EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000051931 (Gene tree)
Gene ID
504054
Gene Symbol
edc3
Alias
im:7151288|lsm16|wu:fb82d07|yjdc|zgc:112006
Full Name
enhancer of mRNA decapping 3 homolog (S. cerevisiae)
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
23338 bases
Position
chr25:20668272-20691609
Accession
ZDB-GENE-050522-287
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000067372FDFPF09532.106.5e-1111
ENSDARP00000155469FDFPF09532.106.5e-1111
ENSDARP00000067372LSM14PF12701.73e-1211
ENSDARP00000155469LSM14PF12701.73e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000186942-6620-ENSDARP00000155469506 (aa)-F1QL27
ENSDART00000158130-646--- (aa)--
ENSDART00000067373-4258XM_005163053ENSDARP00000067372506 (aa)XP_005163110F1QL27
Gene Model
Click here to download ENSDARG00000051931's gene model file
Pathways
Pathway IDPathway NameSource
dre03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000051931's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000051931edc39969.006ENSG00000179151EDC310077.576Homo_sapiens
ENSDARG00000051931edc39977.030ENSAPOG00000010791edc39977.030Acanthochromis_polyacanthus
ENSDARG00000051931edc39957.760ENSAPOG00000008655EDC39957.760Acanthochromis_polyacanthus
ENSDARG00000051931edc39969.006ENSAMEG00000008963EDC39968.627Ailuropoda_melanoleuca
ENSDARG00000051931edc39976.634ENSACIG00000017751edc39976.634Amphilophus_citrinellus
ENSDARG00000051931edc39962.500ENSACIG00000005330EDC39961.673Amphilophus_citrinellus
ENSDARG00000051931edc39961.220ENSAOCG00000009103-9961.220Amphiprion_ocellaris
ENSDARG00000051931edc39976.832ENSAOCG00000005431edc39976.832Amphiprion_ocellaris
ENSDARG00000051931edc39976.832ENSAPEG00000000968edc39976.832Amphiprion_percula
ENSDARG00000051931edc39960.904ENSAPEG00000007841EDC39961.417Amphiprion_percula
ENSDARG00000051931edc39961.089ENSATEG00000004205-9961.328Anabas_testudineus
ENSDARG00000051931edc39977.822ENSATEG00000015505edc39977.822Anabas_testudineus
ENSDARG00000051931edc38969.365ENSAPLG00000008957EDC39968.928Anas_platyrhynchos
ENSDARG00000051931edc37866.000ENSACAG00000000460-10066.000Anolis_carolinensis
ENSDARG00000051931edc39968.811ENSANAG00000024078EDC39968.555Aotus_nancymaae
ENSDARG00000051931edc39977.030ENSACLG00000007232edc39977.030Astatotilapia_calliptera
ENSDARG00000051931edc39962.672ENSACLG00000018776-9962.672Astatotilapia_calliptera
ENSDARG00000051931edc39985.347ENSAMXG00000001589edc39985.347Astyanax_mexicanus
ENSDARG00000051931edc39969.216ENSBTAG00000007308EDC39968.824Bos_taurus
ENSDARG00000051931edc39968.811ENSCJAG00000017681EDC39968.431Callithrix_jacchus
ENSDARG00000051931edc39968.616ENSCAFG00000017935EDC39968.039Canis_familiaris
ENSDARG00000051931edc39968.616ENSCAFG00020003909EDC39968.039Canis_lupus_dingo
ENSDARG00000051931edc39969.216ENSCHIG00000023658EDC39968.824Capra_hircus
ENSDARG00000051931edc39969.216ENSTSYG00000004822EDC39969.216Carlito_syrichta
ENSDARG00000051931edc39969.216ENSCPOG00000015595EDC39969.216Cavia_porcellus
ENSDARG00000051931edc39969.006ENSCCAG00000021663EDC39968.627Cebus_capucinus
ENSDARG00000051931edc39969.006ENSCATG00000037511EDC39969.006Cercocebus_atys
ENSDARG00000051931edc39969.216ENSCLAG00000005700EDC39969.216Chinchilla_lanigera
ENSDARG00000051931edc39969.006ENSCSAG00000014239EDC39969.006Chlorocebus_sabaeus
ENSDARG00000051931edc39969.727ENSCPBG00000024239EDC39969.727Chrysemys_picta_bellii
ENSDARG00000051931edc39939.197ENSCING00000022142-9939.197Ciona_intestinalis
