EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000051953 (Gene tree)
Gene ID: 492769
Gene Symbol: ythdc1
Alias: zgc:101592
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 24680 bases
Position: chr5:69878693-69903372
Accession: ZDB-GENE-041114-114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000068161	YTH	PF04146.15	6.1e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140562	-	660	-	-	- (aa)	-	-
ENSDART00000073671	-	2578	XM_009302042	ENSDARP00000068161	679 (aa)	XP_009300317	B8JMA3
ENSDART00000145590	-	674	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000051953's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000051953's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000051953	ythdc1	58	78.378	ENSG00000083896	YTHDC1	85	83.750	Homo_sapiens
ENSDARG00000051953	ythdc1	58	64.750	ENSAPOG00000013997	ythdc1	93	59.091	Acanthochromis_polyacanthus
ENSDARG00000051953	ythdc1	58	78.588	ENSAMEG00000005688	YTHDC1	93	63.716	Ailuropoda_melanoleuca
ENSDARG00000051953	ythdc1	58	65.347	ENSACIG00000019728	ythdc1	93	57.233	Amphilophus_citrinellus
ENSDARG00000051953	ythdc1	92	57.734	ENSAOCG00000000239	ythdc1	94	62.058	Amphiprion_ocellaris
ENSDARG00000051953	ythdc1	83	60.345	ENSAPEG00000000618	ythdc1	88	62.847	Amphiprion_percula
ENSDARG00000051953	ythdc1	82	63.542	ENSATEG00000023007	ythdc1	91	65.278	Anabas_testudineus
ENSDARG00000051953	ythdc1	91	65.211	ENSAPLG00000009921	YTHDC1	92	64.545	Anas_platyrhynchos
ENSDARG00000051953	ythdc1	92	62.649	ENSACAG00000009697	YTHDC1	93	61.848	Anolis_carolinensis
ENSDARG00000051953	ythdc1	58	78.378	ENSANAG00000001522	YTHDC1	93	63.703	Aotus_nancymaae
ENSDARG00000051953	ythdc1	92	59.119	ENSACLG00000019371	ythdc1	94	63.470	Astatotilapia_calliptera
ENSDARG00000051953	ythdc1	92	85.127	ENSAMXG00000006978	ythdc1	92	86.076	Astyanax_mexicanus
ENSDARG00000051953	ythdc1	58	77.647	ENSBTAG00000015572	YTHDC1	93	63.028	Bos_taurus
ENSDARG00000051953	ythdc1	58	78.378	ENSCJAG00000009934	YTHDC1	93	63.557	Callithrix_jacchus
ENSDARG00000051953	ythdc1	58	78.588	ENSCAFG00000002821	YTHDC1	93	63.663	Canis_familiaris
ENSDARG00000051953	ythdc1	58	78.588	ENSCAFG00020027112	YTHDC1	93	63.663	Canis_lupus_dingo
ENSDARG00000051953	ythdc1	58	72.953	ENSCHIG00000004810	YTHDC1	95	60.269	Capra_hircus
ENSDARG00000051953	ythdc1	58	78.378	ENSTSYG00000011668	YTHDC1	93	63.796	Carlito_syrichta
ENSDARG00000051953	ythdc1	58	52.000	ENSCAPG00000008722	YTHDC1	89	47.994	Cavia_aperea
ENSDARG00000051953	ythdc1	58	68.305	ENSCPOG00000010929	YTHDC1	92	56.083	Cavia_porcellus
ENSDARG00000051953	ythdc1	58	78.378	ENSCCAG00000035754	YTHDC1	93	63.743	Cebus_capucinus
ENSDARG00000051953	ythdc1	58	78.378	ENSCATG00000036320	YTHDC1	97	59.924	Cercocebus_atys
