EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000045606 (Gene tree)
Gene ID: 792266
Gene Symbol: alkbh3
Alias: im:6900103|zgc:91935
Full Name: alkB homolog 3%2C alpha-ketoglutarate-dependent dioxygenase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 31159 bases
Position: chr25:30233638-30264796
Accession: ZDB-GENE-040801-254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000067056	2OG-FeII_Oxy_2	PF13532.6	2.3e-31	1	1
ENSDARP00000105012	2OG-FeII_Oxy_2	PF13532.6	2.3e-31	1	1
ENSDARP00000149194	2OG-FeII_Oxy_2	PF13532.6	2.3e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000145924	-	778	-	ENSDARP00000118854	181 (aa)	-	E9QHT7
ENSDART00000147327	-	541	-	ENSDARP00000116105	115 (aa)	-	E9QCL7
ENSDART00000123220	-	1209	-	ENSDARP00000105012	282 (aa)	-	F1QRD8
ENSDART00000148250	-	423	-	ENSDARP00000122157	91 (aa)	-	E9QHQ9
ENSDART00000067057	-	1475	XM_005163146	ENSDARP00000067056	282 (aa)	XP_005163203	F1QRD8
ENSDART00000192558	-	2871	XM_005163144	ENSDARP00000149194	282 (aa)	XP_005163201	F1QRD8

Gene Model

Click here to download ENSDARG00000045606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000045606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000045606	alkbh3	67	35.204	ENSDARG00000059856	alkbh2	74	35.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000045606	alkbh3	97	54.861	ENSG00000166199	ALKBH3	99	54.861	Homo_sapiens
ENSDARG00000045606	alkbh3	97	75.610	ENSAPOG00000008495	alkbh3	95	75.610	Acanthochromis_polyacanthus
ENSDARG00000045606	alkbh3	97	53.191	ENSAMEG00000004842	ALKBH3	95	53.521	Ailuropoda_melanoleuca
ENSDARG00000045606	alkbh3	96	75.000	ENSACIG00000011887	alkbh3	100	75.000	Amphilophus_citrinellus
ENSDARG00000045606	alkbh3	97	77.003	ENSAOCG00000023500	alkbh3	95	77.003	Amphiprion_ocellaris
ENSDARG00000045606	alkbh3	97	76.655	ENSAPEG00000011723	alkbh3	95	76.655	Amphiprion_percula
ENSDARG00000045606	alkbh3	97	74.912	ENSATEG00000021785	alkbh3	95	74.912	Anabas_testudineus
ENSDARG00000045606	alkbh3	97	41.806	ENSACAG00000000855	ALKBH3	99	42.193	Anolis_carolinensis
ENSDARG00000045606	alkbh3	97	55.245	ENSANAG00000033941	ALKBH3	99	55.245	Aotus_nancymaae
ENSDARG00000045606	alkbh3	99	74.315	ENSACLG00000023226	alkbh3	98	74.315	Astatotilapia_calliptera
ENSDARG00000045606	alkbh3	96	78.467	ENSAMXG00000037076	alkbh3	98	78.467	Astyanax_mexicanus
ENSDARG00000045606	alkbh3	97	55.124	ENSBTAG00000009518	ALKBH3	99	55.124	Bos_taurus
ENSDARG00000045606	alkbh3	97	55.052	ENSCJAG00000011353	ALKBH3	100	55.052	Callithrix_jacchus
ENSDARG00000045606	alkbh3	99	54.255	ENSCAFG00000006657	ALKBH3	99	54.255	Canis_familiaris
ENSDARG00000045606	alkbh3	99	52.962	ENSCAFG00020006841	ALKBH3	99	53.287	Canis_lupus_dingo
ENSDARG00000045606	alkbh3	97	54.770	ENSCHIG00000017579	ALKBH3	99	54.770	Capra_hircus
ENSDARG00000045606	alkbh3	97	55.477	ENSTSYG00000005498	ALKBH3	99	55.477	Carlito_syrichta
ENSDARG00000045606	alkbh3	97	53.710	ENSCAPG00000004995	ALKBH3	99	54.861	Cavia_aperea
