EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053101 (Gene tree)
Gene ID: 406810
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8652 bases
Position: chr2:45655294-45663945
Accession: ZDB-GENE-040426-2878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000069565	PRP38	PF03371.15	2.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000131872	-	1229	-	ENSDARP00000112649	172 (aa)	-	E9QD55
ENSDART00000137126	-	731	-	-	- (aa)	-	-
ENSDART00000133598	-	777	-	-	- (aa)	-	-
ENSDART00000135665	-	777	-	-	- (aa)	-	-
ENSDART00000075080	-	2188	XM_005171371	ENSDARP00000069565	501 (aa)	XP_005171428	F1Q7F0

Gene Model

Click here to download ENSDARG00000053101's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053101's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053101	prpf38b	95	89.634	ENSAPOG00000012791	-	97	69.309	Acanthochromis_polyacanthus
ENSDARG00000053101	prpf38b	95	89.634	ENSAPOG00000005297	prpf38b	97	69.309	Acanthochromis_polyacanthus
ENSDARG00000053101	prpf38b	95	89.634	ENSAOCG00000012675	prpf38b	89	68.902	Amphiprion_ocellaris
ENSDARG00000053101	prpf38b	96	89.091	ENSAPEG00000010974	prpf38b	94	89.634	Amphiprion_percula
ENSDARG00000053101	prpf38b	90	93.506	ENSACLG00000001712	prpf38b	98	69.512	Astatotilapia_calliptera
ENSDARG00000053101	prpf38b	95	89.634	ENSFHEG00000002861	prpf38b	97	65.988	Fundulus_heteroclitus
ENSDARG00000053101	prpf38b	95	89.024	ENSGACG00000015154	prpf38b	98	69.512	Gasterosteus_aculeatus
ENSDARG00000053101	prpf38b	95	89.634	ENSHBUG00000022496	prpf38b	98	69.715	Haplochromis_burtoni
ENSDARG00000053101	prpf38b	95	90.244	ENSIPUG00000014942	prpf38b	99	70.935	Ictalurus_punctatus
ENSDARG00000053101	prpf38b	96	89.091	ENSLBEG00000024500	prpf38b	90	89.091	Labrus_bergylta
ENSDARG00000053101	prpf38b	95	89.024	ENSMAMG00000010641	prpf38b	87	89.024	Mastacembelus_armatus
ENSDARG00000053101	prpf38b	90	93.506	ENSMZEG00005025536	prpf38b	98	69.512	Maylandia_zebra
ENSDARG00000053101	prpf38b	95	89.634	ENSPNYG00000007625	prpf38b	98	69.715	Pundamilia_nyererei
ENSDARG00000053101	prpf38b	95	89.634	ENSSPAG00000023160	-	97	67.611	Stegastes_partitus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071011	precatalytic spliceosome	21873635.	IBA	Component