ENSDARG00000051931edc39969.006ENSCANG00000028699EDC39969.006Colobus_angolensis_palliatus
ENSDARG00000051931edc39969.020ENSCGRG00001013874Edc39969.020Cricetulus_griseus_chok1gshd
ENSDARG00000051931edc39969.020ENSCGRG00000011885Edc39969.020Cricetulus_griseus_crigri
ENSDARG00000051931edc39976.238ENSCSEG00000012996edc39976.238Cynoglossus_semilaevis
ENSDARG00000051931edc39974.851ENSCVAG00000008023edc39974.851Cyprinodon_variegatus
ENSDARG00000051931edc39961.776ENSDNOG00000030661EDC39961.776Dasypus_novemcinctus
ENSDARG00000051931edc36577.064ENSETEG00000002398-6477.064Echinops_telfairi
ENSDARG00000051931edc39968.616ENSEASG00005005071EDC39968.235Equus_asinus_asinus
ENSDARG00000051931edc39968.616ENSECAG00000017994EDC39968.235Equus_caballus
ENSDARG00000051931edc39971.992ENSELUG00000005794edc39971.992Esox_lucius
ENSDARG00000051931edc39967.383ENSELUG00000007607EDC39967.255Esox_lucius
ENSDARG00000051931edc39968.811ENSFCAG00000002014EDC39968.431Felis_catus
ENSDARG00000051931edc39868.327ENSFALG00000004543EDC39668.327Ficedula_albicollis
ENSDARG00000051931edc39968.431ENSFDAG00000012582EDC39968.431Fukomys_damarensis
ENSDARG00000051931edc39975.446ENSFHEG00000009375edc39975.446Fundulus_heteroclitus
ENSDARG00000051931edc39976.680ENSGMOG00000002715edc39976.680Gadus_morhua
ENSDARG00000051931edc39969.804ENSGALG00000040181EDC39969.608Gallus_gallus
ENSDARG00000051931edc39975.248ENSGAFG00000014433edc39975.644Gambusia_affinis
ENSDARG00000051931edc39975.446ENSGACG00000009783edc39975.050Gasterosteus_aculeatus
ENSDARG00000051931edc39963.922ENSGACG00000014671EDC39963.922Gasterosteus_aculeatus
ENSDARG00000051931edc39969.804ENSGAGG00000023477EDC39969.804Gopherus_agassizii
ENSDARG00000051931edc39969.006ENSGGOG00000003552EDC39968.359Gorilla_gorilla
ENSDARG00000051931edc39977.030ENSHBUG00000003635edc39977.030Haplochromis_burtoni
ENSDARG00000051931edc39962.868ENSHBUG00000020817EDC39962.868Haplochromis_burtoni
ENSDARG00000051931edc39974.704ENSHCOG00000016834edc39975.099Hippocampus_comes
ENSDARG00000051931edc39983.366ENSIPUG00000005695edc310083.168Ictalurus_punctatus
ENSDARG00000051931edc39969.006ENSSTOG00000013936EDC39969.006Ictidomys_tridecemlineatus
ENSDARG00000051931edc39969.020ENSJJAG00000008074Edc39968.627Jaculus_jaculus
ENSDARG00000051931edc39959.496ENSKMAG00000001987EDC39959.496Kryptolebias_marmoratus
ENSDARG00000051931edc39976.238ENSKMAG00000001243edc39976.238Kryptolebias_marmoratus
ENSDARG00000051931edc39976.040ENSLBEG00000013435edc39976.634Labrus_bergylta
ENSDARG00000051931edc39960.819ENSLBEG00000017984EDC39960.980Labrus_bergylta
ENSDARG00000051931edc39970.543ENSLACG00000014149EDC39970.543Latimeria_chalumnae
ENSDARG00000051931edc39972.277ENSLOCG00000014625edc39972.475Lepisosteus_oculatus
ENSDARG00000051931edc39969.352ENSLAFG00000002992EDC39969.352Loxodonta_africana
ENSDARG00000051931edc39969.006ENSMFAG00000043074EDC39968.555Macaca_fascicularis
ENSDARG00000051931edc39969.006ENSMMUG00000011071EDC39968.555Macaca_mulatta
ENSDARG00000051931edc39969.006ENSMNEG00000035316EDC39968.555Macaca_nemestrina
ENSDARG00000051931edc39969.006ENSMLEG00000030372EDC39969.006Mandrillus_leucophaeus
ENSDARG00000051931edc39960.433ENSMAMG00000005423-9960.433Mastacembelus_armatus
ENSDARG00000051931edc39977.228ENSMAMG00000000505edc39977.228Mastacembelus_armatus
ENSDARG00000051931edc39962.868ENSMZEG00005005654EDC39962.868Maylandia_zebra
ENSDARG00000051931edc39976.832ENSMZEG00005004892edc39976.832Maylandia_zebra
