EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000052182 (Gene tree)
Gene ID
406569
Gene Symbol
rbfox2
Alias
rbm9|zgc:85694
Full Name
RNA binding fox-1 homolog 2
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
46087 bases
Position
chr6:296130-342216
Accession
ZDB-GENE-040426-2464
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000068474Fox-1_CPF12414.87e-3911
ENSDARP00000068474RRM_1PF00076.223.3e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000073985-3274XM_021476826ENSDARP00000068474241 (aa)XP_021332501F1QZC1
Gene Model
Click here to download ENSDARG00000052182's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000052182's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000052182rbfox210054.545ENSDARG00000074310rbfox3b7152.970
ENSDARG00000052182rbfox29464.912ENSDARG00000010083rbfox3a5467.327
ENSDARG00000052182rbfox210064.419ENSDARG00000014746rbfox17173.770
ENSDARG00000052182rbfox210057.895ENSDARG00000021184rbfox1l5756.327
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000052182rbfox210065.441ENSG00000100320RBFOX29958.893Homo_sapiens
ENSDARG00000052182rbfox210078.279ENSAPOG00000021561-5877.823Acanthochromis_polyacanthus
ENSDARG00000052182rbfox210079.752ENSAPOG00000004877rbfox25180.579Acanthochromis_polyacanthus
ENSDARG00000052182rbfox210064.855ENSAMEG00000007228RBFOX28564.493Ailuropoda_melanoleuca
ENSDARG00000052182rbfox29769.957ENSACIG00000001690rbfox27174.257Amphilophus_citrinellus
ENSDARG00000052182rbfox27384.659ENSACIG00000022922-8384.659Amphilophus_citrinellus
ENSDARG00000052182rbfox210080.992ENSAOCG00000013752rbfox25180.579Amphiprion_ocellaris
ENSDARG00000052182rbfox210078.279ENSAOCG00000015358-5977.823Amphiprion_ocellaris
ENSDARG00000052182rbfox210079.752ENSAPEG00000022359rbfox25180.579Amphiprion_percula
ENSDARG00000052182rbfox210078.279ENSAPEG00000013905-5277.823Amphiprion_percula
ENSDARG00000052182rbfox210079.752ENSATEG00000021951rbfox25180.579Anabas_testudineus
ENSDARG00000052182rbfox210077.366ENSATEG00000009959-5774.494Anabas_testudineus
ENSDARG00000052182rbfox210065.441ENSAPLG00000007609RBFOX26665.074Anas_platyrhynchos
ENSDARG00000052182rbfox210065.441ENSACAG00000016535RBFOX25565.074Anolis_carolinensis
ENSDARG00000052182rbfox210065.441ENSANAG00000015245RBFOX28265.074Aotus_nancymaae
ENSDARG00000052182rbfox210077.551ENSACLG00000017380-5873.896Astatotilapia_calliptera
ENSDARG00000052182rbfox210080.579ENSACLG00000009744rbfox25180.165Astatotilapia_calliptera
ENSDARG00000052182rbfox210088.430ENSAMXG00000011451rbfox26483.884Astyanax_mexicanus
ENSDARG00000052182rbfox210064.855ENSBTAG00000020125RBFOX26764.364Bos_taurus
ENSDARG00000052182rbfox210064.855ENSCJAG00000019456-6664.493Callithrix_jacchus
ENSDARG00000052182rbfox210065.074ENSCJAG00000038886-6464.706Callithrix_jacchus
ENSDARG00000052182rbfox210065.441ENSCAFG00000001701RBFOX26665.074Canis_familiaris
ENSDARG00000052182rbfox210053.532ENSCAFG00020004541RBFOX25452.788Canis_lupus_dingo
ENSDARG00000052182rbfox210065.441ENSCHIG00000014027RBFOX26564.493Capra_hircus
ENSDARG00000052182rbfox210065.441ENSTSYG00000014123RBFOX26665.074Carlito_syrichta
