EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000052728 (Gene tree)
Gene ID: 406642
Gene Symbol: sltm
Alias: wu:fd12b08|zgc:65985
Full Name: SAFB-like%2C transcription modulator
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 27815 bases
Position: chr7:30532636-30560450
Accession: ZDB-GENE-040426-2647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000120316	RRM_5	PF13893.6	1.3e-08	1	1
ENSDARP00000115812	RRM_5	PF13893.6	1.1e-07	1	1
ENSDARP00000120316	RRM_1	PF00076.22	1.8e-11	1	1
ENSDARP00000115812	RRM_1	PF00076.22	1.1e-10	1	1
ENSDARP00000142810	SAP	PF02037.27	3.7e-11	1	1
ENSDARP00000115812	SAP	PF02037.27	5.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000142680	-	449	-	ENSDARP00000142810	142 (aa)	-	A0A1D5NSJ4
ENSDART00000173546	-	680	-	-	- (aa)	-	-
ENSDART00000139546	-	805	-	ENSDARP00000120316	269 (aa)	-	F1QCC1
ENSDART00000142723	-	1290	-	-	- (aa)	-	-
ENSDART00000142818	-	9342	-	ENSDARP00000115812	983 (aa)	-	F1Q6F9
ENSDART00000138298	-	740	-	-	- (aa)	-	-
ENSDART00000139134	-	445	-	-	- (aa)	-	-
ENSDART00000142480	-	595	-	ENSDARP00000142795	131 (aa)	-	A0A1D5NSI0
ENSDART00000182409	-	2002	-	ENSDARP00000154458	458 (aa)	-	A0A2R8QNZ9

Gene Model

Click here to download ENSDARG00000052728's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000052728's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000052728	sltm	67	46.809	ENSDARG00000020467	safb	58	34.861

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000052728	sltm	94	61.538	ENSG00000137776	SLTM	93	66.265	Homo_sapiens
ENSDARG00000052728	sltm	95	72.868	ENSAPOG00000012346	sltm	99	66.567	Acanthochromis_polyacanthus
ENSDARG00000052728	sltm	98	60.741	ENSAMEG00000004537	SLTM	83	56.958	Ailuropoda_melanoleuca
ENSDARG00000052728	sltm	95	72.266	ENSACIG00000001971	sltm	99	62.724	Amphilophus_citrinellus
ENSDARG00000052728	sltm	95	72.868	ENSAOCG00000002747	sltm	99	66.634	Amphiprion_ocellaris
ENSDARG00000052728	sltm	95	72.868	ENSAPEG00000012366	sltm	99	66.733	Amphiprion_percula
ENSDARG00000052728	sltm	99	64.956	ENSATEG00000003763	sltm	99	65.675	Anabas_testudineus
ENSDARG00000052728	sltm	94	65.000	ENSAPLG00000013025	SLTM	83	55.071	Anas_platyrhynchos
ENSDARG00000052728	sltm	94	61.538	ENSANAG00000037031	SLTM	68	77.273	Aotus_nancymaae
ENSDARG00000052728	sltm	95	72.481	ENSACLG00000002523	sltm	99	64.950	Astatotilapia_calliptera
ENSDARG00000052728	sltm	99	84.701	ENSAMXG00000012409	sltm	96	75.787	Astyanax_mexicanus
ENSDARG00000052728	sltm	94	61.154	ENSBTAG00000011319	SLTM	99	54.384	Bos_taurus
ENSDARG00000052728	sltm	94	61.154	ENSCJAG00000020395	SLTM	68	77.273	Callithrix_jacchus
ENSDARG00000052728	sltm	98	60.741	ENSCAFG00000016586	SLTM	99	53.736	Canis_familiaris