ENSDARG00000051931edc39969.608ENSMGAG00000002617EDC39969.412Meleagris_gallopavo
ENSDARG00000051931edc39968.811ENSMICG00000043190EDC39968.627Microcebus_murinus
ENSDARG00000051931edc39968.431ENSMOCG00000016205Edc39968.431Microtus_ochrogaster
ENSDARG00000051931edc39977.426ENSMMOG00000012278edc39977.624Mola_mola
ENSDARG00000051931edc39969.531ENSMODG00000009442EDC39969.141Monodelphis_domestica
ENSDARG00000051931edc39976.832ENSMALG00000008658edc39976.832Monopterus_albus
ENSDARG00000051931edc39968.431MGP_CAROLIEiJ_G0032280Edc310072.308Mus_caroli
ENSDARG00000051931edc39968.235ENSMUSG00000038957Edc310072.308Mus_musculus
ENSDARG00000051931edc39968.431MGP_PahariEiJ_G0015146Edc310072.308Mus_pahari
ENSDARG00000051931edc39968.164MGP_SPRETEiJ_G0033420Edc310072.308Mus_spretus
ENSDARG00000051931edc39968.824ENSMPUG00000017293EDC39968.235Mustela_putorius_furo
ENSDARG00000051931edc39968.738ENSMLUG00000016382EDC39968.359Myotis_lucifugus
ENSDARG00000051931edc39968.616ENSNGAG00000010923Edc39968.164Nannospalax_galili
ENSDARG00000051931edc39976.832ENSNBRG00000002434edc39976.832Neolamprologus_brichardi
ENSDARG00000051931edc39962.475ENSNBRG00000007881EDC39962.868Neolamprologus_brichardi
ENSDARG00000051931edc39960.234ENSNLEG00000014577EDC39959.804Nomascus_leucogenys
ENSDARG00000051931edc39969.608ENSMEUG00000009077EDC39969.412Notamacropus_eugenii
ENSDARG00000051931edc37974.074ENSOPRG00000009540-7874.074Ochotona_princeps
ENSDARG00000051931edc39977.228ENSONIG00000008434edc39977.228Oreochromis_niloticus
ENSDARG00000051931edc39963.107ENSONIG00000002932-9962.984Oreochromis_niloticus
ENSDARG00000051931edc37866.915ENSOCUG00000017740EDC38666.915Oryctolagus_cuniculus
ENSDARG00000051931edc39960.707ENSORLG00000014399-9860.511Oryzias_latipes
ENSDARG00000051931edc39974.653ENSORLG00000004883edc39974.653Oryzias_latipes
ENSDARG00000051931edc39960.707ENSORLG00020019446-9960.511Oryzias_latipes_hni
ENSDARG00000051931edc39974.851ENSORLG00020012262edc39974.851Oryzias_latipes_hni
ENSDARG00000051931edc39960.904ENSORLG00015017635-9560.511Oryzias_latipes_hsok
ENSDARG00000051931edc39974.851ENSORLG00015005634edc39974.851Oryzias_latipes_hsok
ENSDARG00000051931edc39959.961ENSOMEG00000017354EDC39958.777Oryzias_melastigma
ENSDARG00000051931edc39975.644ENSOMEG00000014026edc39975.446Oryzias_melastigma
ENSDARG00000051931edc39969.020ENSOGAG00000014441EDC39968.824Otolemur_garnettii
ENSDARG00000051931edc39968.493ENSOARG00000003476EDC39968.493Ovis_aries
ENSDARG00000051931edc39969.006ENSPPAG00000040143EDC39968.359Pan_paniscus
ENSDARG00000051931edc39969.006ENSPPRG00000006257EDC39969.006Panthera_pardus
ENSDARG00000051931edc39969.006ENSPTIG00000017424EDC39969.006Panthera_tigris_altaica
ENSDARG00000051931edc39969.006ENSPTRG00000007279EDC39968.359Pan_troglodytes
ENSDARG00000051931edc39969.006ENSPANG00000015997EDC39969.006Papio_anubis
ENSDARG00000051931edc39973.228ENSPKIG00000019810EDC39973.031Paramormyrops_kingsleyae
ENSDARG00000051931edc39975.342ENSPKIG00000004416edc39975.342Paramormyrops_kingsleyae
ENSDARG00000051931edc39964.272ENSPSIG00000008474EDC39964.272Pelodiscus_sinensis
ENSDARG00000051931edc39976.087ENSPMGG00000007223edc39976.087Periophthalmus_magnuspinnatus
ENSDARG00000051931edc39968.811ENSPEMG00000015260Edc39968.811Peromyscus_maniculatus_bairdii
ENSDARG00000051931edc39969.020ENSPCIG00000006276EDC37068.824Phascolarctos_cinereus
ENSDARG00000051931edc39976.436ENSPFOG00000012204edc39976.634Poecilia_formosa
ENSDARG00000051931edc39976.436ENSPLAG00000014420edc39976.634Poecilia_latipinna
