EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000052897 (Gene tree)
Gene ID: 569210
Gene Symbol: atxn2
Alias: si:dkey-165i4.1
Full Name: ataxin 2
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 63756 bases
Position: chr5:41645479-41709234
Accession: ZDB-GENE-060526-217
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000078091	PAM2	PF07145.15	2.5e-06	1	1
ENSDARP00000078091	LsmAD	PF06741.13	1.4e-15	1	1
ENSDARP00000078091	SM-ATX	PF14438.6	8.3e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000083656	-	4204	XM_005165355	ENSDARP00000078091	1112 (aa)	XP_005165412	A2CF31

Gene Model

Click here to download ENSDARG00000052897's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000052897's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000052897	atxn2	74	49.527	ENSDARG00000011597	atxn2l	66	52.027

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000052897	atxn2	96	61.066	ENSG00000204842	ATXN2	97	75.000	Homo_sapiens
ENSDARG00000052897	atxn2	96	60.956	ENSAMEG00000013747	ATXN2	100	61.622	Ailuropoda_melanoleuca
ENSDARG00000052897	atxn2	93	65.578	ENSACIG00000004928	atxn2	100	65.840	Amphilophus_citrinellus
ENSDARG00000052897	atxn2	93	66.329	ENSATEG00000018587	atxn2	100	67.628	Anabas_testudineus
ENSDARG00000052897	atxn2	96	61.441	ENSAPLG00000008724	ATXN2	100	62.016	Anas_platyrhynchos
ENSDARG00000052897	atxn2	96	58.571	ENSACAG00000002419	ATXN2	100	59.732	Anolis_carolinensis
ENSDARG00000052897	atxn2	97	60.916	ENSANAG00000022522	ATXN2	100	60.340	Aotus_nancymaae
ENSDARG00000052897	atxn2	93	66.226	ENSACLG00000013359	atxn2	96	67.075	Astatotilapia_calliptera
ENSDARG00000052897	atxn2	93	85.294	ENSAMXG00000002342	atxn2	89	84.839	Astyanax_mexicanus
ENSDARG00000052897	atxn2	96	61.056	ENSBTAG00000022069	ATXN2	100	61.433	Bos_taurus
ENSDARG00000052897	atxn2	96	60.799	ENSCJAG00000011756	ATXN2	100	60.037	Callithrix_jacchus
ENSDARG00000052897	atxn2	96	60.705	ENSCAFG00000008606	ATXN2	82	61.290	Canis_familiaris
ENSDARG00000052897	atxn2	95	61.029	ENSCAFG00020017041	ATXN2	100	61.708	Canis_lupus_dingo
ENSDARG00000052897	atxn2	98	60.641	ENSCHIG00000012141	ATXN2	81	61.658	Capra_hircus
ENSDARG00000052897	atxn2	96	60.685	ENSTSYG00000002717	ATXN2	100	60.415	Carlito_syrichta
ENSDARG00000052897	atxn2	77	55.130	ENSCAPG00000013332	ATXN2	98	52.436	Cavia_aperea
ENSDARG00000052897	atxn2	97	61.704	ENSCPOG00000001390	ATXN2	96	60.999	Cavia_porcellus
ENSDARG00000052897	atxn2	98	67.932	ENSCCAG00000026267	ATXN2	100	60.251	Cebus_capucinus
ENSDARG00000052897	atxn2	96	60.795	ENSCATG00000017877	ATXN2	100	60.203	Cercocebus_atys
ENSDARG00000052897	atxn2	96	62.106	ENSCLAG00000009324	ATXN2	98	61.926	Chinchilla_lanigera
ENSDARG00000052897	atxn2	96	61.066	ENSCSAG00000002590	ATXN2	94	61.918	Chlorocebus_sabaeus
ENSDARG00000052897	atxn2	74	66.351	ENSCHOG00000004284	ATXN2	83	66.351	Choloepus_hoffmanni