ENSDARG00000045606	alkbh3	97	53.357	ENSCPOG00000005138	ALKBH3	99	54.386	Cavia_porcellus
ENSDARG00000045606	alkbh3	97	56.383	ENSCCAG00000036907	ALKBH3	99	56.383	Cebus_capucinus
ENSDARG00000045606	alkbh3	98	54.138	ENSCATG00000035646	ALKBH3	99	54.138	Cercocebus_atys
ENSDARG00000045606	alkbh3	97	55.363	ENSCLAG00000016579	ALKBH3	99	55.363	Chinchilla_lanigera
ENSDARG00000045606	alkbh3	98	54.007	ENSCSAG00000005539	ALKBH3	99	54.007	Chlorocebus_sabaeus
ENSDARG00000045606	alkbh3	97	55.245	ENSCHOG00000001407	ALKBH3	99	55.245	Choloepus_hoffmanni
ENSDARG00000045606	alkbh3	97	56.294	ENSCPBG00000012575	ALKBH3	99	56.294	Chrysemys_picta_bellii
ENSDARG00000045606	alkbh3	53	57.333	ENSCING00000007764	-	97	57.333	Ciona_intestinalis
ENSDARG00000045606	alkbh3	96	46.237	ENSCSAVG00000000783	-	99	46.237	Ciona_savignyi
ENSDARG00000045606	alkbh3	98	54.480	ENSCANG00000018698	ALKBH3	99	54.480	Colobus_angolensis_palliatus
ENSDARG00000045606	alkbh3	97	55.439	ENSCGRG00001014489	Alkbh3	99	55.439	Cricetulus_griseus_chok1gshd
ENSDARG00000045606	alkbh3	97	55.439	ENSCGRG00000017661	Alkbh3	99	55.439	Cricetulus_griseus_crigri
ENSDARG00000045606	alkbh3	97	75.801	ENSCSEG00000000814	alkbh3	95	75.801	Cynoglossus_semilaevis
ENSDARG00000045606	alkbh3	99	73.540	ENSCVAG00000009432	alkbh3	98	73.540	Cyprinodon_variegatus
ENSDARG00000045606	alkbh3	96	55.872	ENSDNOG00000036652	ALKBH3	98	55.872	Dasypus_novemcinctus
ENSDARG00000045606	alkbh3	97	53.472	ENSDORG00000000083	Alkbh3	99	54.386	Dipodomys_ordii
ENSDARG00000045606	alkbh3	97	54.064	ENSEASG00005014856	ALKBH3	96	54.770	Equus_asinus_asinus
ENSDARG00000045606	alkbh3	97	54.417	ENSECAG00000010673	ALKBH3	96	55.124	Equus_caballus
ENSDARG00000045606	alkbh3	76	40.708	ENSEEUG00000002183	ALKBH3	77	40.708	Erinaceus_europaeus
ENSDARG00000045606	alkbh3	99	61.592	ENSELUG00000003260	alkbh3	98	61.592	Esox_lucius
ENSDARG00000045606	alkbh3	97	54.386	ENSFCAG00000029461	ALKBH3	99	54.386	Felis_catus
ENSDARG00000045606	alkbh3	95	56.631	ENSFALG00000012361	ALKBH3	97	56.631	Ficedula_albicollis
ENSDARG00000045606	alkbh3	97	53.025	ENSFDAG00000012666	ALKBH3	98	53.310	Fukomys_damarensis
ENSDARG00000045606	alkbh3	97	75.618	ENSFHEG00000018735	alkbh3	95	75.618	Fundulus_heteroclitus
ENSDARG00000045606	alkbh3	97	69.123	ENSGMOG00000019146	alkbh3	96	69.123	Gadus_morhua
ENSDARG00000045606	alkbh3	83	61.803	ENSGALG00000041309	ALKBH3	60	61.803	Gallus_gallus
ENSDARG00000045606	alkbh3	97	73.944	ENSGAFG00000005814	alkbh3	95	73.944	Gambusia_affinis
ENSDARG00000045606	alkbh3	97	72.887	ENSGACG00000006950	alkbh3	98	71.223	Gasterosteus_aculeatus
ENSDARG00000045606	alkbh3	71	65.000	ENSGAGG00000013151	ALKBH3	98	65.000	Gopherus_agassizii
ENSDARG00000045606	alkbh3	97	54.874	ENSGGOG00000001931	ALKBH3	99	54.874	Gorilla_gorilla
ENSDARG00000045606	alkbh3	99	74.315	ENSHBUG00000008513	alkbh3	98	74.315	Haplochromis_burtoni
ENSDARG00000045606	alkbh3	97	54.480	ENSHGLG00000019437	ALKBH3	98	54.480	Heterocephalus_glaber_female