ENSDARG00000051953	ythdc1	91	64.340	ENSCLAG00000005482	YTHDC1	92	64.079	Chinchilla_lanigera
ENSDARG00000051953	ythdc1	58	77.882	ENSCSAG00000005252	YTHDC1	93	63.557	Chlorocebus_sabaeus
ENSDARG00000051953	ythdc1	91	68.075	ENSCPBG00000021965	YTHDC1	94	63.876	Chrysemys_picta_bellii
ENSDARG00000051953	ythdc1	58	78.378	ENSCANG00000004769	YTHDC1	93	63.557	Colobus_angolensis_palliatus
ENSDARG00000051953	ythdc1	58	78.133	ENSCGRG00001000816	Ythdc1	93	63.772	Cricetulus_griseus_chok1gshd
ENSDARG00000051953	ythdc1	58	78.133	ENSCGRG00000009807	Ythdc1	92	63.885	Cricetulus_griseus_crigri
ENSDARG00000051953	ythdc1	92	59.342	ENSCSEG00000020404	ythdc1	94	62.940	Cynoglossus_semilaevis
ENSDARG00000051953	ythdc1	58	66.901	ENSCVAG00000022349	ythdc1	94	60.154	Cyprinodon_variegatus
ENSDARG00000051953	ythdc1	92	64.181	ENSDNOG00000004949	YTHDC1	93	63.636	Dasypus_novemcinctus
ENSDARG00000051953	ythdc1	58	78.378	ENSDORG00000013045	Ythdc1	92	63.733	Dipodomys_ordii
ENSDARG00000051953	ythdc1	73	80.992	ENSETEG00000001878	YTHDC1	66	83.333	Echinops_telfairi
ENSDARG00000051953	ythdc1	58	78.588	ENSEASG00005018383	YTHDC1	93	63.716	Equus_asinus_asinus
ENSDARG00000051953	ythdc1	80	83.914	ENSECAG00000018303	YTHDC1	80	85.434	Equus_caballus
ENSDARG00000051953	ythdc1	58	77.647	ENSEEUG00000015466	YTHDC1	93	62.791	Erinaceus_europaeus
ENSDARG00000051953	ythdc1	92	73.860	ENSELUG00000014029	ythdc1	96	74.648	Esox_lucius
ENSDARG00000051953	ythdc1	58	79.115	ENSFCAG00000026791	YTHDC1	93	63.901	Felis_catus
ENSDARG00000051953	ythdc1	72	74.607	ENSFALG00000006581	YTHDC1	83	85.434	Ficedula_albicollis
ENSDARG00000051953	ythdc1	91	64.497	ENSFDAG00000018560	YTHDC1	92	64.329	Fukomys_damarensis
ENSDARG00000051953	ythdc1	72	55.102	ENSFHEG00000001286	ythdc1	74	53.367	Fundulus_heteroclitus
ENSDARG00000051953	ythdc1	66	73.778	ENSGMOG00000018815	ythdc1	77	73.333	Gadus_morhua
ENSDARG00000051953	ythdc1	91	65.211	ENSGALG00000035906	YTHDC1	85	65.474	Gallus_gallus
ENSDARG00000051953	ythdc1	92	57.143	ENSGACG00000015486	ythdc1	94	56.348	Gasterosteus_aculeatus
ENSDARG00000051953	ythdc1	92	67.496	ENSGAGG00000007108	YTHDC1	92	67.656	Gopherus_agassizii
ENSDARG00000051953	ythdc1	58	78.378	ENSGGOG00000021958	YTHDC1	97	60.000	Gorilla_gorilla
ENSDARG00000051953	ythdc1	92	59.271	ENSHBUG00000019288	ythdc1	93	63.623	Haplochromis_burtoni
ENSDARG00000051953	ythdc1	94	53.582	ENSHGLG00000003239	-	86	52.833	Heterocephalus_glaber_female
ENSDARG00000051953	ythdc1	92	64.565	ENSHGLG00000006319	-	92	64.608	Heterocephalus_glaber_female
ENSDARG00000051953	ythdc1	94	52.006	ENSHGLG00100008060	-	86	51.220	Heterocephalus_glaber_male
ENSDARG00000051953	ythdc1	92	63.808	ENSHGLG00100001556	-	93	63.358	Heterocephalus_glaber_male