ENSDARG00000052182rbfox29665.560ENSCAPG00000014308RBFOX25169.340Cavia_aperea
ENSDARG00000052182rbfox210065.441ENSCPOG00000022180RBFOX26465.074Cavia_porcellus
ENSDARG00000052182rbfox210065.441ENSCCAG00000036584RBFOX26665.074Cebus_capucinus
ENSDARG00000052182rbfox210065.441ENSCATG00000038655RBFOX26665.074Cercocebus_atys
ENSDARG00000052182rbfox210062.132ENSCLAG00000017106RBFOX26661.765Chinchilla_lanigera
ENSDARG00000052182rbfox27163.415ENSCSAG00000008110RBFOX25163.415Chlorocebus_sabaeus
ENSDARG00000052182rbfox26964.824ENSCHOG00000002887RBFOX26365.829Choloepus_hoffmanni
ENSDARG00000052182rbfox210065.441ENSCPBG00000023144RBFOX26965.074Chrysemys_picta_bellii
ENSDARG00000052182rbfox210065.441ENSCANG00000035832RBFOX26965.074Colobus_angolensis_palliatus
ENSDARG00000052182rbfox210065.441ENSCGRG00001017727Rbfox26665.074Cricetulus_griseus_chok1gshd
ENSDARG00000052182rbfox210064.855ENSCGRG00000014237Rbfox26664.493Cricetulus_griseus_crigri
ENSDARG00000052182rbfox210072.761ENSCSEG00000007748rbfox25471.642Cynoglossus_semilaevis
ENSDARG00000052182rbfox210073.541ENSCSEG00000007360-5472.797Cynoglossus_semilaevis
ENSDARG00000052182rbfox29478.070ENSCVAG00000004491rbfox29182.266Cyprinodon_variegatus
ENSDARG00000052182rbfox210062.800ENSCVAG00000016503-6462.400Cyprinodon_variegatus
ENSDARG00000052182rbfox210065.809ENSDNOG00000004372RBFOX26365.441Dasypus_novemcinctus
ENSDARG00000052182rbfox210060.294ENSDORG00000015003Rbfox26859.926Dipodomys_ordii
ENSDARG00000052182rbfox28088.462ENSETEG00000005638RBFOX26456.981Echinops_telfairi
ENSDARG00000052182rbfox210065.074ENSEASG00005018920RBFOX25565.441Equus_asinus_asinus
ENSDARG00000052182rbfox210065.074ENSECAG00000018923RBFOX25565.441Equus_caballus
ENSDARG00000052182rbfox28560.166ENSEEUG00000004549RBFOX25362.037Erinaceus_europaeus
ENSDARG00000052182rbfox210072.840ENSELUG00000000102rbfox210070.370Esox_lucius
ENSDARG00000052182rbfox210074.060ENSELUG00000009404-5472.031Esox_lucius
ENSDARG00000052182rbfox210064.855ENSFCAG00000010061RBFOX26561.765Felis_catus
ENSDARG00000052182rbfox210065.441ENSFALG00000013111RBFOX26465.074Ficedula_albicollis
ENSDARG00000052182rbfox27063.000ENSFDAG00000006204RBFOX25663.000Fukomys_damarensis
ENSDARG00000052182rbfox210081.818ENSFHEG00000010546rbfox25180.165Fundulus_heteroclitus
ENSDARG00000052182rbfox27277.586ENSFHEG00000006384-9585.621Fundulus_heteroclitus
ENSDARG00000052182rbfox210063.498ENSGMOG00000005278rbfox26662.738Gadus_morhua
ENSDARG00000052182rbfox29479.295ENSGAFG00000008448rbfox29183.663Gambusia_affinis
ENSDARG00000052182rbfox210060.377ENSGACG00000007174-6660.000Gasterosteus_aculeatus
ENSDARG00000052182rbfox210065.568ENSGACG00000015968rbfox26765.934Gasterosteus_aculeatus
ENSDARG00000052182rbfox210065.441ENSGAGG00000025884RBFOX26665.074Gopherus_agassizii
ENSDARG00000052182rbfox210065.441ENSGGOG00000037332RBFOX26665.074Gorilla_gorilla
ENSDARG00000052182rbfox210080.579ENSHBUG00000004356rbfox25480.165Haplochromis_burtoni
ENSDARG00000052182rbfox210077.551ENSHBUG00000000856-5277.510Haplochromis_burtoni
ENSDARG00000052182rbfox210065.441ENSHGLG00000012907RBFOX26765.074Heterocephalus_glaber_female
ENSDARG00000052182rbfox210064.855ENSHGLG00100009986RBFOX26664.493Heterocephalus_glaber_male