ENSDARG00000045606	alkbh3	97	49.462	ENSHGLG00100004468	ALKBH3	98	49.462	Heterocephalus_glaber_male
ENSDARG00000045606	alkbh3	98	73.646	ENSIPUG00000017036	alkbh3	99	73.646	Ictalurus_punctatus
ENSDARG00000045606	alkbh3	97	55.124	ENSSTOG00000006060	ALKBH3	100	55.124	Ictidomys_tridecemlineatus
ENSDARG00000045606	alkbh3	96	51.943	ENSJJAG00000018577	-	97	51.943	Jaculus_jaculus
ENSDARG00000045606	alkbh3	97	76.678	ENSKMAG00000006499	alkbh3	95	76.678	Kryptolebias_marmoratus
ENSDARG00000045606	alkbh3	99	71.972	ENSLBEG00000004226	alkbh3	98	71.972	Labrus_bergylta
ENSDARG00000045606	alkbh3	98	53.767	ENSLACG00000017208	ALKBH3	99	53.767	Latimeria_chalumnae
ENSDARG00000045606	alkbh3	97	66.304	ENSLOCG00000001237	alkbh3	100	66.304	Lepisosteus_oculatus
ENSDARG00000045606	alkbh3	97	56.184	ENSLAFG00000003441	ALKBH3	99	56.184	Loxodonta_africana
ENSDARG00000045606	alkbh3	98	53.793	ENSMFAG00000031334	ALKBH3	99	53.793	Macaca_fascicularis
ENSDARG00000045606	alkbh3	98	53.793	ENSMNEG00000042403	ALKBH3	99	53.793	Macaca_nemestrina
ENSDARG00000045606	alkbh3	98	54.480	ENSMLEG00000038324	ALKBH3	99	54.480	Mandrillus_leucophaeus
ENSDARG00000045606	alkbh3	97	75.352	ENSMAMG00000023051	alkbh3	95	75.352	Mastacembelus_armatus
ENSDARG00000045606	alkbh3	99	74.315	ENSMZEG00005011786	alkbh3	98	74.315	Maylandia_zebra
ENSDARG00000045606	alkbh3	78	57.273	ENSMGAG00000010479	ALKBH3	97	57.273	Meleagris_gallopavo
ENSDARG00000045606	alkbh3	97	56.537	ENSMAUG00000009317	Alkbh3	99	56.537	Mesocricetus_auratus
ENSDARG00000045606	alkbh3	97	55.052	ENSMICG00000014651	ALKBH3	99	55.052	Microcebus_murinus
ENSDARG00000045606	alkbh3	99	54.965	ENSMOCG00000012816	Alkbh3	99	54.965	Microtus_ochrogaster
ENSDARG00000045606	alkbh3	97	64.599	ENSMMOG00000020327	alkbh3	93	64.234	Mola_mola
ENSDARG00000045606	alkbh3	85	56.667	ENSMODG00000019863	-	96	56.667	Monodelphis_domestica
ENSDARG00000045606	alkbh3	100	71.959	ENSMALG00000017888	alkbh3	99	71.959	Monopterus_albus
ENSDARG00000045606	alkbh3	97	56.690	MGP_CAROLIEiJ_G0023995	Alkbh3	99	56.690	Mus_caroli
ENSDARG00000045606	alkbh3	97	55.634	ENSMUSG00000040174	Alkbh3	99	55.634	Mus_musculus
ENSDARG00000045606	alkbh3	98	55.245	MGP_PahariEiJ_G0025431	Alkbh3	99	55.245	Mus_pahari
ENSDARG00000045606	alkbh3	97	55.634	MGP_SPRETEiJ_G0024905	Alkbh3	99	55.634	Mus_spretus
ENSDARG00000045606	alkbh3	97	53.546	ENSMPUG00000006151	ALKBH3	98	54.610	Mustela_putorius_furo
ENSDARG00000045606	alkbh3	96	54.965	ENSMLUG00000029289	ALKBH3	98	54.965	Myotis_lucifugus
ENSDARG00000045606	alkbh3	97	54.770	ENSNGAG00000004591	Alkbh3	99	54.770	Nannospalax_galili
ENSDARG00000045606	alkbh3	99	64.539	ENSNBRG00000016311	alkbh3	98	64.539	Neolamprologus_brichardi
ENSDARG00000045606	alkbh3	97	55.596	ENSNLEG00000027521	ALKBH3	99	55.596	Nomascus_leucogenys
ENSDARG00000045606	alkbh3	73	63.285	ENSMEUG00000007604	ALKBH3	97	63.285	Notamacropus_eugenii
ENSDARG00000045606	alkbh3	97	55.282	ENSOPRG00000006771	ALKBH3	99	55.282	Ochotona_princeps