ENSDARG00000051953	ythdc1	58	70.213	ENSHCOG00000001520	ythdc1	75	70.213	Hippocampus_comes
ENSDARG00000051953	ythdc1	92	81.111	ENSIPUG00000018136	ythdc1	92	81.746	Ictalurus_punctatus
ENSDARG00000051953	ythdc1	58	76.867	ENSSTOG00000013652	YTHDC1	93	62.248	Ictidomys_tridecemlineatus
ENSDARG00000051953	ythdc1	58	78.133	ENSJJAG00000010268	Ythdc1	92	63.650	Jaculus_jaculus
ENSDARG00000051953	ythdc1	58	66.265	ENSKMAG00000006483	ythdc1	86	70.843	Kryptolebias_marmoratus
ENSDARG00000051953	ythdc1	64	75.000	ENSLBEG00000020831	ythdc1	72	75.000	Labrus_bergylta
ENSDARG00000051953	ythdc1	86	61.897	ENSLACG00000004893	YTHDC1	92	62.208	Latimeria_chalumnae
ENSDARG00000051953	ythdc1	92	70.631	ENSLOCG00000003045	ythdc1	92	69.300	Lepisosteus_oculatus
ENSDARG00000051953	ythdc1	92	63.821	ENSLAFG00000021592	YTHDC1	100	59.167	Loxodonta_africana
ENSDARG00000051953	ythdc1	58	78.378	ENSMFAG00000031927	YTHDC1	92	63.976	Macaca_fascicularis
ENSDARG00000051953	ythdc1	58	78.378	ENSMMUG00000002265	YTHDC1	93	63.557	Macaca_mulatta
ENSDARG00000051953	ythdc1	58	78.378	ENSMNEG00000033751	YTHDC1	93	63.557	Macaca_nemestrina
ENSDARG00000051953	ythdc1	58	78.378	ENSMLEG00000042147	YTHDC1	93	63.557	Mandrillus_leucophaeus
ENSDARG00000051953	ythdc1	58	70.343	ENSMAMG00000013122	ythdc1	92	62.801	Mastacembelus_armatus
ENSDARG00000051953	ythdc1	92	59.119	ENSMZEG00005023173	ythdc1	93	63.470	Maylandia_zebra
ENSDARG00000051953	ythdc1	92	65.579	ENSMGAG00000010391	YTHDC1	92	63.881	Meleagris_gallopavo
ENSDARG00000051953	ythdc1	58	78.133	ENSMAUG00000001286	Ythdc1	93	63.772	Mesocricetus_auratus
ENSDARG00000051953	ythdc1	92	63.793	ENSMICG00000034640	YTHDC1	93	63.242	Microcebus_murinus
ENSDARG00000051953	ythdc1	91	63.066	ENSMOCG00000020201	Ythdc1	92	63.922	Microtus_ochrogaster
ENSDARG00000051953	ythdc1	66	49.896	ENSMODG00000009173	-	73	56.497	Monodelphis_domestica
ENSDARG00000051953	ythdc1	80	56.863	ENSMODG00000010076	-	68	56.863	Monodelphis_domestica
ENSDARG00000051953	ythdc1	51	57.307	ENSMODG00000004117	-	92	56.966	Monodelphis_domestica
ENSDARG00000051953	ythdc1	92	64.599	ENSMODG00000020754	-	92	64.812	Monodelphis_domestica
ENSDARG00000051953	ythdc1	83	62.351	ENSMALG00000013412	ythdc1	93	63.979	Monopterus_albus
ENSDARG00000051953	ythdc1	58	77.887	MGP_CAROLIEiJ_G0027347	Ythdc1	93	62.774	Mus_caroli
ENSDARG00000051953	ythdc1	92	62.952	ENSMUSG00000035851	Ythdc1	93	62.536	Mus_musculus
ENSDARG00000051953	ythdc1	92	62.952	MGP_PahariEiJ_G0017126	Ythdc1	93	62.828	Mus_pahari
ENSDARG00000051953	ythdc1	92	63.097	MGP_SPRETEiJ_G0028339	Ythdc1	93	62.682	Mus_spretus
ENSDARG00000051953	ythdc1	69	83.914	ENSMPUG00000001743	YTHDC1	60	85.434	Mustela_putorius_furo