ENSDARG00000052182rbfox210078.000ENSHCOG00000005662-5476.800Hippocampus_comes
ENSDARG00000052182rbfox210078.926ENSHCOG00000016102rbfox25179.339Hippocampus_comes
ENSDARG00000052182rbfox210083.884ENSIPUG00000016896rbfox26482.231Ictalurus_punctatus
ENSDARG00000052182rbfox210062.132ENSSTOG00000014841RBFOX26661.765Ictidomys_tridecemlineatus
ENSDARG00000052182rbfox210061.765ENSJJAG00000014885Rbfox26560.294Jaculus_jaculus
ENSDARG00000052182rbfox210077.778ENSKMAG00000013354-8487.500Kryptolebias_marmoratus
ENSDARG00000052182rbfox210079.752ENSKMAG00000021880-5179.752Kryptolebias_marmoratus
ENSDARG00000052182rbfox28574.146ENSLBEG00000026187rbfox28574.634Labrus_bergylta
ENSDARG00000052182rbfox27955.941ENSLBEG00000028310-5751.485Labrus_bergylta
ENSDARG00000052182rbfox210058.993ENSLACG00000003339RBFOX26657.554Latimeria_chalumnae
ENSDARG00000052182rbfox210063.768ENSLAFG00000027140RBFOX26763.406Loxodonta_africana
ENSDARG00000052182rbfox210065.441ENSMFAG00000031994RBFOX26665.074Macaca_fascicularis
ENSDARG00000052182rbfox210065.441ENSMMUG00000014010RBFOX26965.074Macaca_mulatta
ENSDARG00000052182rbfox210065.441ENSMNEG00000034388RBFOX26665.074Macaca_nemestrina
ENSDARG00000052182rbfox210065.441ENSMLEG00000005854RBFOX26665.074Mandrillus_leucophaeus
ENSDARG00000052182rbfox210080.992ENSMAMG00000004293rbfox26867.045Mastacembelus_armatus
ENSDARG00000052182rbfox210076.955ENSMAMG00000008980-5377.733Mastacembelus_armatus
ENSDARG00000052182rbfox210073.878ENSMZEG00005004959-5873.896Maylandia_zebra
ENSDARG00000052182rbfox210076.763ENSMZEG00005023838rbfox26377.178Maylandia_zebra
ENSDARG00000052182rbfox27871.429ENSMGAG00000012724RBFOX210070.899Meleagris_gallopavo
ENSDARG00000052182rbfox210062.132ENSMAUG00000018816Rbfox26661.765Mesocricetus_auratus
ENSDARG00000052182rbfox210064.855ENSMICG00000035417RBFOX26664.493Microcebus_murinus
ENSDARG00000052182rbfox210062.132ENSMOCG00000009327Rbfox26661.765Microtus_ochrogaster
ENSDARG00000052182rbfox27781.622ENSMMOG00000007925-9978.173Mola_mola
ENSDARG00000052182rbfox210070.954ENSMMOG00000008287rbfox210071.784Mola_mola
ENSDARG00000052182rbfox210062.587ENSMODG00000001122RBFOX26962.238Monodelphis_domestica
ENSDARG00000052182rbfox210080.992ENSMALG00000000623rbfox210080.579Monopterus_albus
ENSDARG00000052182rbfox28869.626ENSMALG00000002264-8277.174Monopterus_albus
ENSDARG00000052182rbfox210065.441MGP_CAROLIEiJ_G0019957Rbfox26665.074Mus_caroli
ENSDARG00000052182rbfox210065.441ENSMUSG00000033565Rbfox26665.074Mus_musculus
ENSDARG00000052182rbfox210065.441MGP_PahariEiJ_G0019967Rbfox26665.074Mus_pahari
ENSDARG00000052182rbfox210065.441MGP_SPRETEiJ_G0020860Rbfox26665.074Mus_spretus
ENSDARG00000052182rbfox210064.855ENSMPUG00000012555RBFOX26264.493Mustela_putorius_furo
ENSDARG00000052182rbfox210064.158ENSMLUG00000002676RBFOX26363.799Myotis_lucifugus
ENSDARG00000052182rbfox210062.132ENSNGAG00000020528Rbfox26661.765Nannospalax_galili
ENSDARG00000052182rbfox210080.579ENSNBRG00000018155rbfox25180.165Neolamprologus_brichardi
ENSDARG00000052182rbfox210065.441ENSNLEG00000034979RBFOX26665.074Nomascus_leucogenys
