EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000052480 (Gene tree)
Gene ID: 794079
Gene Symbol: pdcd11
Alias: cb680|im:7148359|sb:cb680|wu:fc68c10
Full Name: programmed cell death 11
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 46157 bases
Position: chr1:49435017-49481173
Accession: ZDB-GENE-030131-4076
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000112333	Suf	PF05843.14	4.1e-07	1	1
ENSDARP00000112333	S1	PF00575.23	1.9e-60	1	3
ENSDARP00000112333	S1	PF00575.23	1.9e-60	2	3
ENSDARP00000112333	S1	PF00575.23	1.9e-60	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000124833	-	5793	XM_005160117	ENSDARP00000112333	1816 (aa)	XP_005160174	B8JIP9
ENSDART00000122961	-	851	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000052480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000052480's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000052480	pdcd11	99	43.312	ENSG00000148843	PDCD11	99	43.213	Homo_sapiens
ENSDARG00000052480	pdcd11	100	53.492	ENSAPOG00000015629	pdcd11	100	53.002	Acanthochromis_polyacanthus
ENSDARG00000052480	pdcd11	99	43.197	ENSAMEG00000017935	PDCD11	99	43.197	Ailuropoda_melanoleuca
ENSDARG00000052480	pdcd11	50	48.862	ENSACIG00000006458	-	98	48.759	Amphilophus_citrinellus
ENSDARG00000052480	pdcd11	100	53.359	ENSAOCG00000015287	pdcd11	100	52.998	Amphiprion_ocellaris
ENSDARG00000052480	pdcd11	55	51.521	ENSAPEG00000020240	pdcd11	99	51.521	Amphiprion_percula
ENSDARG00000052480	pdcd11	99	52.868	ENSATEG00000021043	pdcd11	99	52.728	Anabas_testudineus
ENSDARG00000052480	pdcd11	99	43.138	ENSAPLG00000010301	PDCD11	99	42.247	Anas_platyrhynchos
ENSDARG00000052480	pdcd11	99	43.502	ENSACAG00000004796	PDCD11	99	43.371	Anolis_carolinensis
ENSDARG00000052480	pdcd11	99	43.640	ENSANAG00000034576	PDCD11	99	43.282	Aotus_nancymaae
ENSDARG00000052480	pdcd11	87	73.510	ENSACLG00000018236	pdcd11	99	67.930	Astatotilapia_calliptera
ENSDARG00000052480	pdcd11	99	49.519	ENSAMXG00000005458	pdcd11	97	58.091	Astyanax_mexicanus
ENSDARG00000052480	pdcd11	99	42.933	ENSBTAG00000009715	PDCD11	99	42.774	Bos_taurus
ENSDARG00000052480	pdcd11	99	43.214	ENSCJAG00000018257	PDCD11	99	43.275	Callithrix_jacchus
ENSDARG00000052480	pdcd11	99	43.853	ENSCAFG00000010411	PDCD11	99	43.534	Canis_familiaris
ENSDARG00000052480	pdcd11	99	43.861	ENSCAFG00020010369	PDCD11	99	43.464	Canis_lupus_dingo
ENSDARG00000052480	pdcd11	99	42.766	ENSCHIG00000025218	PDCD11	99	42.713	Capra_hircus
ENSDARG00000052480	pdcd11	96	42.572	ENSTSYG00000033423	PDCD11	99	42.264	Carlito_syrichta
ENSDARG00000052480	pdcd11	94	40.191	ENSCAPG00000005386	PDCD11	99	40.055	Cavia_aperea
ENSDARG00000052480	pdcd11	99	43.056	ENSCPOG00000010957	PDCD11	98	43.652	Cavia_porcellus