ENSDARG00000045606	alkbh3	97	54.386	ENSODEG00000017204	ALKBH3	99	54.737	Octodon_degus
ENSDARG00000045606	alkbh3	99	75.342	ENSONIG00000015605	alkbh3	99	75.000	Oreochromis_niloticus
ENSDARG00000045606	alkbh3	98	53.147	ENSOANG00000009208	ALKBH3	97	53.147	Ornithorhynchus_anatinus
ENSDARG00000045606	alkbh3	97	55.594	ENSOCUG00000016359	ALKBH3	99	55.594	Oryctolagus_cuniculus
ENSDARG00000045606	alkbh3	97	74.296	ENSORLG00000001437	alkbh3	95	74.296	Oryzias_latipes
ENSDARG00000045606	alkbh3	88	72.093	ENSORLG00020002409	alkbh3	96	72.093	Oryzias_latipes_hni
ENSDARG00000045606	alkbh3	97	73.944	ENSORLG00015016266	alkbh3	95	73.944	Oryzias_latipes_hsok
ENSDARG00000045606	alkbh3	97	73.239	ENSOMEG00000003835	alkbh3	95	73.239	Oryzias_melastigma
ENSDARG00000045606	alkbh3	97	54.770	ENSOGAG00000009107	ALKBH3	96	54.770	Otolemur_garnettii
ENSDARG00000045606	alkbh3	97	55.124	ENSOARG00000001123	ALKBH3	99	55.124	Ovis_aries
ENSDARG00000045606	alkbh3	97	55.235	ENSPPAG00000028729	ALKBH3	99	55.235	Pan_paniscus
ENSDARG00000045606	alkbh3	97	54.035	ENSPPRG00000005278	ALKBH3	99	54.035	Panthera_pardus
ENSDARG00000045606	alkbh3	97	53.333	ENSPTIG00000019393	ALKBH3	99	53.333	Panthera_tigris_altaica
ENSDARG00000045606	alkbh3	97	55.235	ENSPTRG00000003523	ALKBH3	99	55.235	Pan_troglodytes
ENSDARG00000045606	alkbh3	98	52.613	ENSPANG00000003104	ALKBH3	99	52.613	Papio_anubis
ENSDARG00000045606	alkbh3	98	75.445	ENSPKIG00000021815	alkbh3	96	75.445	Paramormyrops_kingsleyae
ENSDARG00000045606	alkbh3	78	50.435	ENSPSIG00000011933	ALKBH3	96	50.435	Pelodiscus_sinensis
ENSDARG00000045606	alkbh3	97	64.130	ENSPMGG00000008862	alkbh3	92	64.130	Periophthalmus_magnuspinnatus
ENSDARG00000045606	alkbh3	97	55.477	ENSPEMG00000019372	Alkbh3	99	55.903	Peromyscus_maniculatus_bairdii
ENSDARG00000045606	alkbh3	87	54.545	ENSPMAG00000001119	alkbh3	99	54.545	Petromyzon_marinus
ENSDARG00000045606	alkbh3	97	55.477	ENSPCIG00000021794	ALKBH3	97	55.477	Phascolarctos_cinereus
ENSDARG00000045606	alkbh3	97	74.296	ENSPFOG00000002705	alkbh3	95	74.296	Poecilia_formosa
ENSDARG00000045606	alkbh3	97	74.648	ENSPLAG00000002355	alkbh3	95	74.648	Poecilia_latipinna
ENSDARG00000045606	alkbh3	97	73.944	ENSPMEG00000004476	alkbh3	95	73.944	Poecilia_mexicana
ENSDARG00000045606	alkbh3	97	73.592	ENSPREG00000005505	alkbh3	90	73.592	Poecilia_reticulata
ENSDARG00000045606	alkbh3	96	55.245	ENSPPYG00000003342	ALKBH3	95	55.245	Pongo_abelii
ENSDARG00000045606	alkbh3	97	53.571	ENSPCAG00000002955	ALKBH3	99	53.571	Procavia_capensis
ENSDARG00000045606	alkbh3	97	54.704	ENSPCOG00000020139	ALKBH3	99	54.704	Propithecus_coquereli
ENSDARG00000045606	alkbh3	97	54.930	ENSPVAG00000011569	ALKBH3	99	54.930	Pteropus_vampyrus
ENSDARG00000045606	alkbh3	99	74.315	ENSPNYG00000010362	alkbh3	98	74.315	Pundamilia_nyererei
ENSDARG00000045606	alkbh3	98	75.725	ENSPNAG00000015943	alkbh3	96	75.725	Pygocentrus_nattereri
