EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000052348 (Gene tree)
Gene ID: 282615
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 28516 bases
Position: chr1:52792439-52820954
Accession: ZDB-GENE-021125-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000107618	ResIII	PF04851.15	5.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000123972	-	3711	-	ENSDARP00000107618	1035 (aa)	-	B8A552

Gene Model

Click here to download ENSDARG00000052348's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000052348's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000052348	smarca5	95	82.260	ENSDARG00000012776	smarca1	99	81.086
ENSDARG00000052348	smarca5	52	44.872	ENSDARG00000015471	chd1l	53	45.055

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000052348	smarca5	95	82.727	ENSG00000102038	SMARCA1	93	82.727	Homo_sapiens
ENSDARG00000052348	smarca5	100	91.506	ENSAPOG00000016035	smarca5	99	94.662	Acanthochromis_polyacanthus
ENSDARG00000052348	smarca5	96	81.194	ENSAMEG00000015218	SMARCA1	95	80.118	Ailuropoda_melanoleuca
ENSDARG00000052348	smarca5	87	94.340	ENSACIG00000016982	smarca5	100	94.340	Amphilophus_citrinellus
ENSDARG00000052348	smarca5	100	91.506	ENSAOCG00000015578	smarca5	100	92.100	Amphiprion_ocellaris
ENSDARG00000052348	smarca5	100	91.506	ENSAPEG00000011117	smarca5	99	95.508	Amphiprion_percula
ENSDARG00000052348	smarca5	100	91.023	ENSATEG00000012894	smarca5	100	91.522	Anabas_testudineus
ENSDARG00000052348	smarca5	94	84.103	ENSAPLG00000013149	SMARCA1	99	84.103	Anas_platyrhynchos
ENSDARG00000052348	smarca5	99	81.431	ENSACAG00000011376	SMARCA1	98	81.431	Anolis_carolinensis
ENSDARG00000052348	smarca5	95	78.081	ENSANAG00000023098	SMARCA1	93	78.081	Aotus_nancymaae
ENSDARG00000052348	smarca5	100	91.426	ENSACLG00000025356	smarca5	100	91.426	Astatotilapia_calliptera
ENSDARG00000052348	smarca5	100	94.595	ENSAMXG00000005709	smarca5	100	94.595	Astyanax_mexicanus
ENSDARG00000052348	smarca5	90	84.103	ENSAMXG00000011227	smarca1	99	85.283	Astyanax_mexicanus
ENSDARG00000052348	smarca5	94	83.591	ENSBTAG00000002292	SMARCA1	95	80.060	Bos_taurus
ENSDARG00000052348	smarca5	97	62.574	WBGene00002169	isw-1	99	61.994	Caenorhabditis_elegans
ENSDARG00000052348	smarca5	95	82.727	ENSCJAG00000002868	SMARCA1	93	82.727	Callithrix_jacchus
ENSDARG00000052348	smarca5	95	73.062	ENSCAFG00000018673	SMARCA1	99	74.912	Canis_familiaris
ENSDARG00000052348	smarca5	95	82.710	ENSCAFG00020001751	SMARCA1	95	81.269	Canis_lupus_dingo
ENSDARG00000052348	smarca5	94	83.282	ENSCHIG00000009837	SMARCA1	97	79.806	Capra_hircus
ENSDARG00000052348	smarca5	94	83.590	ENSTSYG00000004240	SMARCA1	94	84.574	Carlito_syrichta
ENSDARG00000052348	smarca5	95	81.608	ENSCPOG00000013601	SMARCA1	94	81.608	Cavia_porcellus
ENSDARG00000052348	smarca5	95	79.798	ENSCCAG00000030817	SMARCA1	93	79.798	Cebus_capucinus
