EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000045562 (Gene tree)
Gene ID: 494060
Gene Symbol: pus1
Alias: wu:fb98h11|zgc:103516
Full Name: pseudouridine synthase 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5787 bases
Position: chr21:14826583-14832369
Accession: ZDB-GENE-041212-26
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000122503	PseudoU_synth_1	PF01416.20	4.1e-16	1	1
ENSDARP00000116690	PseudoU_synth_1	PF01416.20	2.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134687	-	881	-	ENSDARP00000116690	279 (aa)	-	F1R130
ENSDART00000144859	-	1539	-	ENSDARP00000122503	412 (aa)	-	F1QWW1

Gene Model

Click here to download ENSDARG00000045562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000045562's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000045562	pus1	95	68.561	ENSG00000177192	PUS1	94	65.833	Homo_sapiens
ENSDARG00000045562	pus1	97	77.206	ENSAPOG00000007254	pus1	99	67.703	Acanthochromis_polyacanthus
ENSDARG00000045562	pus1	99	65.108	ENSAMEG00000013715	PUS1	90	63.514	Ailuropoda_melanoleuca
ENSDARG00000045562	pus1	97	76.103	ENSACIG00000009169	pus1	100	66.905	Amphilophus_citrinellus
ENSDARG00000045562	pus1	97	77.206	ENSAOCG00000022207	pus1	99	67.943	Amphiprion_ocellaris
ENSDARG00000045562	pus1	97	77.206	ENSAPEG00000006039	pus1	99	71.026	Amphiprion_percula
ENSDARG00000045562	pus1	97	75.368	ENSATEG00000020688	pus1	98	68.638	Anabas_testudineus
ENSDARG00000045562	pus1	95	71.591	ENSACAG00000007367	PUS1	94	67.806	Anolis_carolinensis
ENSDARG00000045562	pus1	95	67.424	ENSANAG00000036192	PUS1	93	67.219	Aotus_nancymaae
ENSDARG00000045562	pus1	97	75.458	ENSACLG00000020868	pus1	99	66.029	Astatotilapia_calliptera
ENSDARG00000045562	pus1	97	82.657	ENSAMXG00000008710	pus1	87	78.667	Astyanax_mexicanus
ENSDARG00000045562	pus1	95	67.045	ENSBTAG00000012990	PUS1	86	66.181	Bos_taurus
ENSDARG00000045562	pus1	97	38.028	WBGene00004248	pus-1	83	37.714	Caenorhabditis_elegans
ENSDARG00000045562	pus1	91	66.798	ENSCJAG00000003720	PUS1	74	64.706	Callithrix_jacchus
ENSDARG00000045562	pus1	95	67.424	ENSCAFG00000006429	PUS1	92	58.663	Canis_familiaris
ENSDARG00000045562	pus1	95	67.424	ENSCAFG00020010737	PUS1	93	58.663	Canis_lupus_dingo
ENSDARG00000045562	pus1	95	66.667	ENSCHIG00000000487	PUS1	86	65.889	Capra_hircus
ENSDARG00000045562	pus1	93	68.846	ENSTSYG00000032605	PUS1	93	67.930	Carlito_syrichta
ENSDARG00000045562	pus1	93	68.846	ENSCAPG00000006421	PUS1	99	66.250	Cavia_aperea
ENSDARG00000045562	pus1	93	68.846	ENSCPOG00000001027	PUS1	81	66.472	Cavia_porcellus
ENSDARG00000045562	pus1	93	68.462	ENSCCAG00000015879	PUS1	84	68.092	Cebus_capucinus
ENSDARG00000045562	pus1	95	68.182	ENSCATG00000032870	PUS1	83	68.092	Cercocebus_atys
ENSDARG00000045562	pus1	93	68.077	ENSCLAG00000011689	PUS1	94	59.950	Chinchilla_lanigera
