EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000052617 (Gene tree)
Gene ID: 553693
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB-binding 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 27368 bases
Position: chr3:46559639-46587006
Accession: ZDB-GENE-050522-99
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000109981	RRM_1	PF00076.22	3e-27	1	2
ENSDARP00000109981	RRM_1	PF00076.22	3e-27	2	2
ENSDARP00000123654	RRM_1	PF00076.22	4.4e-25	1	2
ENSDARP00000123654	RRM_1	PF00076.22	4.4e-25	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000127832	-	3886	XM_021470765	ENSDARP00000109981	725 (aa)	XP_021326440	E7FAA3
ENSDART00000146189	-	1343	-	ENSDARP00000123654	322 (aa)	-	F1Q561
ENSDART00000151035	-	370	-	ENSDARP00000125832	124 (aa)	-	I3ISF5

Gene Model

Click here to download ENSDARG00000052617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000052617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000052617	raver1	71	65.116	ENSDARG00000075034	raver2	69	65.116
ENSDARG00000052617	raver1	75	31.818	ENSDARG00000040732	elavl2	52	31.818
ENSDARG00000052617	raver1	57	30.476	ENSDARG00000038695	elavl1a	67	35.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000052617	raver1	91	51.182	ENSG00000161847	RAVER1	69	65.152	Homo_sapiens
ENSDARG00000052617	raver1	98	67.455	ENSAPOG00000017267	raver1	90	68.707	Acanthochromis_polyacanthus
ENSDARG00000052617	raver1	89	77.855	ENSACIG00000008853	raver1	93	78.339	Amphilophus_citrinellus
ENSDARG00000052617	raver1	98	67.967	ENSAOCG00000005128	raver1	95	69.220	Amphiprion_ocellaris
ENSDARG00000052617	raver1	98	68.050	ENSAPEG00000010854	raver1	98	69.295	Amphiprion_percula
ENSDARG00000052617	raver1	98	68.741	ENSATEG00000021004	raver1	98	68.326	Anabas_testudineus
ENSDARG00000052617	raver1	65	69.378	ENSACAG00000008386	-	73	54.635	Anolis_carolinensis
ENSDARG00000052617	raver1	100	65.986	ENSACLG00000018492	raver1	94	68.276	Astatotilapia_calliptera
ENSDARG00000052617	raver1	98	73.626	ENSAMXG00000005132	raver1	98	74.211	Astyanax_mexicanus
ENSDARG00000052617	raver1	92	52.006	ENSBTAG00000015721	RAVER1	97	53.179	Bos_taurus
ENSDARG00000052617	raver1	93	52.454	ENSCAFG00000017861	RAVER1	96	52.235	Canis_familiaris
ENSDARG00000052617	raver1	93	52.454	ENSCAFG00020024449	RAVER1	98	52.381	Canis_lupus_dingo
ENSDARG00000052617	raver1	70	70.089	ENSCHIG00000006718	RAVER1	74	60.659	Capra_hircus
ENSDARG00000052617	raver1	59	73.016	ENSTSYG00000027107	RAVER1	100	51.767	Carlito_syrichta
ENSDARG00000052617	raver1	79	54.737	ENSCAPG00000002269	RAVER1	79	60.497	Cavia_aperea
ENSDARG00000052617	raver1	91	51.182	ENSCCAG00000031723	RAVER1	94	51.460	Cebus_capucinus
ENSDARG00000052617	raver1	70	69.643	ENSCATG00000043863	RAVER1	63	57.438	Cercocebus_atys
ENSDARG00000052617	raver1	91	51.105	ENSCLAG00000009336	RAVER1	66	59.118	Chinchilla_lanigera
ENSDARG00000052617	raver1	78	63.889	ENSCPBG00000005349	-	96	50.336	Chrysemys_picta_bellii
ENSDARG00000052617	raver1	70	69.643	ENSCANG00000008337	RAVER1	63	57.231	Colobus_angolensis_palliatus
ENSDARG00000052617	raver1	98	63.151	ENSCSEG00000021092	raver1	98	63.798	Cynoglossus_semilaevis
ENSDARG00000052617	raver1	100	63.870	ENSCVAG00000013971	raver1	98	64.779	Cyprinodon_variegatus
ENSDARG00000052617	raver1	70	58.482	ENSDNOG00000035742	-	61	58.427	Dasypus_novemcinctus
ENSDARG00000052617	raver1	70	69.643	ENSDORG00000010106	-	73	57.763	Dipodomys_ordii
ENSDARG00000052617	raver1	62	67.337	ENSETEG00000008201	-	56	67.337	Echinops_telfairi