ENSDARG00000052348	smarca5	93	83.851	ENSCATG00000015921	SMARCA1	91	84.017	Cercocebus_atys
ENSDARG00000052348	smarca5	95	82.103	ENSCLAG00000002171	SMARCA1	95	80.773	Chinchilla_lanigera
ENSDARG00000052348	smarca5	95	82.727	ENSCSAG00000008460	SMARCA1	93	82.727	Chlorocebus_sabaeus
ENSDARG00000052348	smarca5	96	83.149	ENSCPBG00000001146	SMARCA1	94	83.149	Chrysemys_picta_bellii
ENSDARG00000052348	smarca5	98	72.745	ENSCING00000004110	swi/snf	99	72.745	Ciona_intestinalis
ENSDARG00000052348	smarca5	96	72.790	ENSCSAVG00000004620	-	99	75.615	Ciona_savignyi
ENSDARG00000052348	smarca5	95	82.828	ENSCANG00000007183	SMARCA1	93	82.828	Colobus_angolensis_palliatus
ENSDARG00000052348	smarca5	95	81.901	ENSCGRG00001010776	Smarca1	95	80.476	Cricetulus_griseus_chok1gshd
ENSDARG00000052348	smarca5	93	82.371	ENSCGRG00000015301	Smarca1	95	82.513	Cricetulus_griseus_crigri
ENSDARG00000052348	smarca5	100	91.426	ENSCSEG00000000328	smarca5	100	91.426	Cynoglossus_semilaevis
ENSDARG00000052348	smarca5	100	90.347	ENSCVAG00000008668	smarca5	99	94.451	Cyprinodon_variegatus
ENSDARG00000052348	smarca5	93	83.420	ENSDNOG00000004315	SMARCA1	96	80.661	Dasypus_novemcinctus
ENSDARG00000052348	smarca5	93	83.731	ENSDORG00000009270	Smarca1	91	83.895	Dipodomys_ordii
ENSDARG00000052348	smarca5	95	74.367	FBgn0011604	Iswi	96	74.229	Drosophila_melanogaster
ENSDARG00000052348	smarca5	78	80.000	ENSETEG00000017426	SMARCA1	83	80.000	Echinops_telfairi
ENSDARG00000052348	smarca5	96	80.382	ENSEBUG00000001239	smarca5	98	80.382	Eptatretus_burgeri
ENSDARG00000052348	smarca5	94	79.381	ENSEASG00005008218	SMARCA1	95	81.410	Equus_asinus_asinus
ENSDARG00000052348	smarca5	96	82.276	ENSECAG00000012106	SMARCA1	97	80.117	Equus_caballus
ENSDARG00000052348	smarca5	76	81.457	ENSEEUG00000014927	SMARCA1	80	81.457	Erinaceus_europaeus
ENSDARG00000052348	smarca5	94	83.881	ENSELUG00000010515	smarca1	95	84.788	Esox_lucius
ENSDARG00000052348	smarca5	95	82.609	ENSFCAG00000018496	SMARCA1	94	82.609	Felis_catus
ENSDARG00000052348	smarca5	88	85.104	ENSFALG00000000209	SMARCA1	98	85.104	Ficedula_albicollis
ENSDARG00000052348	smarca5	93	82.293	ENSFDAG00000009818	SMARCA1	94	82.432	Fukomys_damarensis
ENSDARG00000052348	smarca5	100	89.228	ENSFHEG00000007687	smarca5	100	89.323	Fundulus_heteroclitus
ENSDARG00000052348	smarca5	96	82.129	ENSGALG00000008431	SMARCA1	99	82.129	Gallus_gallus
ENSDARG00000052348	smarca5	100	90.347	ENSGAFG00000017731	smarca5	100	90.848	Gambusia_affinis
ENSDARG00000052348	smarca5	94	84.346	ENSGAGG00000023575	SMARCA1	99	84.346	Gopherus_agassizii
ENSDARG00000052348	smarca5	70	96.000	ENSGGOG00000012841	-	93	78.499	Gorilla_gorilla
ENSDARG00000052348	smarca5	95	81.800	ENSHGLG00000003080	SMARCA1	95	80.476	Heterocephalus_glaber_female
ENSDARG00000052348	smarca5	95	81.307	ENSHGLG00100001102	SMARCA1	99	81.307	Heterocephalus_glaber_male