ENSDARG00000045562	pus1	95	67.803	ENSCSAG00000001879	PUS1	80	67.155	Chlorocebus_sabaeus
ENSDARG00000045562	pus1	96	68.657	ENSCPBG00000024715	PUS1	92	66.667	Chrysemys_picta_bellii
ENSDARG00000045562	pus1	96	45.149	ENSCING00000009426	-	87	45.092	Ciona_intestinalis
ENSDARG00000045562	pus1	97	42.435	ENSCSAVG00000003751	-	79	39.130	Ciona_savignyi
ENSDARG00000045562	pus1	95	59.551	ENSCANG00000035561	PUS1	83	60.586	Colobus_angolensis_palliatus
ENSDARG00000045562	pus1	99	66.547	ENSCGRG00001019592	Pus1	82	67.246	Cricetulus_griseus_chok1gshd
ENSDARG00000045562	pus1	99	66.547	ENSCGRG00000004048	Pus1	88	67.246	Cricetulus_griseus_crigri
ENSDARG00000045562	pus1	96	73.704	ENSCSEG00000003629	pus1	99	64.269	Cynoglossus_semilaevis
ENSDARG00000045562	pus1	97	75.735	ENSCVAG00000001265	pus1	99	66.024	Cyprinodon_variegatus
ENSDARG00000045562	pus1	98	64.234	ENSDNOG00000045576	PUS1	95	66.343	Dasypus_novemcinctus
ENSDARG00000045562	pus1	99	66.187	ENSDORG00000011455	Pus1	93	68.874	Dipodomys_ordii
ENSDARG00000045562	pus1	94	48.864	FBgn0038811	PUS1	83	45.797	Drosophila_melanogaster
ENSDARG00000045562	pus1	93	68.077	ENSETEG00000019160	PUS1	85	66.185	Echinops_telfairi
ENSDARG00000045562	pus1	94	43.509	ENSEBUG00000000368	-	64	44.348	Eptatretus_burgeri
ENSDARG00000045562	pus1	95	68.561	ENSEASG00005016535	PUS1	80	67.536	Equus_asinus_asinus
ENSDARG00000045562	pus1	98	67.153	ENSECAG00000006965	PUS1	87	67.536	Equus_caballus
ENSDARG00000045562	pus1	99	75.180	ENSELUG00000010424	pus1	99	71.465	Esox_lucius
ENSDARG00000045562	pus1	72	30.303	ENSELUG00000015945	pusl1	76	30.303	Esox_lucius
ENSDARG00000045562	pus1	95	68.939	ENSFCAG00000010780	PUS1	81	67.347	Felis_catus
ENSDARG00000045562	pus1	97	68.727	ENSFALG00000008273	PUS1	97	59.338	Ficedula_albicollis
ENSDARG00000045562	pus1	95	68.182	ENSFDAG00000012518	PUS1	89	63.934	Fukomys_damarensis
ENSDARG00000045562	pus1	97	75.368	ENSFHEG00000010504	pus1	88	69.657	Fundulus_heteroclitus
ENSDARG00000045562	pus1	95	71.321	ENSGMOG00000008143	pus1	94	68.320	Gadus_morhua
ENSDARG00000045562	pus1	95	69.434	ENSGALG00000002354	PUS1	84	67.246	Gallus_gallus
ENSDARG00000045562	pus1	97	75.735	ENSGAFG00000006578	pus1	92	68.146	Gambusia_affinis
ENSDARG00000045562	pus1	97	74.088	ENSGACG00000017566	pus1	98	68.653	Gasterosteus_aculeatus
ENSDARG00000045562	pus1	99	65.704	ENSGAGG00000016730	-	93	65.432	Gopherus_agassizii
ENSDARG00000045562	pus1	95	68.939	ENSGGOG00000009178	PUS1	81	68.750	Gorilla_gorilla
ENSDARG00000045562	pus1	97	75.458	ENSHBUG00000001316	pus1	99	66.029	Haplochromis_burtoni
ENSDARG00000045562	pus1	95	66.288	ENSHGLG00000016086	PUS1	93	62.983	Heterocephalus_glaber_female
ENSDARG00000045562	pus1	95	65.909	ENSHGLG00100019362	PUS1	93	62.707	Heterocephalus_glaber_male