ENSDARG00000052617	raver1	67	41.629	ENSEBUG00000003030	RAVER1	50	36.898	Eptatretus_burgeri
ENSDARG00000052617	raver1	70	69.643	ENSEASG00005010544	-	72	63.409	Equus_asinus_asinus
ENSDARG00000052617	raver1	70	69.196	ENSECAG00000024966	RAVER1	77	59.551	Equus_caballus
ENSDARG00000052617	raver1	98	69.167	ENSELUG00000023287	raver1	98	70.556	Esox_lucius
ENSDARG00000052617	raver1	76	66.939	ENSFCAG00000009435	RAVER1	74	60.784	Felis_catus
ENSDARG00000052617	raver1	91	49.313	ENSFDAG00000015113	RAVER1	78	58.847	Fukomys_damarensis
ENSDARG00000052617	raver1	89	71.233	ENSFHEG00000001653	raver1	92	72.760	Fundulus_heteroclitus
ENSDARG00000052617	raver1	93	63.955	ENSGMOG00000003649	raver1	98	64.566	Gadus_morhua
ENSDARG00000052617	raver1	70	44.298	ENSGALG00000050608	-	50	40.417	Gallus_gallus
ENSDARG00000052617	raver1	100	65.135	ENSGAFG00000015944	raver1	98	66.850	Gambusia_affinis
ENSDARG00000052617	raver1	73	85.532	ENSGACG00000013818	raver1	84	75.052	Gasterosteus_aculeatus
ENSDARG00000052617	raver1	89	57.461	ENSGAGG00000011748	-	96	59.465	Gopherus_agassizii
ENSDARG00000052617	raver1	89	76.471	ENSHBUG00000021210	raver1	98	63.151	Haplochromis_burtoni
ENSDARG00000052617	raver1	100	62.295	ENSHCOG00000000449	raver1	96	63.245	Hippocampus_comes
ENSDARG00000052617	raver1	98	74.059	ENSIPUG00000013153	raver1	98	75.174	Ictalurus_punctatus
ENSDARG00000052617	raver1	93	50.541	ENSSTOG00000003241	RAVER1	67	58.283	Ictidomys_tridecemlineatus
ENSDARG00000052617	raver1	93	51.018	ENSJJAG00000018219	-	76	60.793	Jaculus_jaculus
ENSDARG00000052617	raver1	100	67.571	ENSKMAG00000017355	raver1	98	67.769	Kryptolebias_marmoratus
ENSDARG00000052617	raver1	89	77.431	ENSLBEG00000008268	raver1	94	68.939	Labrus_bergylta
ENSDARG00000052617	raver1	86	49.713	ENSLACG00000005809	-	80	64.045	Latimeria_chalumnae
ENSDARG00000052617	raver1	98	60.392	ENSLOCG00000007500	raver1	98	60.471	Lepisosteus_oculatus
ENSDARG00000052617	raver1	74	86.000	ENSLAFG00000003664	-	95	62.500	Loxodonta_africana
ENSDARG00000052617	raver1	70	69.643	ENSMFAG00000037977	RAVER1	64	60.206	Macaca_fascicularis
ENSDARG00000052617	raver1	70	69.643	ENSMMUG00000014897	RAVER1	72	58.810	Macaca_mulatta
ENSDARG00000052617	raver1	70	69.643	ENSMNEG00000028390	RAVER1	63	57.438	Macaca_nemestrina
ENSDARG00000052617	raver1	70	69.643	ENSMLEG00000041959	RAVER1	63	56.996	Mandrillus_leucophaeus
ENSDARG00000052617	raver1	98	68.603	ENSMAMG00000012059	raver1	98	69.848	Mastacembelus_armatus
ENSDARG00000052617	raver1	100	65.986	ENSMZEG00005019002	raver1	98	68.508	Maylandia_zebra
ENSDARG00000052617	raver1	91	52.374	ENSMICG00000010326	RAVER1	96	53.431	Microcebus_murinus
ENSDARG00000052617	raver1	98	68.465	ENSMMOG00000012093	raver1	98	67.729	Mola_mola
ENSDARG00000052617	raver1	75	68.182	ENSMODG00000005584	-	87	51.580	Monodelphis_domestica
ENSDARG00000052617	raver1	100	66.667	ENSMALG00000016569	raver1	99	67.541	Monopterus_albus
ENSDARG00000052617	raver1	69	71.041	ENSMPUG00000006712	RAVER1	77	60.674	Mustela_putorius_furo
ENSDARG00000052617	raver1	91	51.989	ENSMLUG00000012328	RAVER1	96	52.774	Myotis_lucifugus
ENSDARG00000052617	raver1	70	67.857	ENSNGAG00000001260	-	81	57.230	Nannospalax_galili
ENSDARG00000052617	raver1	89	77.163	ENSNBRG00000010139	raver1	98	62.121	Neolamprologus_brichardi
ENSDARG00000052617	raver1	70	69.196	ENSNLEG00000012181	RAVER1	94	51.321	Nomascus_leucogenys
ENSDARG00000052617	raver1	85	50.740	ENSMEUG00000003281	-	80	64.045	Notamacropus_eugenii
ENSDARG00000052617	raver1	69	69.231	ENSODEG00000016260	RAVER1	74	60.398	Octodon_degus