ENSDARG00000052728	sltm	98	60.741	ENSCAFG00020011253	SLTM	99	54.294	Canis_lupus_dingo
ENSDARG00000052728	sltm	94	62.308	ENSCHIG00000008780	SLTM	99	53.455	Capra_hircus
ENSDARG00000052728	sltm	94	60.769	ENSTSYG00000013581	SLTM	78	57.126	Carlito_syrichta
ENSDARG00000052728	sltm	96	59.108	ENSCAPG00000013326	SLTM	84	47.889	Cavia_aperea
ENSDARG00000052728	sltm	96	59.259	ENSCPOG00000026109	SLTM	76	58.685	Cavia_porcellus
ENSDARG00000052728	sltm	94	61.538	ENSCCAG00000022982	SLTM	68	77.273	Cebus_capucinus
ENSDARG00000052728	sltm	94	61.538	ENSCATG00000030254	SLTM	84	65.385	Cercocebus_atys
ENSDARG00000052728	sltm	94	61.154	ENSCLAG00000007160	SLTM	81	56.281	Chinchilla_lanigera
ENSDARG00000052728	sltm	94	61.538	ENSCSAG00000012004	SLTM	78	56.840	Chlorocebus_sabaeus
ENSDARG00000052728	sltm	87	61.224	ENSCHOG00000001125	SLTM	75	61.224	Choloepus_hoffmanni
ENSDARG00000052728	sltm	98	64.444	ENSCPBG00000006045	SLTM	99	55.080	Chrysemys_picta_bellii
ENSDARG00000052728	sltm	94	61.154	ENSCANG00000043731	SLTM	83	56.655	Colobus_angolensis_palliatus
ENSDARG00000052728	sltm	91	63.200	ENSCGRG00001022009	Sltm	78	55.542	Cricetulus_griseus_chok1gshd
ENSDARG00000052728	sltm	91	63.200	ENSCGRG00000014806	Sltm	83	55.608	Cricetulus_griseus_crigri
ENSDARG00000052728	sltm	94	67.063	ENSCSEG00000001618	sltm	94	59.654	Cynoglossus_semilaevis
ENSDARG00000052728	sltm	52	70.588	ENSCVAG00000005751	-	80	63.478	Cyprinodon_variegatus
ENSDARG00000052728	sltm	82	64.602	ENSDNOG00000002975	SLTM	80	54.084	Dasypus_novemcinctus
ENSDARG00000052728	sltm	82	67.699	ENSDORG00000007463	Sltm	68	65.714	Dipodomys_ordii
ENSDARG00000052728	sltm	94	61.628	ENSETEG00000008003	SLTM	83	47.826	Echinops_telfairi
ENSDARG00000052728	sltm	94	61.538	ENSEASG00005006792	SLTM	78	56.840	Equus_asinus_asinus
ENSDARG00000052728	sltm	94	61.538	ENSECAG00000011267	SLTM	97	51.590	Equus_caballus
ENSDARG00000052728	sltm	81	63.556	ENSEEUG00000000580	SLTM	73	63.525	Erinaceus_europaeus
ENSDARG00000052728	sltm	92	78.629	ENSELUG00000013388	sltm	71	77.907	Esox_lucius
ENSDARG00000052728	sltm	98	60.370	ENSFCAG00000004826	SLTM	99	53.973	Felis_catus
ENSDARG00000052728	sltm	94	65.000	ENSFALG00000012285	SLTM	99	51.940	Ficedula_albicollis
ENSDARG00000052728	sltm	98	60.370	ENSFDAG00000018075	SLTM	83	55.660	Fukomys_damarensis
ENSDARG00000052728	sltm	89	67.339	ENSFHEG00000014764	sltm	98	54.266	Fundulus_heteroclitus
ENSDARG00000052728	sltm	96	67.547	ENSGMOG00000015455	sltm	70	61.265	Gadus_morhua
ENSDARG00000052728	sltm	51	80.597	ENSGALG00000052242	-	58	80.597	Gallus_gallus
ENSDARG00000052728	sltm	95	67.300	ENSGACG00000015814	sltm	99	59.904	Gasterosteus_aculeatus
ENSDARG00000052728	sltm	98	64.444	ENSGAGG00000021279	SLTM	86	74.359	Gopherus_agassizii
ENSDARG00000052728	sltm	94	61.538	ENSGGOG00000015866	SLTM	74	77.273	Gorilla_gorilla