ENSDARG00000052480	pdcd11	99	43.351	ENSCCAG00000018950	PDCD11	99	42.994	Cebus_capucinus
ENSDARG00000052480	pdcd11	99	43.245	ENSCATG00000044331	PDCD11	99	43.298	Cercocebus_atys
ENSDARG00000052480	pdcd11	99	43.040	ENSCLAG00000001029	PDCD11	99	42.548	Chinchilla_lanigera
ENSDARG00000052480	pdcd11	99	43.114	ENSCSAG00000005346	PDCD11	99	42.971	Chlorocebus_sabaeus
ENSDARG00000052480	pdcd11	69	69.767	ENSCHOG00000004796	PDCD11	75	69.767	Choloepus_hoffmanni
ENSDARG00000052480	pdcd11	100	45.075	ENSCPBG00000024487	PDCD11	100	60.278	Chrysemys_picta_bellii
ENSDARG00000052480	pdcd11	77	35.052	ENSCING00000002715	-	76	34.906	Ciona_intestinalis
ENSDARG00000052480	pdcd11	99	43.131	ENSCANG00000043300	PDCD11	99	42.812	Colobus_angolensis_palliatus
ENSDARG00000052480	pdcd11	99	42.827	ENSCGRG00001006458	Pdcd11	99	42.582	Cricetulus_griseus_chok1gshd
ENSDARG00000052480	pdcd11	99	42.697	ENSCGRG00000003583	Pdcd11	99	42.452	Cricetulus_griseus_crigri
ENSDARG00000052480	pdcd11	97	52.482	ENSCSEG00000010739	pdcd11	99	52.033	Cynoglossus_semilaevis
ENSDARG00000052480	pdcd11	95	55.846	ENSCVAG00000018903	pdcd11	99	56.154	Cyprinodon_variegatus
ENSDARG00000052480	pdcd11	99	43.061	ENSDNOG00000013838	PDCD11	99	42.495	Dasypus_novemcinctus
ENSDARG00000052480	pdcd11	99	42.903	ENSDORG00000010420	Pdcd11	99	42.697	Dipodomys_ordii
ENSDARG00000052480	pdcd11	70	34.524	FBgn0039182	CG5728	89	34.524	Drosophila_melanogaster
ENSDARG00000052480	pdcd11	93	39.115	ENSETEG00000000813	PDCD11	99	38.614	Echinops_telfairi
ENSDARG00000052480	pdcd11	78	46.758	ENSEBUG00000002358	-	95	46.758	Eptatretus_burgeri
ENSDARG00000052480	pdcd11	95	43.454	ENSEASG00005015159	PDCD11	99	43.423	Equus_asinus_asinus
ENSDARG00000052480	pdcd11	99	43.252	ENSECAG00000020507	PDCD11	99	42.926	Equus_caballus
ENSDARG00000052480	pdcd11	91	43.434	ENSEEUG00000009245	PDCD11	90	43.561	Erinaceus_europaeus
ENSDARG00000052480	pdcd11	100	53.040	ENSELUG00000004211	pdcd11	99	52.877	Esox_lucius
ENSDARG00000052480	pdcd11	99	42.865	ENSFCAG00000002384	PDCD11	99	43.009	Felis_catus
ENSDARG00000052480	pdcd11	100	43.155	ENSFALG00000008775	PDCD11	100	43.162	Ficedula_albicollis
ENSDARG00000052480	pdcd11	99	43.092	ENSFDAG00000009532	PDCD11	99	42.979	Fukomys_damarensis
ENSDARG00000052480	pdcd11	88	75.329	ENSFHEG00000022997	pdcd11	96	75.329	Fundulus_heteroclitus
ENSDARG00000052480	pdcd11	94	49.835	ENSGMOG00000004186	pdcd11	91	61.170	Gadus_morhua
ENSDARG00000052480	pdcd11	75	41.284	ENSGALG00000008265	PDCD11	99	41.277	Gallus_gallus
ENSDARG00000052480	pdcd11	100	50.292	ENSGAFG00000012806	pdcd11	100	49.708	Gambusia_affinis
ENSDARG00000052480	pdcd11	100	52.162	ENSGACG00000018233	pdcd11	95	68.351	Gasterosteus_aculeatus