ENSDARG00000051931edc39976.436ENSPMEG00000023289edc39976.634Poecilia_mexicana
ENSDARG00000051931edc39975.842ENSPREG00000016022edc39975.842Poecilia_reticulata
ENSDARG00000051931edc39968.226ENSPPYG00000006642EDC39967.578Pongo_abelii
ENSDARG00000051931edc38874.112ENSPCAG00000002802EDC38774.112Procavia_capensis
ENSDARG00000051931edc39969.020ENSPCOG00000013364EDC39969.020Propithecus_coquereli
ENSDARG00000051931edc39969.020ENSPVAG00000014733EDC39969.020Pteropus_vampyrus
ENSDARG00000051931edc39962.868ENSPNYG00000009669EDC39962.868Pundamilia_nyererei
ENSDARG00000051931edc39977.030ENSPNYG00000021797edc39977.030Pundamilia_nyererei
ENSDARG00000051931edc39985.347ENSPNAG00000019657edc39985.347Pygocentrus_nattereri
ENSDARG00000051931edc39967.906ENSRNOG00000019579Edc39968.110Rattus_norvegicus
ENSDARG00000051931edc39969.006ENSRBIG00000019488EDC39968.750Rhinopithecus_bieti
ENSDARG00000051931edc39969.006ENSRROG00000034959EDC39968.750Rhinopithecus_roxellana
ENSDARG00000051931edc39969.216ENSSBOG00000004896EDC39968.750Saimiri_boliviensis_boliviensis
ENSDARG00000051931edc39668.496ENSSHAG00000015075EDC39568.293Sarcophilus_harrisii
ENSDARG00000051931edc39978.304ENSSFOG00015016939edc39978.698Scleropages_formosus
ENSDARG00000051931edc39971.063ENSSFOG00015002439edc39971.063Scleropages_formosus
ENSDARG00000051931edc39975.842ENSSMAG00000010695edc39976.634Scophthalmus_maximus
ENSDARG00000051931edc310061.886ENSSMAG00000010176-10061.961Scophthalmus_maximus
ENSDARG00000051931edc39964.694ENSSDUG00000007671EDC39964.047Seriola_dumerili
ENSDARG00000051931edc39977.426ENSSDUG00000021844edc39978.020Seriola_dumerili
ENSDARG00000051931edc39977.624ENSSLDG00000022046edc39978.218Seriola_lalandi_dorsalis
ENSDARG00000051931edc38079.352ENSSARG00000003907EDC38079.352Sorex_araneus
ENSDARG00000051931edc39968.359ENSSPUG00000008232EDC39968.359Sphenodon_punctatus
ENSDARG00000051931edc39977.228ENSSPAG00000010009edc39977.228Stegastes_partitus
ENSDARG00000051931edc39961.176ENSSPAG00000020327EDC39961.176Stegastes_partitus
ENSDARG00000051931edc39968.555ENSSSCG00000001903EDC39968.627Sus_scrofa
ENSDARG00000051931edc39970.196ENSTGUG00000004007EDC39970.196Taeniopygia_guttata
ENSDARG00000051931edc39976.436ENSTRUG00000017078edc39977.030Takifugu_rubripes
ENSDARG00000051931edc39976.331ENSTNIG00000016047edc39976.331Tetraodon_nigroviridis
ENSDARG00000051931edc39969.141ENSTTRG00000007990EDC39968.762Tursiops_truncatus
ENSDARG00000051931edc39969.006ENSUAMG00000026710-9968.627Ursus_americanus
ENSDARG00000051931edc39969.006ENSUMAG00000005006EDC39568.627Ursus_maritimus
ENSDARG00000051931edc37965.517ENSVPAG00000003499-7865.517Vicugna_pacos
ENSDARG00000051931edc39968.616ENSVVUG00000018601EDC39968.235Vulpes_vulpes
ENSDARG00000051931edc36974.000ENSXETG00000010622edc39975.143Xenopus_tropicalis
ENSDARG00000051931edc39976.238ENSXMAG00000007377edc39976.238Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body21873635.IBAComponent
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0003729mRNA binding-IEAFunction
GO:0005737cytoplasm-IEAComponent
GO:0031087deadenylation-independent decapping of nuclear-transcribed mRNA21873635.IBAProcess
GO:0031087deadenylation-independent decapping of nuclear-transcribed mRNA-IEAProcess
GO:0033962cytoplasmic mRNA processing body assembly21873635.IBAProcess
GO:1990174phosphodiesterase decapping endonuclease activity-ISSFunction

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