ENSDARG00000045606	alkbh3	99	55.052	ENSRNOG00000021678	Alkbh3	97	55.052	Rattus_norvegicus
ENSDARG00000045606	alkbh3	98	54.480	ENSRBIG00000034161	ALKBH3	99	54.480	Rhinopithecus_bieti
ENSDARG00000045606	alkbh3	98	54.839	ENSRROG00000042173	ALKBH3	99	54.839	Rhinopithecus_roxellana
ENSDARG00000045606	alkbh3	97	55.245	ENSSBOG00000023947	ALKBH3	99	55.245	Saimiri_boliviensis_boliviensis
ENSDARG00000045606	alkbh3	97	52.962	ENSSHAG00000006189	ALKBH3	97	52.962	Sarcophilus_harrisii
ENSDARG00000045606	alkbh3	99	73.592	ENSSFOG00015003566	alkbh3	100	73.592	Scleropages_formosus
ENSDARG00000045606	alkbh3	97	73.958	ENSSMAG00000004404	alkbh3	95	73.958	Scophthalmus_maximus
ENSDARG00000045606	alkbh3	97	76.056	ENSSDUG00000000513	alkbh3	95	76.056	Seriola_dumerili
ENSDARG00000045606	alkbh3	97	75.352	ENSSLDG00000003080	alkbh3	95	75.352	Seriola_lalandi_dorsalis
ENSDARG00000045606	alkbh3	96	56.338	ENSSPUG00000005861	ALKBH3	98	56.338	Sphenodon_punctatus
ENSDARG00000045606	alkbh3	97	73.793	ENSSPAG00000020713	alkbh3	94	73.793	Stegastes_partitus
ENSDARG00000045606	alkbh3	97	54.861	ENSSSCG00000040937	ALKBH3	99	54.861	Sus_scrofa
ENSDARG00000045606	alkbh3	82	58.621	ENSTGUG00000010222	ALKBH3	93	58.621	Taeniopygia_guttata
ENSDARG00000045606	alkbh3	99	64.948	ENSTRUG00000021459	alkbh3	88	64.948	Takifugu_rubripes
ENSDARG00000045606	alkbh3	99	68.750	ENSTNIG00000010385	alkbh3	98	68.750	Tetraodon_nigroviridis
ENSDARG00000045606	alkbh3	97	53.901	ENSTBEG00000016697	ALKBH3	99	53.901	Tupaia_belangeri
ENSDARG00000045606	alkbh3	97	54.417	ENSTTRG00000005121	ALKBH3	99	54.417	Tursiops_truncatus
ENSDARG00000045606	alkbh3	97	51.761	ENSUAMG00000025129	ALKBH3	94	58.874	Ursus_americanus
ENSDARG00000045606	alkbh3	97	53.191	ENSUMAG00000015602	ALKBH3	99	52.921	Ursus_maritimus
ENSDARG00000045606	alkbh3	97	53.873	ENSVPAG00000000215	ALKBH3	99	53.873	Vicugna_pacos
ENSDARG00000045606	alkbh3	99	52.962	ENSVVUG00000017283	ALKBH3	99	53.287	Vulpes_vulpes
ENSDARG00000045606	alkbh3	97	49.104	ENSXETG00000022230	alkbh3	99	49.104	Xenopus_tropicalis
ENSDARG00000045606	alkbh3	60	80.357	ENSXCOG00000000737	alkbh3	65	80.357	Xiphophorus_couchianus
ENSDARG00000045606	alkbh3	97	74.468	ENSXMAG00000013123	alkbh3	95	74.468	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006307	DNA dealkylation involved in DNA repair	21873635.	IBA	Process
GO:0006307	DNA dealkylation involved in DNA repair	-	IEA	Process
GO:0008198	ferrous iron binding	21873635.	IBA	Function
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0035552	oxidative single-stranded DNA demethylation	21873635.	IBA	Process
GO:0035552	oxidative single-stranded DNA demethylation	-	IEA	Process
GO:0035553	oxidative single-stranded RNA demethylation	21873635.	IBA	Process
GO:0043734	DNA-N1-methyladenine dioxygenase activity	21873635.	IBA	Function
GO:0051213	dioxygenase activity	-	IEA	Function
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:1990930	RNA N1-methyladenosine dioxygenase activity	21873635.	IBA	Function