ENSDARG00000045562	pus1	97	74.265	ENSHCOG00000014288	pus1	82	70.027	Hippocampus_comes
ENSDARG00000045562	pus1	97	80.515	ENSIPUG00000010387	pus1	90	78.212	Ictalurus_punctatus
ENSDARG00000045562	pus1	95	69.318	ENSSTOG00000011245	PUS1	81	67.347	Ictidomys_tridecemlineatus
ENSDARG00000045562	pus1	94	69.582	ENSJJAG00000000088	Pus1	81	67.544	Jaculus_jaculus
ENSDARG00000045562	pus1	97	73.529	ENSKMAG00000012702	pus1	89	69.452	Kryptolebias_marmoratus
ENSDARG00000045562	pus1	97	73.897	ENSLBEG00000002845	pus1	97	66.329	Labrus_bergylta
ENSDARG00000045562	pus1	93	55.385	ENSLACG00000016044	-	96	56.604	Latimeria_chalumnae
ENSDARG00000045562	pus1	96	67.910	ENSLACG00000018598	PUS1	94	64.116	Latimeria_chalumnae
ENSDARG00000045562	pus1	98	71.062	ENSLOCG00000006127	pus1	96	67.363	Lepisosteus_oculatus
ENSDARG00000045562	pus1	96	66.914	ENSLAFG00000028731	PUS1	94	66.954	Loxodonta_africana
ENSDARG00000045562	pus1	95	67.424	ENSMFAG00000041194	PUS1	85	66.862	Macaca_fascicularis
ENSDARG00000045562	pus1	95	67.803	ENSMMUG00000031463	PUS1	88	67.155	Macaca_mulatta
ENSDARG00000045562	pus1	95	67.803	ENSMNEG00000002814	PUS1	83	67.763	Macaca_nemestrina
ENSDARG00000045562	pus1	95	67.803	ENSMLEG00000043560	PUS1	93	67.881	Mandrillus_leucophaeus
ENSDARG00000045562	pus1	97	75.368	ENSMAMG00000007371	pus1	95	67.000	Mastacembelus_armatus
ENSDARG00000045562	pus1	97	75.458	ENSMZEG00005017746	pus1	99	66.029	Maylandia_zebra
ENSDARG00000045562	pus1	95	70.189	ENSMGAG00000001958	PUS1	98	67.601	Meleagris_gallopavo
ENSDARG00000045562	pus1	99	66.906	ENSMAUG00000001482	Pus1	82	67.536	Mesocricetus_auratus
ENSDARG00000045562	pus1	95	68.939	ENSMICG00000030980	PUS1	90	63.812	Microcebus_murinus
ENSDARG00000045562	pus1	99	67.626	ENSMOCG00000022311	Pus1	82	67.826	Microtus_ochrogaster
ENSDARG00000045562	pus1	97	74.908	ENSMMOG00000021022	pus1	98	68.063	Mola_mola
ENSDARG00000045562	pus1	94	67.816	ENSMODG00000015551	PUS1	80	64.820	Monodelphis_domestica
ENSDARG00000045562	pus1	97	76.103	ENSMALG00000013202	pus1	98	66.502	Monopterus_albus
ENSDARG00000045562	pus1	99	67.626	MGP_CAROLIEiJ_G0027551	Pus1	89	67.816	Mus_caroli
ENSDARG00000045562	pus1	99	67.626	ENSMUSG00000029507	Pus1	89	67.816	Mus_musculus
ENSDARG00000045562	pus1	99	67.266	MGP_PahariEiJ_G0024133	Pus1	89	67.529	Mus_pahari
ENSDARG00000045562	pus1	99	67.626	MGP_SPRETEiJ_G0028549	Pus1	89	67.816	Mus_spretus
ENSDARG00000045562	pus1	95	67.803	ENSMPUG00000002314	PUS1	82	68.615	Mustela_putorius_furo
ENSDARG00000045562	pus1	95	68.561	ENSMLUG00000015790	PUS1	95	64.928	Myotis_lucifugus
ENSDARG00000045562	pus1	99	66.906	ENSNGAG00000012976	Pus1	81	67.930	Nannospalax_galili
ENSDARG00000045562	pus1	97	75.458	ENSNBRG00000020502	pus1	98	70.745	Neolamprologus_brichardi
ENSDARG00000045562	pus1	95	67.803	ENSNLEG00000008505	PUS1	92	67.918	Nomascus_leucogenys