ENSDARG00000052348	smarca5	97	93.049	ENSHCOG00000005458	smarca5	100	91.514	Hippocampus_comes
ENSDARG00000052348	smarca5	97	80.788	ENSIPUG00000016905	Smarca1	99	83.470	Ictalurus_punctatus
ENSDARG00000052348	smarca5	100	93.243	ENSIPUG00000005229	SMARCA5	99	95.400	Ictalurus_punctatus
ENSDARG00000052348	smarca5	94	83.487	ENSSTOG00000014524	SMARCA1	97	81.157	Ictidomys_tridecemlineatus
ENSDARG00000052348	smarca5	95	81.187	ENSJJAG00000002593	Smarca1	98	78.785	Jaculus_jaculus
ENSDARG00000052348	smarca5	100	90.541	ENSKMAG00000003777	smarca5	100	91.137	Kryptolebias_marmoratus
ENSDARG00000052348	smarca5	94	90.491	ENSLBEG00000013295	SMARCA1	100	94.937	Labrus_bergylta
ENSDARG00000052348	smarca5	100	90.637	ENSLBEG00000018112	smarca5	100	91.040	Labrus_bergylta
ENSDARG00000052348	smarca5	96	83.400	ENSLACG00000016697	SMARCA1	98	83.400	Latimeria_chalumnae
ENSDARG00000052348	smarca5	96	83.852	ENSLOCG00000014591	smarca1	97	83.852	Lepisosteus_oculatus
ENSDARG00000052348	smarca5	96	80.777	ENSLAFG00000000896	SMARCA1	99	80.777	Loxodonta_africana
ENSDARG00000052348	smarca5	95	82.727	ENSMFAG00000002117	SMARCA1	94	83.841	Macaca_fascicularis
ENSDARG00000052348	smarca5	93	83.851	ENSMMUG00000008818	SMARCA1	97	84.813	Macaca_mulatta
ENSDARG00000052348	smarca5	93	83.851	ENSMNEG00000041768	SMARCA1	94	83.841	Macaca_nemestrina
ENSDARG00000052348	smarca5	95	82.727	ENSMLEG00000043198	SMARCA1	93	82.727	Mandrillus_leucophaeus
ENSDARG00000052348	smarca5	100	90.664	ENSMAMG00000014294	smarca5	100	91.066	Mastacembelus_armatus
ENSDARG00000052348	smarca5	100	91.426	ENSMZEG00005009369	smarca5	100	91.426	Maylandia_zebra
ENSDARG00000052348	smarca5	96	82.061	ENSMGAG00000007042	SMARCA1	99	82.061	Meleagris_gallopavo
ENSDARG00000052348	smarca5	93	82.609	ENSMAUG00000008133	Smarca1	95	79.960	Mesocricetus_auratus
ENSDARG00000052348	smarca5	95	82.912	ENSMICG00000015768	SMARCA1	94	82.912	Microcebus_murinus
ENSDARG00000052348	smarca5	94	82.143	ENSMOCG00000009464	Smarca1	97	78.973	Microtus_ochrogaster
ENSDARG00000052348	smarca5	95	92.619	ENSMMOG00000005547	smarca5	99	92.619	Mola_mola
ENSDARG00000052348	smarca5	100	80.212	ENSMODG00000013187	-	99	80.347	Monodelphis_domestica
ENSDARG00000052348	smarca5	100	90.944	ENSMALG00000002081	smarca5	100	91.040	Monopterus_albus
ENSDARG00000052348	smarca5	94	82.245	MGP_CAROLIEiJ_G0033034	Smarca1	92	82.245	Mus_caroli
ENSDARG00000052348	smarca5	95	81.288	ENSMUSG00000031099	Smarca1	94	81.288	Mus_musculus
ENSDARG00000052348	smarca5	93	82.425	MGP_PahariEiJ_G0031579	Smarca1	92	82.425	Mus_pahari
ENSDARG00000052348	smarca5	95	81.288	MGP_SPRETEiJ_G0034192	Smarca1	94	81.288	Mus_spretus
ENSDARG00000052348	smarca5	95	81.718	ENSMPUG00000017423	SMARCA1	90	80.313	Mustela_putorius_furo
ENSDARG00000052348	smarca5	94	81.395	ENSMLUG00000029614	SMARCA1	96	78.252	Myotis_lucifugus
ENSDARG00000052348	smarca5	93	82.577	ENSNGAG00000006492	Smarca1	93	81.231	Nannospalax_galili
