EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053021 (Gene tree)
Gene ID: 563249
Gene Symbol: grsf1
Alias: wu:fb62c04|zgc:153305
Full Name: G-rich RNA sequence binding factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 6992 bases
Position: chr5:42943972-42950963
Accession: ZDB-GENE-060825-196
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124123	RRM_1	PF00076.22	4.3e-25	1	2
ENSDARP00000124123	RRM_1	PF00076.22	4.3e-25	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149868	-	1451	XM_005165334	ENSDARP00000124123	403 (aa)	XP_005165391	F8W4V6
ENSDART00000149549	-	885	-	ENSDARP00000125086	145 (aa)	-	F8W5I2

Gene Model

Click here to download ENSDARG00000053021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053021's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000053021	grsf1	67	38.384	ENSDARG00000079717	rbm12b	65	38.384
ENSDARG00000053021	grsf1	70	38.318	ENSDARG00000040881	hnrnph1	80	38.318
ENSDARG00000053021	grsf1	72	51.190	ENSDARG00000039466	hnrnph3	95	44.800
ENSDARG00000053021	grsf1	69	33.824	ENSDARG00000018814	esrp2	55	33.824
ENSDARG00000053021	grsf1	70	39.385	ENSDARG00000005551	hnrnph1l	80	39.077

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053021	grsf1	96	48.000	ENSAPOG00000012487	grsf1	100	48.000	Acanthochromis_polyacanthus
ENSDARG00000053021	grsf1	94	47.396	ENSACIG00000005871	grsf1	98	47.396	Amphilophus_citrinellus
ENSDARG00000053021	grsf1	96	46.517	ENSAOCG00000017462	-	100	46.517	Amphiprion_ocellaris
ENSDARG00000053021	grsf1	96	45.833	ENSAPEG00000007240	-	100	45.833	Amphiprion_percula
ENSDARG00000053021	grsf1	95	44.917	ENSATEG00000007185	grsf1	99	44.917	Anabas_testudineus
ENSDARG00000053021	grsf1	93	47.089	ENSACLG00000003685	-	98	47.089	Astatotilapia_calliptera
ENSDARG00000053021	grsf1	94	50.804	ENSAMXG00000012270	grsf1	99	50.804	Astyanax_mexicanus
ENSDARG00000053021	grsf1	95	45.955	ENSCSEG00000019209	-	98	45.955	Cynoglossus_semilaevis
ENSDARG00000053021	grsf1	79	51.829	ENSCVAG00000004476	grsf1	87	51.829	Cyprinodon_variegatus
ENSDARG00000053021	grsf1	96	37.170	ENSFHEG00000013358	-	99	37.650	Fundulus_heteroclitus
ENSDARG00000053021	grsf1	73	56.771	ENSGMOG00000014047	grsf1	81	56.771	Gadus_morhua
ENSDARG00000053021	grsf1	79	50.299	ENSGAFG00000004496	grsf1	83	50.299	Gambusia_affinis
ENSDARG00000053021	grsf1	71	47.692	ENSGACG00000014447	grsf1	97	47.692	Gasterosteus_aculeatus
ENSDARG00000053021	grsf1	94	46.985	ENSHBUG00000006284	grsf1	98	46.985	Haplochromis_burtoni
ENSDARG00000053021	grsf1	89	44.800	ENSHCOG00000007715	-	95	44.800	Hippocampus_comes
ENSDARG00000053021	grsf1	95	50.384	ENSIPUG00000010533	grsf1	100	50.384	Ictalurus_punctatus
ENSDARG00000053021	grsf1	77	50.765	ENSKMAG00000004528	grsf1	78	50.760	Kryptolebias_marmoratus
ENSDARG00000053021	grsf1	72	41.234	ENSLBEG00000018100	grsf1	97	41.234	Labrus_bergylta
ENSDARG00000053021	grsf1	86	48.800	ENSMAMG00000002627	grsf1	94	48.800	Mastacembelus_armatus
ENSDARG00000053021	grsf1	93	47.342	ENSMZEG00005020633	-	98	47.342	Maylandia_zebra
ENSDARG00000053021	grsf1	75	52.475	ENSMMOG00000014231	grsf1	88	50.755	Mola_mola
ENSDARG00000053021	grsf1	78	50.882	ENSMALG00000000251	grsf1	83	50.882	Monopterus_albus
ENSDARG00000053021	grsf1	93	46.329	ENSNBRG00000017774	grsf1	95	46.329	Neolamprologus_brichardi
ENSDARG00000053021	grsf1	77	53.191	ENSONIG00000014119	grsf1	99	47.009	Oreochromis_niloticus
ENSDARG00000053021	grsf1	96	44.250	ENSORLG00000030211	grsf1	99	44.250	Oryzias_latipes
ENSDARG00000053021	grsf1	77	49.541	ENSORLG00020014383	grsf1	84	49.846	Oryzias_latipes_hni
ENSDARG00000053021	grsf1	96	43.860	ENSORLG00015006520	grsf1	99	43.860	Oryzias_latipes_hsok
ENSDARG00000053021	grsf1	78	49.702	ENSOMEG00000009181	grsf1	85	51.064	Oryzias_melastigma
ENSDARG00000053021	grsf1	78	51.057	ENSPKIG00000019432	grsf1	80	51.057	Paramormyrops_kingsleyae
ENSDARG00000053021	grsf1	81	49.858	ENSPMGG00000013654	grsf1	96	49.858	Periophthalmus_magnuspinnatus
ENSDARG00000053021	grsf1	93	43.350	ENSPFOG00000006122	grsf1	98	44.335	Poecilia_formosa
ENSDARG00000053021	grsf1	93	44.279	ENSPLAG00000020977	grsf1	98	44.776	Poecilia_latipinna
ENSDARG00000053021	grsf1	93	44.089	ENSPMEG00000012485	grsf1	98	44.581	Poecilia_mexicana
ENSDARG00000053021	grsf1	93	43.210	ENSPREG00000013383	grsf1	98	43.176	Poecilia_reticulata
ENSDARG00000053021	grsf1	93	47.570	ENSPNYG00000005379	grsf1	97	47.570	Pundamilia_nyererei
ENSDARG00000053021	grsf1	96	51.637	ENSPNAG00000014912	grsf1	99	51.637	Pygocentrus_nattereri
ENSDARG00000053021	grsf1	81	48.529	ENSSFOG00015014620	grsf1	86	48.529	Scleropages_formosus
ENSDARG00000053021	grsf1	77	48.297	ENSSMAG00000014181	grsf1	70	48.297	Scophthalmus_maximus
ENSDARG00000053021	grsf1	96	47.704	ENSSDUG00000009397	-	98	53.074	Seriola_dumerili
ENSDARG00000053021	grsf1	96	47.607	ENSSLDG00000025494	grsf1	98	50.161	Seriola_lalandi_dorsalis
ENSDARG00000053021	grsf1	96	45.297	ENSSPAG00000023296	grsf1	99	45.297	Stegastes_partitus
ENSDARG00000053021	grsf1	79	51.840	ENSTRUG00000015354	grsf1	84	51.840	Takifugu_rubripes
ENSDARG00000053021	grsf1	78	49.675	ENSTNIG00000015350	-	99	50.000	Tetraodon_nigroviridis
ENSDARG00000053021	grsf1	79	48.503	ENSXMAG00000029710	grsf1	84	48.503	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006396	RNA processing	-	IEA	Process