ENSDARG00000045562	pus1	78	66.359	ENSMEUG00000002825	PUS1	92	59.347	Notamacropus_eugenii
ENSDARG00000045562	pus1	79	64.706	ENSOPRG00000002701	-	91	57.061	Ochotona_princeps
ENSDARG00000045562	pus1	99	66.065	ENSODEG00000008248	PUS1	91	66.181	Octodon_degus
ENSDARG00000045562	pus1	97	75.824	ENSONIG00000003803	pus1	89	73.968	Oreochromis_niloticus
ENSDARG00000045562	pus1	96	69.776	ENSOANG00000010619	PUS1	89	63.824	Ornithorhynchus_anatinus
ENSDARG00000045562	pus1	93	68.462	ENSOCUG00000007310	PUS1	75	65.598	Oryctolagus_cuniculus
ENSDARG00000045562	pus1	96	76.667	ENSORLG00000010787	pus1	92	69.713	Oryzias_latipes
ENSDARG00000045562	pus1	96	77.407	ENSORLG00020011483	pus1	92	69.974	Oryzias_latipes_hni
ENSDARG00000045562	pus1	96	77.407	ENSORLG00015023012	pus1	98	69.974	Oryzias_latipes_hsok
ENSDARG00000045562	pus1	95	77.444	ENSOMEG00000022655	pus1	87	71.892	Oryzias_melastigma
ENSDARG00000045562	pus1	93	70.000	ENSOGAG00000008720	PUS1	94	64.641	Otolemur_garnettii
ENSDARG00000045562	pus1	95	66.288	ENSOARG00000013316	PUS1	79	65.598	Ovis_aries
ENSDARG00000045562	pus1	95	68.939	ENSPPAG00000040971	PUS1	81	68.750	Pan_paniscus
ENSDARG00000045562	pus1	95	68.939	ENSPPRG00000015456	PUS1	87	67.347	Panthera_pardus
ENSDARG00000045562	pus1	94	68.966	ENSPTIG00000004201	PUS1	89	67.347	Panthera_tigris_altaica
ENSDARG00000045562	pus1	94	68.821	ENSPTRG00000005643	PUS1	81	68.647	Pan_troglodytes
ENSDARG00000045562	pus1	94	67.681	ENSPANG00000000376	PUS1	83	67.657	Papio_anubis
ENSDARG00000045562	pus1	97	69.742	ENSPKIG00000019369	pus1	88	65.195	Paramormyrops_kingsleyae
ENSDARG00000045562	pus1	96	67.910	ENSPSIG00000016432	PUS1	85	65.110	Pelodiscus_sinensis
ENSDARG00000045562	pus1	96	74.349	ENSPMGG00000004522	pus1	95	70.845	Periophthalmus_magnuspinnatus
ENSDARG00000045562	pus1	99	66.906	ENSPEMG00000013448	Pus1	82	67.246	Peromyscus_maniculatus_bairdii
ENSDARG00000045562	pus1	94	54.753	ENSPMAG00000004636	pus1	99	57.492	Petromyzon_marinus
ENSDARG00000045562	pus1	96	65.169	ENSPCIG00000022609	-	63	66.415	Phascolarctos_cinereus
ENSDARG00000045562	pus1	97	75.368	ENSPFOG00000019669	pus1	100	63.270	Poecilia_formosa
ENSDARG00000045562	pus1	97	75.000	ENSPLAG00000007185	pus1	92	67.277	Poecilia_latipinna
ENSDARG00000045562	pus1	97	75.000	ENSPLAG00000002692	-	92	67.277	Poecilia_latipinna
ENSDARG00000045562	pus1	97	75.368	ENSPMEG00000011115	PUS1	100	63.270	Poecilia_mexicana
ENSDARG00000045562	pus1	97	75.368	ENSPMEG00000006038	pus1	95	67.539	Poecilia_mexicana
ENSDARG00000045562	pus1	97	75.368	ENSPREG00000007231	pus1	97	72.571	Poecilia_reticulata
ENSDARG00000045562	pus1	94	68.441	ENSPPYG00000005132	PUS1	83	66.857	Pongo_abelii
ENSDARG00000045562	pus1	90	65.476	ENSPCAG00000009110	-	61	65.476	Procavia_capensis
ENSDARG00000045562	pus1	93	60.769	ENSPCOG00000015595	PUS1	90	56.749	Propithecus_coquereli