ENSDARG00000052182rbfox29964.469ENSMEUG00000001547RBFOX26764.103Notamacropus_eugenii
ENSDARG00000052182rbfox210064.855ENSODEG00000009937RBFOX26661.765Octodon_degus
ENSDARG00000052182rbfox210067.148ENSONIG00000017998rbfox26566.065Oreochromis_niloticus
ENSDARG00000052182rbfox210066.423ENSONIG00000008341-6566.906Oreochromis_niloticus
ENSDARG00000052182rbfox26965.482ENSOANG00000007489RBFOX25865.482Ornithorhynchus_anatinus
ENSDARG00000052182rbfox210054.710ENSOCUG00000001349RBFOX26253.623Oryctolagus_cuniculus
ENSDARG00000052182rbfox210077.236ENSORLG00000014948-5277.200Oryzias_latipes
ENSDARG00000052182rbfox210081.818ENSORLG00000028082rbfox26772.119Oryzias_latipes
ENSDARG00000052182rbfox210077.236ENSORLG00020005676-5277.200Oryzias_latipes_hni
ENSDARG00000052182rbfox210081.818ENSORLG00020008976rbfox26772.119Oryzias_latipes_hni
ENSDARG00000052182rbfox210077.642ENSORLG00015000797-5277.600Oryzias_latipes_hsok
ENSDARG00000052182rbfox210081.818ENSORLG00015007027rbfox26772.119Oryzias_latipes_hsok
ENSDARG00000052182rbfox210077.959ENSOMEG00000007909-5277.912Oryzias_melastigma
ENSDARG00000052182rbfox210080.992ENSOMEG00000015966rbfox25180.579Oryzias_melastigma
ENSDARG00000052182rbfox210064.855ENSOGAG00000033250RBFOX26764.493Otolemur_garnettii
ENSDARG00000052182rbfox210062.545ENSOARG00000018669RBFOX26662.182Ovis_aries
ENSDARG00000052182rbfox210065.441ENSPPAG00000035653RBFOX26665.074Pan_paniscus
ENSDARG00000052182rbfox210065.441ENSPPRG00000015635RBFOX26965.074Panthera_pardus
ENSDARG00000052182rbfox210064.855ENSPTIG00000019147RBFOX26764.493Panthera_tigris_altaica
ENSDARG00000052182rbfox210065.441ENSPTRG00000014305RBFOX26665.074Pan_troglodytes
ENSDARG00000052182rbfox210064.855ENSPANG00000007030RBFOX26661.232Papio_anubis
ENSDARG00000052182rbfox210064.528ENSPKIG00000010816-6662.452Paramormyrops_kingsleyae
ENSDARG00000052182rbfox210068.182ENSPKIG00000006854-5169.421Paramormyrops_kingsleyae
ENSDARG00000052182rbfox210065.441ENSPSIG00000017828RBFOX26665.074Pelodiscus_sinensis
ENSDARG00000052182rbfox210079.668ENSPMGG00000007138rbfox210078.008Periophthalmus_magnuspinnatus
ENSDARG00000052182rbfox26984.337ENSPMGG00000016969-5084.337Periophthalmus_magnuspinnatus
ENSDARG00000052182rbfox210062.132ENSPEMG00000012542Rbfox26661.765Peromyscus_maniculatus_bairdii
ENSDARG00000052182rbfox210065.201ENSPCIG00000021550RBFOX26964.835Phascolarctos_cinereus
ENSDARG00000052182rbfox210077.869ENSPFOG00000001869-7477.419Poecilia_formosa
ENSDARG00000052182rbfox210081.818ENSPFOG00000014209rbfox25181.405Poecilia_formosa
ENSDARG00000052182rbfox29979.583ENSPLAG00000017308rbfox29979.167Poecilia_latipinna
ENSDARG00000052182rbfox210077.869ENSPLAG00000002710-10077.419Poecilia_latipinna
ENSDARG00000052182rbfox210081.405ENSPMEG00000007320rbfox210080.992Poecilia_mexicana
ENSDARG00000052182rbfox210077.959ENSPMEG00000013663-10077.108Poecilia_mexicana
ENSDARG00000052182rbfox210081.328ENSPREG00000012955rbfox210079.668Poecilia_reticulata
ENSDARG00000052182rbfox26988.554ENSPREG00000016105-6188.554Poecilia_reticulata
ENSDARG00000052182rbfox210064.855ENSPPYG00000011766RBFOX25664.493Pongo_abelii
ENSDARG00000052182rbfox210059.926ENSPCOG00000016273RBFOX26559.559Propithecus_coquereli