ENSDARG00000051953	ythdc1	91	64.540	ENSMLUG00000016300	YTHDC1	92	64.190	Myotis_lucifugus
ENSDARG00000051953	ythdc1	56	53.991	ENSNGAG00000024000	Ythdc1	93	53.882	Nannospalax_galili
ENSDARG00000051953	ythdc1	58	66.093	ENSNBRG00000007663	ythdc1	92	58.179	Neolamprologus_brichardi
ENSDARG00000051953	ythdc1	58	75.751	ENSNLEG00000009202	YTHDC1	96	59.082	Nomascus_leucogenys
ENSDARG00000051953	ythdc1	70	84.615	ENSOPRG00000008986	YTHDC1	66	84.466	Ochotona_princeps
ENSDARG00000051953	ythdc1	92	63.743	ENSODEG00000001715	YTHDC1	93	63.583	Octodon_degus
ENSDARG00000051953	ythdc1	92	75.000	ENSONIG00000012651	ythdc1	95	73.333	Oreochromis_niloticus
ENSDARG00000051953	ythdc1	54	81.365	ENSOANG00000014398	YTHDC1	50	82.740	Ornithorhynchus_anatinus
ENSDARG00000051953	ythdc1	72	83.777	ENSOCUG00000015886	YTHDC1	63	85.154	Oryctolagus_cuniculus
ENSDARG00000051953	ythdc1	92	57.651	ENSORLG00000030544	ythdc1	94	62.287	Oryzias_latipes
ENSDARG00000051953	ythdc1	92	58.025	ENSORLG00020019316	ythdc1	94	62.346	Oryzias_latipes_hni
ENSDARG00000051953	ythdc1	92	58.025	ENSOMEG00000000551	ythdc1	94	59.366	Oryzias_melastigma
ENSDARG00000051953	ythdc1	58	78.353	ENSOGAG00000003362	YTHDC1	93	64.088	Otolemur_garnettii
ENSDARG00000051953	ythdc1	58	77.647	ENSOARG00000008633	YTHDC1	93	63.028	Ovis_aries
ENSDARG00000051953	ythdc1	58	78.378	ENSPPAG00000041315	YTHDC1	97	59.733	Pan_paniscus
ENSDARG00000051953	ythdc1	58	79.115	ENSPPRG00000011979	YTHDC1	92	64.179	Panthera_pardus
ENSDARG00000051953	ythdc1	58	78.624	ENSPTIG00000015527	YTHDC1	92	63.939	Panthera_tigris_altaica
ENSDARG00000051953	ythdc1	58	78.378	ENSPTRG00000016105	YTHDC1	97	59.733	Pan_troglodytes
ENSDARG00000051953	ythdc1	58	78.378	ENSPANG00000021590	YTHDC1	92	63.976	Papio_anubis
ENSDARG00000051953	ythdc1	92	73.494	ENSPKIG00000018497	ythdc1	93	73.083	Paramormyrops_kingsleyae
ENSDARG00000051953	ythdc1	91	64.715	ENSPSIG00000002782	YTHDC1	92	63.746	Pelodiscus_sinensis
ENSDARG00000051953	ythdc1	56	63.750	ENSPMGG00000000970	-	76	65.000	Periophthalmus_magnuspinnatus
ENSDARG00000051953	ythdc1	58	78.133	ENSPEMG00000013850	Ythdc1	92	63.526	Peromyscus_maniculatus_bairdii
ENSDARG00000051953	ythdc1	92	64.394	ENSPCIG00000006870	YTHDC1	92	65.379	Phascolarctos_cinereus
ENSDARG00000051953	ythdc1	58	66.271	ENSPFOG00000013404	ythdc1	94	62.112	Poecilia_formosa
ENSDARG00000051953	ythdc1	58	66.271	ENSPLAG00000011079	ythdc1	85	72.346	Poecilia_latipinna
ENSDARG00000051953	ythdc1	58	66.271	ENSPMEG00000009238	ythdc1	94	62.267	Poecilia_mexicana
ENSDARG00000051953	ythdc1	58	66.076	ENSPREG00000016973	ythdc1	93	58.675	Poecilia_reticulata
ENSDARG00000051953	ythdc1	58	77.882	ENSPPYG00000014726	YTHDC1	87	66.905	Pongo_abelii