ENSDARG00000052348	smarca5	95	94.705	ENSNBRG00000004463	smarca5	99	94.064	Neolamprologus_brichardi
ENSDARG00000052348	smarca5	95	81.994	ENSNLEG00000015179	SMARCA1	96	82.128	Nomascus_leucogenys
ENSDARG00000052348	smarca5	90	74.842	ENSMEUG00000008819	SMARCA1	99	74.842	Notamacropus_eugenii
ENSDARG00000052348	smarca5	92	83.178	ENSODEG00000012163	SMARCA1	91	82.672	Octodon_degus
ENSDARG00000052348	smarca5	100	91.522	ENSONIG00000009993	smarca5	100	91.522	Oreochromis_niloticus
ENSDARG00000052348	smarca5	94	84.861	ENSOANG00000002862	SMARCA1	99	84.861	Ornithorhynchus_anatinus
ENSDARG00000052348	smarca5	94	83.692	ENSOCUG00000001047	SMARCA1	93	83.046	Oryctolagus_cuniculus
ENSDARG00000052348	smarca5	97	92.567	ENSORLG00000021998	smarca5	100	90.962	Oryzias_latipes
ENSDARG00000052348	smarca5	97	92.666	ENSORLG00020017679	smarca5	100	91.049	Oryzias_latipes_hni
ENSDARG00000052348	smarca5	100	91.145	ENSORLG00015017210	smarca5	100	91.338	Oryzias_latipes_hsok
ENSDARG00000052348	smarca5	97	92.567	ENSOMEG00000000086	smarca5	100	90.953	Oryzias_melastigma
ENSDARG00000052348	smarca5	92	83.888	ENSOGAG00000004399	SMARCA1	94	81.332	Otolemur_garnettii
ENSDARG00000052348	smarca5	94	83.282	ENSOARG00000014638	SMARCA1	99	83.282	Ovis_aries
ENSDARG00000052348	smarca5	95	82.727	ENSPPAG00000034647	SMARCA1	93	82.727	Pan_paniscus
ENSDARG00000052348	smarca5	95	82.710	ENSPPRG00000008929	SMARCA1	94	82.710	Panthera_pardus
ENSDARG00000052348	smarca5	95	80.915	ENSPTIG00000000915	SMARCA1	97	80.915	Panthera_tigris_altaica
ENSDARG00000052348	smarca5	95	82.727	ENSPTRG00000049876	SMARCA1	91	84.017	Pan_troglodytes
ENSDARG00000052348	smarca5	95	82.727	ENSPANG00000003871	SMARCA1	93	82.727	Papio_anubis
ENSDARG00000052348	smarca5	94	81.716	ENSPKIG00000013411	smarca1	99	81.716	Paramormyrops_kingsleyae
ENSDARG00000052348	smarca5	94	84.346	ENSPSIG00000010101	SMARCA1	99	84.346	Pelodiscus_sinensis
ENSDARG00000052348	smarca5	93	82.474	ENSPEMG00000017503	Smarca1	95	80.161	Peromyscus_maniculatus_bairdii
ENSDARG00000052348	smarca5	96	83.049	ENSPCIG00000015460	SMARCA1	98	83.049	Phascolarctos_cinereus
ENSDARG00000052348	smarca5	100	90.444	ENSPFOG00000007649	smarca5	100	90.944	Poecilia_formosa
ENSDARG00000052348	smarca5	100	90.444	ENSPLAG00000003363	smarca5	100	90.944	Poecilia_latipinna
ENSDARG00000052348	smarca5	100	90.541	ENSPMEG00000019849	smarca5	100	91.040	Poecilia_mexicana
ENSDARG00000052348	smarca5	100	90.541	ENSPREG00000023250	smarca5	100	91.040	Poecilia_reticulata
ENSDARG00000052348	smarca5	95	79.899	ENSPPYG00000020703	SMARCA1	93	79.899	Pongo_abelii
ENSDARG00000052348	smarca5	77	75.000	ENSPCOG00000020722	SMARCA1	93	79.941	Propithecus_coquereli
ENSDARG00000052348	smarca5	87	83.850	ENSPVAG00000003805	SMARCA1	90	84.079	Pteropus_vampyrus
ENSDARG00000052348	smarca5	57	94.278	ENSPNYG00000012299	smarca5	92	93.119	Pundamilia_nyererei