ENSDARG00000052897	atxn2	96	60.775	ENSCANG00000042302	ATXN2	100	61.622	Colobus_angolensis_palliatus
ENSDARG00000052897	atxn2	96	58.627	ENSCGRG00001022603	Atxn2	84	58.565	Cricetulus_griseus_chok1gshd
ENSDARG00000052897	atxn2	97	60.682	ENSCGRG00000015823	Atxn2	99	60.592	Cricetulus_griseus_crigri
ENSDARG00000052897	atxn2	100	58.123	ENSCSEG00000018366	atxn2	100	76.833	Cynoglossus_semilaevis
ENSDARG00000052897	atxn2	93	77.439	ENSCVAG00000020160	atxn2	100	79.646	Cyprinodon_variegatus
ENSDARG00000052897	atxn2	96	60.614	ENSDNOG00000015696	ATXN2	100	59.937	Dasypus_novemcinctus
ENSDARG00000052897	atxn2	96	56.730	ENSDORG00000000808	Atxn2	99	57.233	Dipodomys_ordii
ENSDARG00000052897	atxn2	90	57.471	ENSETEG00000005224	ATXN2	77	57.088	Echinops_telfairi
ENSDARG00000052897	atxn2	97	61.006	ENSEASG00005012077	ATXN2	99	71.336	Equus_asinus_asinus
ENSDARG00000052897	atxn2	97	61.206	ENSECAG00000014347	ATXN2	80	61.609	Equus_caballus
ENSDARG00000052897	atxn2	68	70.588	ENSEEUG00000014635	-	70	70.588	Erinaceus_europaeus
ENSDARG00000052897	atxn2	97	73.670	ENSELUG00000019632	atxn2	99	77.810	Esox_lucius
ENSDARG00000052897	atxn2	96	60.850	ENSFCAG00000003178	ATXN2	100	60.111	Felis_catus
ENSDARG00000052897	atxn2	95	59.003	ENSFALG00000009001	ATXN2	100	59.871	Ficedula_albicollis
ENSDARG00000052897	atxn2	96	61.136	ENSFDAG00000020942	ATXN2	100	61.982	Fukomys_damarensis
ENSDARG00000052897	atxn2	88	76.119	ENSFHEG00000019561	atxn2	98	78.324	Fundulus_heteroclitus
ENSDARG00000052897	atxn2	88	70.748	ENSGMOG00000007412	atxn2	92	70.628	Gadus_morhua
ENSDARG00000052897	atxn2	96	56.989	ENSGALG00000004625	ATXN2	100	57.054	Gallus_gallus
ENSDARG00000052897	atxn2	95	68.194	ENSGACG00000006295	atxn2	100	70.421	Gasterosteus_aculeatus
ENSDARG00000052897	atxn2	95	54.537	ENSGAGG00000005014	ATXN2	100	53.142	Gopherus_agassizii
ENSDARG00000052897	atxn2	95	61.800	ENSGGOG00000002137	ATXN2	100	62.167	Gorilla_gorilla
ENSDARG00000052897	atxn2	96	59.711	ENSHGLG00000009812	ATXN2	85	60.484	Heterocephalus_glaber_female
ENSDARG00000052897	atxn2	96	61.136	ENSHGLG00100019351	ATXN2	100	61.892	Heterocephalus_glaber_male
ENSDARG00000052897	atxn2	96	61.407	ENSSTOG00000000978	ATXN2	96	61.424	Ictidomys_tridecemlineatus
ENSDARG00000052897	atxn2	55	60.870	ENSLBEG00000017484	atxn2	95	61.648	Labrus_bergylta
ENSDARG00000052897	atxn2	100	62.653	ENSLACG00000012531	ATXN2	100	64.170	Latimeria_chalumnae
ENSDARG00000052897	atxn2	99	70.177	ENSLOCG00000007880	atxn2	99	70.000	Lepisosteus_oculatus
ENSDARG00000052897	atxn2	97	60.737	ENSLAFG00000007416	ATXN2	100	61.670	Loxodonta_africana
ENSDARG00000052897	atxn2	96	60.795	ENSMFAG00000000374	ATXN2	100	60.503	Macaca_fascicularis
ENSDARG00000052897	atxn2	95	61.213	ENSMMUG00000002226	ATXN2	100	62.075	Macaca_mulatta
ENSDARG00000052897	atxn2	96	60.795	ENSMNEG00000035588	ATXN2	100	60.503	Macaca_nemestrina
ENSDARG00000052897	atxn2	96	60.866	ENSMLEG00000024324	ATXN2	100	61.712	Mandrillus_leucophaeus