ENSDARG00000052480	pdcd11	95	45.618	ENSGAGG00000024314	PDCD11	99	45.536	Gopherus_agassizii
ENSDARG00000052480	pdcd11	99	43.305	ENSGGOG00000011621	PDCD11	99	43.199	Gorilla_gorilla
ENSDARG00000052480	pdcd11	99	42.539	ENSHGLG00000001462	PDCD11	99	42.553	Heterocephalus_glaber_female
ENSDARG00000052480	pdcd11	99	41.954	ENSHGLG00100018779	PDCD11	99	41.968	Heterocephalus_glaber_male
ENSDARG00000052480	pdcd11	100	51.788	ENSHCOG00000016006	pdcd11	100	51.788	Hippocampus_comes
ENSDARG00000052480	pdcd11	61	54.016	ENSIPUG00000015102	pdcd11	99	55.688	Ictalurus_punctatus
ENSDARG00000052480	pdcd11	99	42.513	ENSSTOG00000014553	PDCD11	99	42.476	Ictidomys_tridecemlineatus
ENSDARG00000052480	pdcd11	99	43.132	ENSJJAG00000015523	Pdcd11	99	43.025	Jaculus_jaculus
ENSDARG00000052480	pdcd11	50	51.965	ENSKMAG00000021182	pdcd11	99	51.856	Kryptolebias_marmoratus
ENSDARG00000052480	pdcd11	65	50.514	ENSLBEG00000009990	-	98	50.691	Labrus_bergylta
ENSDARG00000052480	pdcd11	100	50.675	ENSLOCG00000011818	pdcd11	100	50.676	Lepisosteus_oculatus
ENSDARG00000052480	pdcd11	99	43.185	ENSLAFG00000008398	PDCD11	99	42.972	Loxodonta_africana
ENSDARG00000052480	pdcd11	99	43.344	ENSMFAG00000044058	PDCD11	99	43.078	Macaca_fascicularis
ENSDARG00000052480	pdcd11	99	43.344	ENSMMUG00000007058	PDCD11	99	43.078	Macaca_mulatta
ENSDARG00000052480	pdcd11	99	43.344	ENSMNEG00000040726	PDCD11	99	42.979	Macaca_nemestrina
ENSDARG00000052480	pdcd11	99	43.132	ENSMLEG00000040978	PDCD11	99	42.888	Mandrillus_leucophaeus
ENSDARG00000052480	pdcd11	100	52.814	ENSMAMG00000009572	pdcd11	100	52.922	Mastacembelus_armatus
ENSDARG00000052480	pdcd11	99	43.737	ENSMGAG00000010482	PDCD11	100	43.793	Meleagris_gallopavo
ENSDARG00000052480	pdcd11	91	45.661	ENSMAUG00000014924	Pdcd11	96	45.828	Mesocricetus_auratus
ENSDARG00000052480	pdcd11	99	43.693	ENSMICG00000012421	PDCD11	99	43.474	Microcebus_murinus
ENSDARG00000052480	pdcd11	99	43.070	ENSMOCG00000021792	Pdcd11	99	42.827	Microtus_ochrogaster
ENSDARG00000052480	pdcd11	99	46.409	ENSMMOG00000007572	pdcd11	98	51.581	Mola_mola
ENSDARG00000052480	pdcd11	100	42.419	ENSMODG00000011077	PDCD11	100	41.939	Monodelphis_domestica
ENSDARG00000052480	pdcd11	96	63.953	ENSMALG00000003859	pdcd11	98	51.459	Monopterus_albus
ENSDARG00000052480	pdcd11	99	42.158	MGP_CAROLIEiJ_G0023050	Pdcd11	99	42.293	Mus_caroli
ENSDARG00000052480	pdcd11	99	42.088	ENSMUSG00000025047	Pdcd11	99	42.324	Mus_musculus
ENSDARG00000052480	pdcd11	99	42.539	MGP_PahariEiJ_G0014540	Pdcd11	99	42.796	Mus_pahari
ENSDARG00000052480	pdcd11	99	42.279	MGP_SPRETEiJ_G0023971	Pdcd11	99	42.285	Mus_spretus
ENSDARG00000052480	pdcd11	99	43.693	ENSMPUG00000016829	PDCD11	99	43.936	Mustela_putorius_furo
ENSDARG00000052480	pdcd11	99	43.039	ENSMLUG00000004997	PDCD11	99	42.887	Myotis_lucifugus