ENSDARG00000052617	raver1	91	75.850	ENSONIG00000001559	raver1	100	68.095	Oreochromis_niloticus
ENSDARG00000052617	raver1	91	50.774	ENSOCUG00000020918	RAVER1	77	64.198	Oryctolagus_cuniculus
ENSDARG00000052617	raver1	100	65.353	ENSORLG00000005458	raver1	98	66.022	Oryzias_latipes
ENSDARG00000052617	raver1	100	66.213	ENSORLG00020004392	raver1	98	66.620	Oryzias_latipes_hni
ENSDARG00000052617	raver1	100	66.033	ENSORLG00015017222	raver1	98	66.298	Oryzias_latipes_hsok
ENSDARG00000052617	raver1	89	75.347	ENSOMEG00000023956	raver1	98	62.204	Oryzias_melastigma
ENSDARG00000052617	raver1	73	86.000	ENSOARG00000015886	RAVER1	70	86.000	Ovis_aries
ENSDARG00000052617	raver1	76	66.939	ENSPPRG00000009912	RAVER1	93	52.730	Panthera_pardus
ENSDARG00000052617	raver1	70	69.643	ENSPANG00000004122	RAVER1	94	51.460	Papio_anubis
ENSDARG00000052617	raver1	96	67.732	ENSPKIG00000015863	raver1	94	67.219	Paramormyrops_kingsleyae
ENSDARG00000052617	raver1	89	75.347	ENSPMGG00000001451	raver1	96	72.542	Periophthalmus_magnuspinnatus
ENSDARG00000052617	raver1	93	52.841	ENSPCIG00000018695	-	98	53.121	Phascolarctos_cinereus
ENSDARG00000052617	raver1	100	64.477	ENSPFOG00000007016	raver1	98	65.621	Poecilia_formosa
ENSDARG00000052617	raver1	89	73.103	ENSPLAG00000020793	raver1	97	64.620	Poecilia_latipinna
ENSDARG00000052617	raver1	100	64.722	ENSPMEG00000011220	raver1	98	66.575	Poecilia_mexicana
ENSDARG00000052617	raver1	89	73.448	ENSPREG00000006864	raver1	98	63.421	Poecilia_reticulata
ENSDARG00000052617	raver1	70	69.643	ENSPPYG00000010514	RAVER1	65	59.381	Pongo_abelii
ENSDARG00000052617	raver1	91	50.069	ENSPCOG00000026605	RAVER1	63	58.969	Propithecus_coquereli
ENSDARG00000052617	raver1	69	70.588	ENSPVAG00000003689	RAVER1	74	86.000	Pteropus_vampyrus
ENSDARG00000052617	raver1	89	76.471	ENSPNYG00000013284	raver1	98	65.097	Pundamilia_nyererei
ENSDARG00000052617	raver1	98	76.657	ENSPNAG00000015476	raver1	98	76.690	Pygocentrus_nattereri
ENSDARG00000052617	raver1	91	53.170	ENSRBIG00000034702	RAVER1	94	53.170	Rhinopithecus_bieti
ENSDARG00000052617	raver1	91	53.458	ENSRROG00000031186	RAVER1	94	53.170	Rhinopithecus_roxellana
ENSDARG00000052617	raver1	91	52.601	ENSSBOG00000023423	RAVER1	94	52.746	Saimiri_boliviensis_boliviensis
ENSDARG00000052617	raver1	86	52.584	ENSSHAG00000008181	-	90	53.394	Sarcophilus_harrisii
ENSDARG00000052617	raver1	82	75.746	ENSSFOG00015023666	raver1	90	75.746	Scleropages_formosus
ENSDARG00000052617	raver1	98	69.655	ENSSMAG00000004546	raver1	99	69.379	Scophthalmus_maximus
ENSDARG00000052617	raver1	98	70.124	ENSSDUG00000021063	raver1	98	71.369	Seriola_dumerili
ENSDARG00000052617	raver1	98	70.124	ENSSLDG00000014505	raver1	98	71.369	Seriola_lalandi_dorsalis
ENSDARG00000052617	raver1	98	69.199	ENSSPAG00000000688	raver1	98	70.442	Stegastes_partitus
ENSDARG00000052617	raver1	93	52.161	ENSSSCG00000013650	-	96	52.662	Sus_scrofa
ENSDARG00000052617	raver1	98	65.655	ENSTRUG00000025641	raver1	98	65.193	Takifugu_rubripes
ENSDARG00000052617	raver1	89	73.793	ENSTNIG00000018570	raver1	96	74.101	Tetraodon_nigroviridis
ENSDARG00000052617	raver1	91	50.621	ENSTTRG00000009552	RAVER1	65	58.727	Tursiops_truncatus
ENSDARG00000052617	raver1	93	52.595	ENSVVUG00000028976	RAVER1	96	52.514	Vulpes_vulpes
ENSDARG00000052617	raver1	90	52.786	ENSXETG00000011622	raver1	94	52.276	Xenopus_tropicalis
ENSDARG00000052617	raver1	100	65.400	ENSXCOG00000016368	raver1	98	67.127	Xiphophorus_couchianus
ENSDARG00000052617	raver1	100	65.583	ENSXMAG00000000217	raver1	98	67.265	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component