ENSDARG00000045562	pus1	97	75.092	ENSPNYG00000013571	pus1	99	66.029	Pundamilia_nyererei
ENSDARG00000045562	pus1	97	80.812	ENSPNAG00000003938	pus1	98	71.429	Pygocentrus_nattereri
ENSDARG00000045562	pus1	99	67.266	ENSRNOG00000037500	Pus1	82	67.529	Rattus_norvegicus
ENSDARG00000045562	pus1	95	68.182	ENSRBIG00000043177	PUS1	85	68.092	Rhinopithecus_bieti
ENSDARG00000045562	pus1	95	67.803	ENSRROG00000039744	PUS1	82	68.100	Rhinopithecus_roxellana
ENSDARG00000045562	pus1	71	31.092	YGL063W	-	94	31.092	Saccharomyces_cerevisiae
ENSDARG00000045562	pus1	84	47.222	YPL212C	-	60	44.118	Saccharomyces_cerevisiae
ENSDARG00000045562	pus1	95	67.803	ENSSBOG00000023593	PUS1	92	64.486	Saimiri_boliviensis_boliviensis
ENSDARG00000045562	pus1	97	66.544	ENSSHAG00000013193	PUS1	86	66.102	Sarcophilus_harrisii
ENSDARG00000045562	pus1	98	72.527	ENSSFOG00015003463	pus1	87	68.750	Scleropages_formosus
ENSDARG00000045562	pus1	97	75.000	ENSSMAG00000019075	pus1	95	66.250	Scophthalmus_maximus
ENSDARG00000045562	pus1	97	76.838	ENSSDUG00000007102	pus1	94	69.114	Seriola_dumerili
ENSDARG00000045562	pus1	97	76.471	ENSSLDG00000022850	pus1	94	68.861	Seriola_lalandi_dorsalis
ENSDARG00000045562	pus1	81	64.602	ENSSARG00000008367	PUS1	99	57.792	Sorex_araneus
ENSDARG00000045562	pus1	95	69.811	ENSSPUG00000010009	PUS1	94	62.595	Sphenodon_punctatus
ENSDARG00000045562	pus1	97	75.735	ENSSPAG00000006272	pus1	99	69.231	Stegastes_partitus
ENSDARG00000045562	pus1	95	67.803	ENSSSCG00000009741	PUS1	86	67.055	Sus_scrofa
ENSDARG00000045562	pus1	95	72.453	ENSTGUG00000008068	PUS1	100	71.515	Taeniopygia_guttata
ENSDARG00000045562	pus1	96	74.170	ENSTRUG00000002198	pus1	94	69.231	Takifugu_rubripes
ENSDARG00000045562	pus1	96	72.694	ENSTNIG00000003942	pus1	91	70.028	Tetraodon_nigroviridis
ENSDARG00000045562	pus1	95	66.667	ENSTTRG00000000632	PUS1	81	65.306	Tursiops_truncatus
ENSDARG00000045562	pus1	99	65.468	ENSUAMG00000017197	PUS1	88	66.087	Ursus_americanus
ENSDARG00000045562	pus1	99	65.108	ENSUMAG00000002831	PUS1	95	68.354	Ursus_maritimus
ENSDARG00000045562	pus1	58	73.529	ENSVPAG00000009778	-	62	73.529	Vicugna_pacos
ENSDARG00000045562	pus1	95	67.424	ENSVVUG00000004199	PUS1	80	64.857	Vulpes_vulpes
ENSDARG00000045562	pus1	96	67.407	ENSXETG00000002030	pus1	92	65.574	Xenopus_tropicalis
ENSDARG00000045562	pus1	93	49.042	ENSXETG00000033640	-	99	49.216	Xenopus_tropicalis
ENSDARG00000045562	pus1	97	76.471	ENSXCOG00000004722	pus1	98	68.205	Xiphophorus_couchianus
ENSDARG00000045562	pus1	97	76.471	ENSXMAG00000000988	pus1	92	68.407	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0016853	isomerase activity	-	IEA	Function
GO:0031119	tRNA pseudouridine synthesis	21873635.	IBA	Process
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process