ENSDARG00000052728	sltm	95	72.481	ENSHBUG00000012461	sltm	99	64.752	Haplochromis_burtoni
ENSDARG00000052728	sltm	91	59.761	ENSHGLG00000015426	-	61	46.493	Heterocephalus_glaber_female
ENSDARG00000052728	sltm	94	60.769	ENSHGLG00000018512	-	79	55.477	Heterocephalus_glaber_female
ENSDARG00000052728	sltm	57	60.526	ENSHGLG00000000785	-	95	60.526	Heterocephalus_glaber_female
ENSDARG00000052728	sltm	90	60.081	ENSHGLG00100001757	-	99	46.377	Heterocephalus_glaber_male
ENSDARG00000052728	sltm	91	52.653	ENSHGLG00100002576	-	75	40.700	Heterocephalus_glaber_male
ENSDARG00000052728	sltm	94	61.154	ENSHGLG00100002674	-	79	51.237	Heterocephalus_glaber_male
ENSDARG00000052728	sltm	96	66.667	ENSHCOG00000003395	sltm	78	54.318	Hippocampus_comes
ENSDARG00000052728	sltm	99	80.899	ENSIPUG00000023201	sltm	92	74.975	Ictalurus_punctatus
ENSDARG00000052728	sltm	94	61.538	ENSSTOG00000000584	SLTM	83	56.537	Ictidomys_tridecemlineatus
ENSDARG00000052728	sltm	94	60.000	ENSJJAG00000006970	Sltm	80	56.066	Jaculus_jaculus
ENSDARG00000052728	sltm	96	65.251	ENSKMAG00000007570	sltm	99	58.210	Kryptolebias_marmoratus
ENSDARG00000052728	sltm	95	69.615	ENSLBEG00000025472	sltm	99	62.462	Labrus_bergylta
ENSDARG00000052728	sltm	94	66.288	ENSLACG00000005234	SLTM	99	53.904	Latimeria_chalumnae
ENSDARG00000052728	sltm	96	78.113	ENSLOCG00000013629	sltm	99	64.635	Lepisosteus_oculatus
ENSDARG00000052728	sltm	94	61.923	ENSLAFG00000017922	SLTM	70	64.659	Loxodonta_africana
ENSDARG00000052728	sltm	94	61.538	ENSMFAG00000033354	SLTM	84	65.385	Macaca_fascicularis
ENSDARG00000052728	sltm	98	60.370	ENSMMUG00000022200	SLTM	98	52.212	Macaca_mulatta
ENSDARG00000052728	sltm	94	61.538	ENSMNEG00000025105	SLTM	82	64.706	Macaca_nemestrina
ENSDARG00000052728	sltm	94	62.692	ENSMLEG00000043355	SLTM	84	65.385	Mandrillus_leucophaeus
ENSDARG00000052728	sltm	95	72.868	ENSMAMG00000021391	sltm	99	66.733	Mastacembelus_armatus
ENSDARG00000052728	sltm	95	72.481	ENSMZEG00005013839	sltm	99	64.950	Maylandia_zebra
ENSDARG00000052728	sltm	87	67.083	ENSMGAG00000005313	SLTM	82	55.307	Meleagris_gallopavo
ENSDARG00000052728	sltm	91	63.200	ENSMAUG00000014391	Sltm	98	52.433	Mesocricetus_auratus
ENSDARG00000052728	sltm	94	61.538	ENSMICG00000013069	SLTM	99	53.555	Microcebus_murinus
ENSDARG00000052728	sltm	91	63.200	ENSMOCG00000012419	Sltm	78	55.608	Microtus_ochrogaster
ENSDARG00000052728	sltm	96	64.981	ENSMMOG00000016470	sltm	99	60.949	Mola_mola
ENSDARG00000052728	sltm	99	54.043	ENSMODG00000008794	-	98	53.801	Monodelphis_domestica
ENSDARG00000052728	sltm	74	50.980	ENSMODG00000020311	-	65	40.557	Monodelphis_domestica
ENSDARG00000052728	sltm	99	66.400	ENSMALG00000021474	sltm	99	66.400	Monopterus_albus