ENSDARG00000052480	pdcd11	99	42.978	ENSNGAG00000018143	Pdcd11	99	42.956	Nannospalax_galili
ENSDARG00000052480	pdcd11	83	62.102	ENSNBRG00000021596	pdcd11	96	59.238	Neolamprologus_brichardi
ENSDARG00000052480	pdcd11	99	41.644	ENSNLEG00000026700	PDCD11	99	41.387	Nomascus_leucogenys
ENSDARG00000052480	pdcd11	64	65.333	ENSMEUG00000013719	-	63	65.333	Notamacropus_eugenii
ENSDARG00000052480	pdcd11	99	44.699	ENSOPRG00000010593	PDCD11	96	44.699	Ochotona_princeps
ENSDARG00000052480	pdcd11	99	42.782	ENSODEG00000008079	PDCD11	99	42.078	Octodon_degus
ENSDARG00000052480	pdcd11	99	51.730	ENSONIG00000018835	pdcd11	99	52.000	Oreochromis_niloticus
ENSDARG00000052480	pdcd11	99	41.534	ENSOANG00000001636	-	99	41.311	Ornithorhynchus_anatinus
ENSDARG00000052480	pdcd11	99	42.796	ENSOCUG00000006312	PDCD11	99	42.208	Oryctolagus_cuniculus
ENSDARG00000052480	pdcd11	100	53.228	ENSORLG00020003642	pdcd11	100	53.056	Oryzias_latipes_hni
ENSDARG00000052480	pdcd11	100	53.283	ENSORLG00015001618	pdcd11	100	53.084	Oryzias_latipes_hsok
ENSDARG00000052480	pdcd11	74	53.427	ENSOMEG00000010904	pdcd11	98	53.140	Oryzias_melastigma
ENSDARG00000052480	pdcd11	99	43.153	ENSOGAG00000008683	PDCD11	99	42.622	Otolemur_garnettii
ENSDARG00000052480	pdcd11	99	42.758	ENSOARG00000003719	PDCD11	99	42.705	Ovis_aries
ENSDARG00000052480	pdcd11	99	42.667	ENSPPAG00000024593	PDCD11	99	42.569	Pan_paniscus
ENSDARG00000052480	pdcd11	99	43.275	ENSPPRG00000015133	PDCD11	99	43.138	Panthera_pardus
ENSDARG00000052480	pdcd11	99	43.275	ENSPTIG00000011433	PDCD11	99	43.138	Panthera_tigris_altaica
ENSDARG00000052480	pdcd11	99	43.252	ENSPTRG00000002911	PDCD11	99	43.153	Pan_troglodytes
ENSDARG00000052480	pdcd11	99	43.291	ENSPANG00000020959	PDCD11	99	43.344	Papio_anubis
ENSDARG00000052480	pdcd11	99	50.109	ENSPKIG00000000973	pdcd11	99	49.892	Paramormyrops_kingsleyae
ENSDARG00000052480	pdcd11	77	42.471	ENSPSIG00000005102	PDCD11	95	42.471	Pelodiscus_sinensis
ENSDARG00000052480	pdcd11	75	74.510	ENSPMGG00000007289	pdcd11	99	57.026	Periophthalmus_magnuspinnatus
ENSDARG00000052480	pdcd11	99	43.206	ENSPEMG00000010315	Pdcd11	99	43.199	Peromyscus_maniculatus_bairdii
ENSDARG00000052480	pdcd11	99	38.771	ENSPMAG00000003098	pdcd11	99	38.930	Petromyzon_marinus
ENSDARG00000052480	pdcd11	99	44.127	ENSPCIG00000001118	PDCD11	99	43.958	Phascolarctos_cinereus
ENSDARG00000052480	pdcd11	100	51.486	ENSPFOG00000006012	pdcd11	100	51.486	Poecilia_formosa
ENSDARG00000052480	pdcd11	100	48.080	ENSPLAG00000014494	pdcd11	98	50.807	Poecilia_latipinna
ENSDARG00000052480	pdcd11	100	53.344	ENSPMEG00000018177	pdcd11	100	53.344	Poecilia_mexicana
ENSDARG00000052480	pdcd11	100	51.564	ENSPREG00000000475	pdcd11	100	51.616	Poecilia_reticulata