ENSDARG00000052897	atxn2	96	60.791	ENSMGAG00000005288	ATXN2	100	61.215	Meleagris_gallopavo
ENSDARG00000052897	atxn2	62	54.507	ENSMAUG00000008223	-	100	54.225	Mesocricetus_auratus
ENSDARG00000052897	atxn2	95	61.892	ENSMICG00000013541	ATXN2	100	62.259	Microcebus_murinus
ENSDARG00000052897	atxn2	82	60.361	ENSMOCG00000005219	Atxn2	96	60.149	Microtus_ochrogaster
ENSDARG00000052897	atxn2	100	60.402	ENSMMOG00000013189	atxn2	100	66.726	Mola_mola
ENSDARG00000052897	atxn2	97	61.215	ENSMODG00000012221	ATXN2	84	61.601	Monodelphis_domestica
ENSDARG00000052897	atxn2	96	60.162	MGP_CAROLIEiJ_G0027692	Atxn2	95	60.000	Mus_caroli
ENSDARG00000052897	atxn2	96	60.740	ENSMUSG00000042605	Atxn2	96	59.365	Mus_musculus
ENSDARG00000052897	atxn2	83	69.697	MGP_PahariEiJ_G0024272	Atxn2	100	53.566	Mus_pahari
ENSDARG00000052897	atxn2	96	60.740	MGP_SPRETEiJ_G0028690	Atxn2	96	59.577	Mus_spretus
ENSDARG00000052897	atxn2	96	59.603	ENSMPUG00000002212	ATXN2	100	60.270	Mustela_putorius_furo
ENSDARG00000052897	atxn2	97	59.766	ENSMLUG00000015559	ATXN2	100	60.737	Myotis_lucifugus
ENSDARG00000052897	atxn2	93	67.793	ENSNBRG00000015794	atxn2	98	68.978	Neolamprologus_brichardi
ENSDARG00000052897	atxn2	98	60.250	ENSNLEG00000000484	ATXN2	100	60.503	Nomascus_leucogenys
ENSDARG00000052897	atxn2	82	72.727	ENSMEUG00000012244	-	85	72.727	Notamacropus_eugenii
ENSDARG00000052897	atxn2	95	58.235	ENSOPRG00000014599	ATXN2	100	58.583	Ochotona_princeps
ENSDARG00000052897	atxn2	95	62.110	ENSODEG00000010798	ATXN2	100	61.574	Octodon_degus
ENSDARG00000052897	atxn2	96	67.631	ENSONIG00000014521	atxn2	98	69.581	Oreochromis_niloticus
ENSDARG00000052897	atxn2	83	60.499	ENSOANG00000004796	ATXN2	100	61.746	Ornithorhynchus_anatinus
ENSDARG00000052897	atxn2	96	59.946	ENSOCUG00000002855	ATXN2	70	60.413	Oryctolagus_cuniculus
ENSDARG00000052897	atxn2	99	58.615	ENSORLG00000003606	atxn2	100	58.421	Oryzias_latipes
ENSDARG00000052897	atxn2	96	61.372	ENSOGAG00000000609	ATXN2	88	60.392	Otolemur_garnettii
ENSDARG00000052897	atxn2	97	61.151	ENSOARG00000018223	ATXN2	100	61.366	Ovis_aries
ENSDARG00000052897	atxn2	97	60.916	ENSPPAG00000028043	ATXN2	100	62.167	Pan_paniscus
ENSDARG00000052897	atxn2	96	60.940	ENSPPRG00000003573	ATXN2	100	60.203	Panthera_pardus
ENSDARG00000052897	atxn2	96	60.740	ENSPTIG00000021122	ATXN2	100	61.983	Panthera_tigris_altaica
ENSDARG00000052897	atxn2	98	60.303	ENSPTRG00000029540	ATXN2	100	62.075	Pan_troglodytes
ENSDARG00000052897	atxn2	95	60.985	ENSPANG00000017168	ATXN2	100	60.503	Papio_anubis
ENSDARG00000052897	atxn2	97	66.848	ENSPKIG00000023134	atxn2	100	66.813	Paramormyrops_kingsleyae
ENSDARG00000052897	atxn2	96	60.450	ENSPSIG00000002353	-	100	61.386	Pelodiscus_sinensis
ENSDARG00000052897	atxn2	95	63.612	ENSPMGG00000005074	atxn2	100	65.186	Periophthalmus_magnuspinnatus
ENSDARG00000052897	atxn2	82	60.361	ENSPEMG00000015340	Atxn2	96	59.894	Peromyscus_maniculatus_bairdii