ENSDARG00000052728	sltm	91	62.302	MGP_CAROLIEiJ_G0032404	Sltm	78	54.137	Mus_caroli
ENSDARG00000052728	sltm	91	62.000	ENSMUSG00000032212	Sltm	99	51.774	Mus_musculus
ENSDARG00000052728	sltm	91	62.000	MGP_PahariEiJ_G0015268	Sltm	78	54.374	Mus_pahari
ENSDARG00000052728	sltm	91	62.000	MGP_SPRETEiJ_G0033542	Sltm	78	54.374	Mus_spretus
ENSDARG00000052728	sltm	98	60.741	ENSMPUG00000004229	SLTM	87	57.008	Mustela_putorius_furo
ENSDARG00000052728	sltm	94	60.769	ENSMLUG00000000742	SLTM	83	55.112	Myotis_lucifugus
ENSDARG00000052728	sltm	94	61.923	ENSNGAG00000012328	Sltm	78	56.553	Nannospalax_galili
ENSDARG00000052728	sltm	90	74.590	ENSNBRG00000010183	sltm	99	60.558	Neolamprologus_brichardi
ENSDARG00000052728	sltm	98	60.370	ENSNLEG00000011440	SLTM	84	65.385	Nomascus_leucogenys
ENSDARG00000052728	sltm	91	60.558	ENSMEUG00000015230	SLTM	78	49.292	Notamacropus_eugenii
ENSDARG00000052728	sltm	95	61.303	ENSODEG00000017077	SLTM	81	54.405	Octodon_degus
ENSDARG00000052728	sltm	95	71.318	ENSONIG00000005838	sltm	99	64.145	Oreochromis_niloticus
ENSDARG00000052728	sltm	98	65.556	ENSOANG00000012311	-	69	66.667	Ornithorhynchus_anatinus
ENSDARG00000052728	sltm	98	60.370	ENSOCUG00000003327	SLTM	66	59.459	Oryctolagus_cuniculus
ENSDARG00000052728	sltm	95	65.234	ENSORLG00000008161	sltm	99	59.519	Oryzias_latipes
ENSDARG00000052728	sltm	95	65.234	ENSORLG00020008903	sltm	99	59.441	Oryzias_latipes_hni
ENSDARG00000052728	sltm	95	65.234	ENSORLG00015007103	sltm	99	59.359	Oryzias_latipes_hsok
ENSDARG00000052728	sltm	57	69.333	ENSOMEG00000002031	-	84	69.333	Oryzias_melastigma
ENSDARG00000052728	sltm	96	67.954	ENSOMEG00000002041	sltm	98	59.115	Oryzias_melastigma
ENSDARG00000052728	sltm	95	61.450	ENSPPAG00000029308	SLTM	84	65.385	Pan_paniscus
ENSDARG00000052728	sltm	94	61.538	ENSPPRG00000012400	SLTM	84	63.462	Panthera_pardus
ENSDARG00000052728	sltm	94	61.538	ENSPTIG00000021933	SLTM	78	56.722	Panthera_tigris_altaica
ENSDARG00000052728	sltm	94	61.538	ENSPTRG00000007121	SLTM	84	65.385	Pan_troglodytes
ENSDARG00000052728	sltm	94	61.538	ENSPANG00000017193	SLTM	84	65.385	Papio_anubis
ENSDARG00000052728	sltm	90	79.918	ENSPKIG00000022760	sltm	99	68.495	Paramormyrops_kingsleyae
ENSDARG00000052728	sltm	94	65.385	ENSPSIG00000005489	SLTM	97	52.141	Pelodiscus_sinensis
ENSDARG00000052728	sltm	99	64.207	ENSPMGG00000006037	sltm	100	54.930	Periophthalmus_magnuspinnatus
ENSDARG00000052728	sltm	91	63.200	ENSPEMG00000013263	Sltm	76	55.985	Peromyscus_maniculatus_bairdii
ENSDARG00000052728	sltm	91	51.351	ENSPMAG00000008206	sltm	73	41.779	Petromyzon_marinus
ENSDARG00000052728	sltm	94	64.231	ENSPCIG00000028356	SLTM	99	55.714	Phascolarctos_cinereus
ENSDARG00000052728	sltm	99	62.366	ENSPFOG00000004372	sltm	99	58.026	Poecilia_formosa