ENSDARG00000052480	pdcd11	99	42.927	ENSPPYG00000002621	PDCD11	99	42.510	Pongo_abelii
ENSDARG00000052480	pdcd11	64	55.556	ENSPCAG00000011663	PDCD11	65	55.556	Procavia_capensis
ENSDARG00000052480	pdcd11	93	46.447	ENSPCOG00000023327	PDCD11	99	46.447	Propithecus_coquereli
ENSDARG00000052480	pdcd11	99	42.630	ENSPVAG00000004176	PDCD11	99	42.455	Pteropus_vampyrus
ENSDARG00000052480	pdcd11	95	60.171	ENSPNAG00000017225	pdcd11	100	60.387	Pygocentrus_nattereri
ENSDARG00000052480	pdcd11	99	42.561	ENSRNOG00000020304	Pdcd11	99	42.569	Rattus_norvegicus
ENSDARG00000052480	pdcd11	99	43.291	ENSRBIG00000011889	PDCD11	99	43.131	Rhinopithecus_bieti
ENSDARG00000052480	pdcd11	99	43.291	ENSRROG00000030483	PDCD11	99	43.131	Rhinopithecus_roxellana
ENSDARG00000052480	pdcd11	84	44.649	YMR229C	-	94	38.304	Saccharomyces_cerevisiae
ENSDARG00000052480	pdcd11	99	41.996	ENSSBOG00000030308	PDCD11	99	41.808	Saimiri_boliviensis_boliviensis
ENSDARG00000052480	pdcd11	100	42.698	ENSSHAG00000018258	PDCD11	100	42.698	Sarcophilus_harrisii
ENSDARG00000052480	pdcd11	100	53.200	ENSSFOG00015003881	pdcd11	100	53.200	Scleropages_formosus
ENSDARG00000052480	pdcd11	100	53.438	ENSSMAG00000006612	pdcd11	100	53.269	Scophthalmus_maximus
ENSDARG00000052480	pdcd11	94	57.075	ENSSDUG00000021302	pdcd11	99	56.542	Seriola_dumerili
ENSDARG00000052480	pdcd11	72	61.538	ENSSARG00000002540	PDCD11	67	61.538	Sorex_araneus
ENSDARG00000052480	pdcd11	97	51.899	ENSSPAG00000017558	pdcd11	100	51.395	Stegastes_partitus
ENSDARG00000052480	pdcd11	99	43.342	ENSSSCG00000010599	PDCD11	99	43.531	Sus_scrofa
ENSDARG00000052480	pdcd11	69	48.430	ENSTRUG00000014291	pdcd11	100	48.430	Takifugu_rubripes
ENSDARG00000052480	pdcd11	99	51.256	ENSTNIG00000012085	pdcd11	99	51.256	Tetraodon_nigroviridis
ENSDARG00000052480	pdcd11	99	41.383	ENSTBEG00000001893	PDCD11	99	41.330	Tupaia_belangeri
ENSDARG00000052480	pdcd11	99	40.680	ENSTTRG00000003356	PDCD11	99	40.423	Tursiops_truncatus
ENSDARG00000052480	pdcd11	99	43.100	ENSUAMG00000018015	PDCD11	99	43.206	Ursus_americanus
ENSDARG00000052480	pdcd11	99	42.624	ENSUMAG00000023567	PDCD11	99	42.541	Ursus_maritimus
ENSDARG00000052480	pdcd11	67	38.978	ENSVPAG00000007405	PDCD11	83	38.978	Vicugna_pacos
ENSDARG00000052480	pdcd11	99	43.777	ENSVVUG00000004457	PDCD11	99	43.640	Vulpes_vulpes
ENSDARG00000052480	pdcd11	100	42.421	ENSXETG00000009482	pdcd11	100	42.760	Xenopus_tropicalis
ENSDARG00000052480	pdcd11	100	44.906	ENSXCOG00000012420	pdcd11	100	45.073	Xiphophorus_couchianus
ENSDARG00000052480	pdcd11	100	51.838	ENSXMAG00000004638	pdcd11	100	51.728	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0032040	small-subunit processome	21873635.	IBA	Component