ENSDARG00000045373pabpn110096.364ENSMAMG00000007979pabpn110095.423Mastacembelus_armatus
ENSDARG00000045373pabpn110097.273ENSMZEG00005011904pabpn110096.831Maylandia_zebra
ENSDARG00000045373pabpn19973.391ENSMAUG00000007383Gm205217082.775Mesocricetus_auratus
ENSDARG00000045373pabpn19977.253ENSMICG00000010002BCL2L2-PABPN18477.966Microcebus_murinus
ENSDARG00000045373pabpn19972.961ENSMOCG00000018557Gm205219091.837Microtus_ochrogaster
ENSDARG00000045373pabpn110097.845ENSMMOG00000005405pabpn110097.845Mola_mola
ENSDARG00000045373pabpn18580.829ENSMODG00000004535-8270.120Monodelphis_domestica
ENSDARG00000045373pabpn110097.273ENSMALG00000019612pabpn110095.775Monopterus_albus
ENSDARG00000045373pabpn19972.532MGP_CAROLIEiJ_G0019276Gm205217072.532Mus_caroli
ENSDARG00000045373pabpn18682.039MGP_CAROLIEiJ_G0019277Pabpn19983.436Mus_caroli
ENSDARG00000045373pabpn19972.961ENSMUSG00000092232Gm205217072.961Mus_musculus
ENSDARG00000045373pabpn18682.524ENSMUSG00000022194Pabpn19983.436Mus_musculus
ENSDARG00000045373pabpn19972.961MGP_PahariEiJ_G0030294Gm205217072.961Mus_pahari
ENSDARG00000045373pabpn18682.524MGP_PahariEiJ_G0030295Pabpn110092.857Mus_pahari
ENSDARG00000045373pabpn19972.961MGP_SPRETEiJ_G0020165Gm205217072.961Mus_spretus
ENSDARG00000045373pabpn18682.524MGP_SPRETEiJ_G0020166Pabpn19983.436Mus_spretus
ENSDARG00000045373pabpn17183.333ENSMPUG00000006775-9283.333Mustela_putorius_furo
ENSDARG00000045373pabpn18184.211ENSMLUG00000003800-10084.211Myotis_lucifugus
ENSDARG00000045373pabpn18482.323ENSMLUG00000028677-8574.153Myotis_lucifugus
ENSDARG00000045373pabpn18880.476ENSMLUG00000012452-6980.476Myotis_lucifugus
ENSDARG00000045373pabpn19973.820ENSNGAG00000019529Gm205217073.820Nannospalax_galili
ENSDARG00000045373pabpn110097.273ENSNBRG00000023955pabpn110097.727Neolamprologus_brichardi
ENSDARG00000045373pabpn16460.811ENSNLEG00000035292-9960.811Nomascus_leucogenys
ENSDARG00000045373pabpn18669.756ENSNLEG00000030598-7771.053Nomascus_leucogenys
ENSDARG00000045373pabpn19973.391ENSNLEG00000015007-7483.254Nomascus_leucogenys
ENSDARG00000045373pabpn19972.961ENSODEG00000002083BCL2L2-PABPN16882.775Octodon_degus
ENSDARG00000045373pabpn18674.384ENSODEG00000003739-8862.162Octodon_degus
ENSDARG00000045373pabpn17673.184ENSODEG00000011555-8972.024Octodon_degus
ENSDARG00000045373pabpn110097.273ENSONIG00000008112pabpn110096.479Oreochromis_niloticus
ENSDARG00000045373pabpn16385.034ENSOANG00000009218-10085.034Ornithorhynchus_anatinus
ENSDARG00000045373pabpn18683.010ENSOCUG00000016174PABPN17682.775Oryctolagus_cuniculus
ENSDARG00000045373pabpn110096.818ENSORLG00000027900pabpn110095.423Oryzias_latipes
ENSDARG00000045373pabpn110096.818ENSORLG00020004681pabpn110092.808Oryzias_latipes_hni
ENSDARG00000045373pabpn110096.983ENSORLG00015000018pabpn110096.983Oryzias_latipes_hsok
ENSDARG00000045373pabpn110096.774ENSOMEG00000016618pabpn110095.423Oryzias_melastigma
ENSDARG00000045373pabpn18683.495ENSOGAG00000008710PABPN18270.518Otolemur_garnettii
ENSDARG00000045373pabpn19973.391ENSOARG00000019336BCL2L2-PABPN16473.391Ovis_aries
ENSDARG00000045373pabpn19973.391ENSPPAG00000028984BCL2L2-PABPN19283.333Pan_paniscus
ENSDARG00000045373pabpn17168.072ENSPPAG00000039421-9368.072Pan_paniscus
ENSDARG00000045373pabpn18683.495ENSPPRG00000010567PABPN18270.518Panthera_pardus
ENSDARG00000045373pabpn17183.333ENSPTIG00000001063BCL2L2-PABPN19483.333Panthera_tigris_altaica
ENSDARG00000045373pabpn19976.824ENSPTRG00000006167BCL2L28477.253Pan_troglodytes
ENSDARG00000045373pabpn110063.948ENSPTRG00000047273-9360.317Pan_troglodytes
ENSDARG00000045373pabpn19976.824ENSPANG00000021100BCL2L2-PABPN18477.253Papio_anubis
ENSDARG00000045373pabpn18570.000ENSPANG00000023326-9976.056Papio_anubis
ENSDARG00000045373pabpn110092.308ENSPKIG00000018052pabpn110094.850Paramormyrops_kingsleyae
ENSDARG00000045373pabpn17570.732ENSPKIG00000008340pabpn1l8668.156Paramormyrops_kingsleyae
ENSDARG00000045373pabpn110099.078ENSPKIG00000008144-10096.831Paramormyrops_kingsleyae