ENSDARG00000052728	sltm	91	68.293	ENSPLAG00000008000	sltm	99	58.425	Poecilia_latipinna
ENSDARG00000052728	sltm	91	68.699	ENSPMEG00000006047	sltm	99	57.895	Poecilia_mexicana
ENSDARG00000052728	sltm	91	69.106	ENSPREG00000023236	sltm	99	58.408	Poecilia_reticulata
ENSDARG00000052728	sltm	94	58.077	ENSPPYG00000006515	SLTM	78	55.595	Pongo_abelii
ENSDARG00000052728	sltm	99	47.418	ENSPCAG00000013482	SLTM	83	64.706	Procavia_capensis
ENSDARG00000052728	sltm	94	65.000	ENSPCOG00000010624	SLTM	99	51.989	Propithecus_coquereli
ENSDARG00000052728	sltm	94	61.538	ENSPVAG00000015056	SLTM	78	56.486	Pteropus_vampyrus
ENSDARG00000052728	sltm	95	72.481	ENSPNYG00000013893	sltm	99	64.851	Pundamilia_nyererei
ENSDARG00000052728	sltm	99	84.328	ENSPNAG00000020563	sltm	99	77.980	Pygocentrus_nattereri
ENSDARG00000052728	sltm	91	62.800	ENSRNOG00000054446	Sltm	78	55.083	Rattus_norvegicus
ENSDARG00000052728	sltm	94	61.538	ENSRBIG00000029226	SLTM	99	53.313	Rhinopithecus_bieti
ENSDARG00000052728	sltm	94	61.538	ENSRROG00000045301	SLTM	99	54.528	Rhinopithecus_roxellana
ENSDARG00000052728	sltm	94	61.538	ENSSBOG00000018883	SLTM	99	54.280	Saimiri_boliviensis_boliviensis
ENSDARG00000052728	sltm	94	64.231	ENSSHAG00000015395	SLTM	98	54.393	Sarcophilus_harrisii
ENSDARG00000052728	sltm	95	71.484	ENSSMAG00000000355	sltm	99	62.404	Scophthalmus_maximus
ENSDARG00000052728	sltm	99	65.385	ENSSDUG00000018134	sltm	99	65.779	Seriola_dumerili
ENSDARG00000052728	sltm	99	65.385	ENSSLDG00000013907	sltm	99	65.779	Seriola_lalandi_dorsalis
ENSDARG00000052728	sltm	95	72.973	ENSSPAG00000008130	sltm	99	64.313	Stegastes_partitus
ENSDARG00000052728	sltm	98	59.630	ENSSSCG00000004592	SLTM	99	53.998	Sus_scrofa
ENSDARG00000052728	sltm	94	65.385	ENSTGUG00000006017	SLTM	86	55.189	Taeniopygia_guttata
ENSDARG00000052728	sltm	94	66.008	ENSTRUG00000017767	sltm	89	56.279	Takifugu_rubripes
ENSDARG00000052728	sltm	57	62.667	ENSTRUG00000023480	-	51	62.667	Takifugu_rubripes
ENSDARG00000052728	sltm	94	66.275	ENSTNIG00000009334	sltm	99	51.758	Tetraodon_nigroviridis
ENSDARG00000052728	sltm	94	63.386	ENSTBEG00000000945	SLTM	86	66.667	Tupaia_belangeri
ENSDARG00000052728	sltm	94	61.154	ENSTTRG00000005246	SLTM	78	55.948	Tursiops_truncatus
ENSDARG00000052728	sltm	95	61.686	ENSUAMG00000025901	SLTM	99	57.434	Ursus_americanus
ENSDARG00000052728	sltm	98	60.741	ENSUMAG00000023678	SLTM	99	57.194	Ursus_maritimus
ENSDARG00000052728	sltm	94	61.538	ENSVPAG00000008606	SLTM	83	56.198	Vicugna_pacos
ENSDARG00000052728	sltm	98	60.741	ENSVVUG00000001450	SLTM	90	65.116	Vulpes_vulpes
ENSDARG00000052728	sltm	96	66.154	ENSXETG00000010840	sltm	99	49.278	Xenopus_tropicalis
ENSDARG00000052728	sltm	91	69.919	ENSXMAG00000014466	sltm	99	58.824	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process