ENSDARG00000052348	smarca5	95	81.598	ENSRNOG00000003762	Smarca1	94	81.598	Rattus_norvegicus
ENSDARG00000052348	smarca5	95	82.828	ENSRROG00000034167	SMARCA1	93	82.828	Rhinopithecus_roxellana
ENSDARG00000052348	smarca5	94	83.487	ENSSBOG00000020641	SMARCA1	99	83.487	Saimiri_boliviensis_boliviensis
ENSDARG00000052348	smarca5	94	80.021	ENSSHAG00000013518	SMARCA1	99	80.144	Sarcophilus_harrisii
ENSDARG00000052348	smarca5	97	92.008	ENSSFOG00015016794	smarca5	100	94.014	Scleropages_formosus
ENSDARG00000052348	smarca5	98	82.104	ENSSFOG00015009043	smarca1	99	82.104	Scleropages_formosus
ENSDARG00000052348	smarca5	100	90.270	ENSSMAG00000004801	smarca5	100	90.288	Scophthalmus_maximus
ENSDARG00000052348	smarca5	100	90.637	ENSSDUG00000020690	smarca5	100	91.040	Seriola_dumerili
ENSDARG00000052348	smarca5	100	90.637	ENSSLDG00000025190	smarca5	100	91.040	Seriola_lalandi_dorsalis
ENSDARG00000052348	smarca5	78	83.274	ENSSARG00000000842	SMARCA1	81	83.274	Sorex_araneus
ENSDARG00000052348	smarca5	96	81.548	ENSSPUG00000000590	SMARCA1	97	82.189	Sphenodon_punctatus
ENSDARG00000052348	smarca5	100	91.120	ENSSPAG00000002894	smarca5	100	91.715	Stegastes_partitus
ENSDARG00000052348	smarca5	93	83.523	ENSSSCG00000012649	SMARCA1	97	81.014	Sus_scrofa
ENSDARG00000052348	smarca5	94	84.000	ENSTGUG00000003899	-	99	84.000	Taeniopygia_guttata
ENSDARG00000052348	smarca5	99	90.883	ENSTRUG00000014094	smarca5	99	90.997	Takifugu_rubripes
ENSDARG00000052348	smarca5	97	91.026	ENSTNIG00000017717	smarca5	96	91.477	Tetraodon_nigroviridis
ENSDARG00000052348	smarca5	86	82.575	ENSTBEG00000014973	SMARCA1	89	82.731	Tupaia_belangeri
ENSDARG00000052348	smarca5	92	80.374	ENSTTRG00000006168	SMARCA1	96	80.380	Tursiops_truncatus
ENSDARG00000052348	smarca5	96	82.175	ENSUAMG00000020201	SMARCA1	95	81.070	Ursus_americanus
ENSDARG00000052348	smarca5	96	78.593	ENSUMAG00000004073	SMARCA1	95	84.367	Ursus_maritimus
ENSDARG00000052348	smarca5	73	87.171	ENSVPAG00000010492	-	77	87.889	Vicugna_pacos
ENSDARG00000052348	smarca5	95	82.710	ENSVVUG00000008878	SMARCA1	98	85.043	Vulpes_vulpes
ENSDARG00000052348	smarca5	95	83.858	ENSXETG00000001526	smarca1	99	83.858	Xenopus_tropicalis
ENSDARG00000052348	smarca5	97	92.170	ENSXCOG00000011170	smarca5	100	92.270	Xiphophorus_couchianus
ENSDARG00000052348	smarca5	100	90.347	ENSXMAG00000009678	smarca5	98	94.105	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003231	cardiac ventricle development	25517466.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0016589	NURF complex	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	-	IEA	Function
GO:0016887	ATPase activity	-	IEA	Function
GO:0031491	nucleosome binding	-	IEA	Function
GO:0043044	ATP-dependent chromatin remodeling	-	IEA	Process
GO:0060041	retina development in camera-type eye	15716491.	IMP	Process