ENSDARG00000052897	atxn2	72	50.141	ENSPMAG00000004603	atxn2	76	53.035	Petromyzon_marinus
ENSDARG00000052897	atxn2	61	59.169	ENSPCIG00000006165	-	94	71.038	Phascolarctos_cinereus
ENSDARG00000052897	atxn2	91	73.265	ENSPFOG00000005857	atxn2	99	63.901	Poecilia_formosa
ENSDARG00000052897	atxn2	95	69.035	ENSPREG00000014825	atxn2	99	68.445	Poecilia_reticulata
ENSDARG00000052897	atxn2	96	60.885	ENSPPYG00000004963	ATXN2	86	61.649	Pongo_abelii
ENSDARG00000052897	atxn2	60	54.728	ENSPCAG00000004216	-	51	53.582	Procavia_capensis
ENSDARG00000052897	atxn2	94	60.721	ENSPCOG00000022031	ATXN2	100	61.355	Propithecus_coquereli
ENSDARG00000052897	atxn2	84	70.820	ENSPVAG00000013179	ATXN2	72	70.570	Pteropus_vampyrus
ENSDARG00000052897	atxn2	97	59.481	ENSRNOG00000001256	Atxn2	99	59.786	Rattus_norvegicus
ENSDARG00000052897	atxn2	96	58.583	ENSRBIG00000039212	ATXN2	100	60.111	Rhinopithecus_bieti
ENSDARG00000052897	atxn2	96	60.775	ENSRROG00000031170	ATXN2	100	60.413	Rhinopithecus_roxellana
ENSDARG00000052897	atxn2	95	59.838	ENSSBOG00000031563	ATXN2	100	60.430	Saimiri_boliviensis_boliviensis
ENSDARG00000052897	atxn2	97	61.366	ENSSHAG00000007304	ATXN2	100	61.276	Sarcophilus_harrisii
ENSDARG00000052897	atxn2	95	65.009	ENSSFOG00015017229	atxn2	100	64.365	Scleropages_formosus
ENSDARG00000052897	atxn2	99	62.844	ENSSMAG00000004627	atxn2	100	70.868	Scophthalmus_maximus
ENSDARG00000052897	atxn2	100	59.948	ENSSDUG00000001223	atxn2	100	80.636	Seriola_dumerili
ENSDARG00000052897	atxn2	93	68.034	ENSSLDG00000019837	atxn2	100	68.411	Seriola_lalandi_dorsalis
ENSDARG00000052897	atxn2	68	71.193	ENSSARG00000006291	ATXN2	73	72.308	Sorex_araneus
ENSDARG00000052897	atxn2	95	61.559	ENSSPUG00000010317	ATXN2	92	61.831	Sphenodon_punctatus
ENSDARG00000052897	atxn2	93	66.976	ENSSPAG00000000377	atxn2	99	67.650	Stegastes_partitus
ENSDARG00000052897	atxn2	96	61.066	ENSSSCG00000009834	ATXN2	94	70.513	Sus_scrofa
ENSDARG00000052897	atxn2	99	66.462	ENSTRUG00000016801	atxn2	100	67.354	Takifugu_rubripes
ENSDARG00000052897	atxn2	84	71.538	ENSTBEG00000001985	ATXN2	89	71.538	Tupaia_belangeri
ENSDARG00000052897	atxn2	85	64.632	ENSTTRG00000000952	ATXN2	76	64.779	Tursiops_truncatus
ENSDARG00000052897	atxn2	96	60.850	ENSUAMG00000025295	ATXN2	94	61.345	Ursus_americanus
ENSDARG00000052897	atxn2	95	61.029	ENSUMAG00000007315	ATXN2	100	61.708	Ursus_maritimus
ENSDARG00000052897	atxn2	89	59.888	ENSVPAG00000005940	ATXN2	93	60.987	Vicugna_pacos
ENSDARG00000052897	atxn2	95	61.029	ENSVVUG00000016107	ATXN2	100	61.708	Vulpes_vulpes
ENSDARG00000052897	atxn2	95	59.199	ENSXETG00000020912	atxn2	100	59.182	Xenopus_tropicalis
ENSDARG00000052897	atxn2	55	60.674	ENSXCOG00000010001	atxn2	99	62.400	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:0010603	regulation of cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0034063	stress granule assembly	21873635.	IBA	Process