ENSDARG00000045373pabpn16276.119ENSPSIG00000011959-9576.119Pelodiscus_sinensis
ENSDARG00000045373pabpn110097.727ENSPMGG00000022027pabpn110092.254Periophthalmus_magnuspinnatus
ENSDARG00000045373pabpn19973.391ENSPEMG00000008332Gm205218991.837Peromyscus_maniculatus_bairdii
ENSDARG00000045373pabpn18375.676ENSPMAG00000006212pabpn19964.898Petromyzon_marinus
ENSDARG00000045373pabpn18680.976ENSPCIG00000027751-8670.722Phascolarctos_cinereus
ENSDARG00000045373pabpn110093.590ENSPFOG00000010351pabpn19994.872Poecilia_formosa
ENSDARG00000045373pabpn110095.890ENSPLAG00000022696pabpn110095.455Poecilia_latipinna
ENSDARG00000045373pabpn110093.590ENSPMEG00000020856pabpn110094.872Poecilia_mexicana
ENSDARG00000045373pabpn110095.434ENSPREG00000011278pabpn110095.299Poecilia_reticulata
ENSDARG00000045373pabpn18583.505ENSPPYG00000005663PABPN18970.518Pongo_abelii
ENSDARG00000045373pabpn18370.312ENSPCAG00000005902PABPN18460.241Procavia_capensis
ENSDARG00000045373pabpn19977.253ENSPCOG00000028047BCL2L2-PABPN18477.966Propithecus_coquereli
ENSDARG00000045373pabpn18881.818ENSPVAG00000005270PABPN17179.545Pteropus_vampyrus
ENSDARG00000045373pabpn110097.414ENSPNYG00000013182pabpn110097.414Pundamilia_nyererei
ENSDARG00000045373pabpn110099.078ENSPNAG00000023526pabpn110098.276Pygocentrus_nattereri
ENSDARG00000045373pabpn18862.802ENSPNAG00000021666pabpn1l8470.175Pygocentrus_nattereri
ENSDARG00000045373pabpn18683.010ENSRNOG00000042195Pabpn16982.775Rattus_norvegicus
ENSDARG00000045373pabpn18872.249ENSRBIG00000042811-8671.770Rhinopithecus_bieti
ENSDARG00000045373pabpn18972.170ENSRBIG00000039547-8663.529Rhinopithecus_bieti
ENSDARG00000045373pabpn19972.851ENSRBIG00000040762BCL2L2-PABPN16872.851Rhinopithecus_bieti
ENSDARG00000045373pabpn18868.720ENSRROG00000036409-8359.176Rhinopithecus_roxellana
ENSDARG00000045373pabpn18872.947ENSRROG00000040409-7671.498Rhinopithecus_roxellana
ENSDARG00000045373pabpn19972.851ENSRROG00000045535BCL2L2-PABPN19483.333Rhinopithecus_roxellana
ENSDARG00000045373pabpn19969.512ENSSBOG00000026930BCL2L2-PABPN19283.333Saimiri_boliviensis_boliviensis
ENSDARG00000045373pabpn19962.185ENSSHAG00000007707-9958.824Sarcophilus_harrisii
ENSDARG00000045373pabpn18182.540ENSSHAG00000014841-8784.737Sarcophilus_harrisii
ENSDARG00000045373pabpn19595.631ENSSFOG00015012565pabpn110090.175Scleropages_formosus
ENSDARG00000045373pabpn110097.273ENSSFOG00015014718pabpn110096.983Scleropages_formosus
ENSDARG00000045373pabpn17863.314ENSSFOG00015015833pabpn1l8466.667Scleropages_formosus
ENSDARG00000045373pabpn110097.235ENSSMAG00000020157pabpn110096.983Scophthalmus_maximus
ENSDARG00000045373pabpn110097.273ENSSDUG00000020582pabpn110096.127Seriola_dumerili
ENSDARG00000045373pabpn110097.414ENSSLDG00000007118pabpn110097.414Seriola_lalandi_dorsalis
ENSDARG00000045373pabpn17183.929ENSSPUG00000018308-9483.929Sphenodon_punctatus
ENSDARG00000045373pabpn110096.567ENSSPAG00000021658pabpn110096.567Stegastes_partitus
ENSDARG00000045373pabpn19263.594ENSSSCG00000034805-7959.716Sus_scrofa
ENSDARG00000045373pabpn19973.391ENSSSCG00000002023PABPN18270.518Sus_scrofa
ENSDARG00000045373pabpn110095.690ENSTRUG00000023664pabpn110095.690Takifugu_rubripes
ENSDARG00000045373pabpn19195.025ENSTNIG00000005369pabpn19395.025Tetraodon_nigroviridis
ENSDARG00000045373pabpn18683.495ENSUAMG00000024460PABPN16883.254Ursus_americanus
ENSDARG00000045373pabpn19973.391ENSUMAG00000014288BCL2L2-PABPN17073.391Ursus_maritimus
ENSDARG00000045373pabpn19973.391ENSVVUG00000019912BCL2L2-PABPN17684.021Vulpes_vulpes
ENSDARG00000045373pabpn18485.204ENSXETG00000014597pabpn17381.944Xenopus_tropicalis
ENSDARG00000045373pabpn17386.628ENSXCOG00000005158pabpn19886.628Xiphophorus_couchianus
ENSDARG00000045373pabpn110095.726ENSXMAG00000006196pabpn110095.726Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:1904247positive regulation of polynucleotide adenylyltransferase activity-IEAProcess

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