ENSDARG00000051953	ythdc1	76	72.609	ENSPCAG00000009607	YTHDC1	77	70.386	Procavia_capensis
ENSDARG00000051953	ythdc1	92	62.158	ENSPCOG00000019105	YTHDC1	92	62.080	Propithecus_coquereli
ENSDARG00000051953	ythdc1	58	75.294	ENSPVAG00000015551	YTHDC1	93	61.594	Pteropus_vampyrus
ENSDARG00000051953	ythdc1	92	59.119	ENSPNYG00000011687	ythdc1	94	63.470	Pundamilia_nyererei
ENSDARG00000051953	ythdc1	92	84.069	ENSPNAG00000028365	ythdc1	92	84.858	Pygocentrus_nattereri
ENSDARG00000051953	ythdc1	58	75.982	ENSRNOG00000001996	Ythdc1	93	61.494	Rattus_norvegicus
ENSDARG00000051953	ythdc1	58	76.798	ENSRBIG00000028279	YTHDC1	96	58.891	Rhinopithecus_bieti
ENSDARG00000051953	ythdc1	58	78.378	ENSRROG00000035028	YTHDC1	93	63.557	Rhinopithecus_roxellana
ENSDARG00000051953	ythdc1	58	78.378	ENSSBOG00000022353	YTHDC1	92	63.976	Saimiri_boliviensis_boliviensis
ENSDARG00000051953	ythdc1	92	64.145	ENSSHAG00000002538	YTHDC1	92	64.662	Sarcophilus_harrisii
ENSDARG00000051953	ythdc1	92	75.943	ENSSFOG00015003298	ythdc1	92	76.094	Scleropages_formosus
ENSDARG00000051953	ythdc1	92	58.171	ENSSMAG00000009086	ythdc1	94	61.290	Scophthalmus_maximus
ENSDARG00000051953	ythdc1	58	70.025	ENSSDUG00000022008	ythdc1	94	63.158	Seriola_dumerili
ENSDARG00000051953	ythdc1	58	70.025	ENSSLDG00000007926	ythdc1	94	63.158	Seriola_lalandi_dorsalis
ENSDARG00000051953	ythdc1	58	77.882	ENSSARG00000010960	YTHDC1	89	69.714	Sorex_araneus
ENSDARG00000051953	ythdc1	92	64.330	ENSSPUG00000009357	YTHDC1	97	63.278	Sphenodon_punctatus
ENSDARG00000051953	ythdc1	58	68.523	ENSSPAG00000011449	ythdc1	94	62.179	Stegastes_partitus
ENSDARG00000051953	ythdc1	58	78.588	ENSSSCG00000035505	YTHDC1	93	63.343	Sus_scrofa
ENSDARG00000051953	ythdc1	92	64.978	ENSTGUG00000004452	-	92	64.179	Taeniopygia_guttata
ENSDARG00000051953	ythdc1	65	66.667	ENSTRUG00000010142	ythdc1	92	54.272	Takifugu_rubripes
ENSDARG00000051953	ythdc1	92	58.954	ENSTNIG00000013243	ythdc1	91	59.685	Tetraodon_nigroviridis
ENSDARG00000051953	ythdc1	92	61.128	ENSTBEG00000011546	YTHDC1	92	61.136	Tupaia_belangeri
ENSDARG00000051953	ythdc1	58	77.412	ENSTTRG00000005083	YTHDC1	93	62.974	Tursiops_truncatus
ENSDARG00000051953	ythdc1	58	79.115	ENSUAMG00000010388	YTHDC1	92	63.166	Ursus_americanus
ENSDARG00000051953	ythdc1	91	60.490	ENSUMAG00000013668	YTHDC1	90	59.816	Ursus_maritimus
ENSDARG00000051953	ythdc1	92	64.328	ENSVPAG00000009040	YTHDC1	92	64.371	Vicugna_pacos
ENSDARG00000051953	ythdc1	58	78.588	ENSVVUG00000005387	YTHDC1	95	60.825	Vulpes_vulpes
ENSDARG00000051953	ythdc1	91	66.561	ENSXETG00000017960	ythdc1	91	67.035	Xenopus_tropicalis
ENSDARG00000051953	ythdc1	92	57.424	ENSXMAG00000005196	ythdc1	94	62.112	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process