ENSDARG00000052182rbfox29963.370ENSPVAG00000015844RBFOX26663.004Pteropus_vampyrus
ENSDARG00000052182rbfox210080.579ENSPNYG00000016161rbfox25180.165Pundamilia_nyererei
ENSDARG00000052182rbfox210078.367ENSPNYG00000020595-5878.313Pundamilia_nyererei
ENSDARG00000052182rbfox210073.029ENSPNAG00000014196-5571.784Pygocentrus_nattereri
ENSDARG00000052182rbfox210064.855ENSRNOG00000004688Rbfox26261.765Rattus_norvegicus
ENSDARG00000052182rbfox210065.441ENSRBIG00000033696RBFOX26665.074Rhinopithecus_bieti
ENSDARG00000052182rbfox210065.441ENSRROG00000035715RBFOX27061.232Rhinopithecus_roxellana
ENSDARG00000052182rbfox210065.441ENSSBOG00000028291RBFOX26665.074Saimiri_boliviensis_boliviensis
ENSDARG00000052182rbfox210065.201ENSSHAG00000006835RBFOX26364.835Sarcophilus_harrisii
ENSDARG00000052182rbfox210077.869ENSSFOG00015010482-6376.230Scleropages_formosus
ENSDARG00000052182rbfox210078.926ENSSMAG00000013662rbfox25179.339Scophthalmus_maximus
ENSDARG00000052182rbfox210074.699ENSSMAG00000004317-5873.494Scophthalmus_maximus
ENSDARG00000052182rbfox210081.405ENSSDUG00000004292rbfox25180.992Seriola_dumerili
ENSDARG00000052182rbfox210077.459ENSSDUG00000009511-5177.823Seriola_dumerili
ENSDARG00000052182rbfox210077.459ENSSLDG00000018052-5177.823Seriola_lalandi_dorsalis
ENSDARG00000052182rbfox210080.992ENSSPAG00000013681rbfox25180.579Stegastes_partitus
ENSDARG00000052182rbfox210077.869ENSSPAG00000016272-5178.226Stegastes_partitus
ENSDARG00000052182rbfox210065.441ENSSSCG00000000152RBFOX26665.074Sus_scrofa
ENSDARG00000052182rbfox210065.441ENSTGUG00000010808RBFOX26765.074Taeniopygia_guttata
ENSDARG00000052182rbfox210062.214ENSTRUG00000007739-6660.687Takifugu_rubripes
ENSDARG00000052182rbfox26371.591ENSTRUG00000002748rbfox210071.591Takifugu_rubripes
ENSDARG00000052182rbfox25776.087ENSTNIG00000006271rbfox26372.464Tetraodon_nigroviridis
ENSDARG00000052182rbfox28890.278ENSTBEG00000003297-5190.278Tupaia_belangeri
ENSDARG00000052182rbfox210064.855ENSTTRG00000006922RBFOX26864.493Tursiops_truncatus
ENSDARG00000052182rbfox29563.019ENSUAMG00000010612RBFOX25765.823Ursus_americanus
ENSDARG00000052182rbfox27661.290ENSUMAG00000016785RBFOX25461.468Ursus_maritimus
ENSDARG00000052182rbfox210058.333ENSVPAG00000002824RBFOX26859.058Vicugna_pacos
ENSDARG00000052182rbfox210065.441ENSVVUG00000023561RBFOX26764.493Vulpes_vulpes
ENSDARG00000052182rbfox210065.201ENSXETG00000000231rbfox26764.103Xenopus_tropicalis
ENSDARG00000052182rbfox29373.661ENSXCOG00000013643rbfox210073.214Xiphophorus_couchianus
ENSDARG00000052182rbfox26380.583ENSXCOG00000015905-6054.772Xiphophorus_couchianus
ENSDARG00000052182rbfox210078.455ENSXMAG00000026769-5277.600Xiphophorus_maculatus
ENSDARG00000052182rbfox210081.405ENSXMAG00000029498rbfox25980.992Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0007399nervous system development21873635.IBAProcess
GO:0043484regulation of RNA splicing21925157.IGIProcess
GO:0043484regulation of RNA splicing21925157.IMPProcess
GO:0048739cardiac muscle fiber development21925157.IGIProcess
GO:0048741skeletal muscle fiber development21925157.IGIProcess

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