EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053165 (Gene tree)
Gene ID: 568840
Gene Symbol: zgc:113377
Alias: -
Full Name: zgc:113377
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12021 bases
Position: chr17:50478455-50490475
Accession: ZDB-GENE-050913-148
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	1	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	2	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	3	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	4	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	5	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	6	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	7	8
ENSDARP00000069644	zf-C2H2	PF00096.26	3.6e-49	8	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	1	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	2	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	3	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	4	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	5	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	6	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	7	8
ENSDARP00000097007	zf-C2H2	PF00096.26	3.6e-49	8	8
ENSDARP00000069644	zf-met	PF12874.7	3e-06	1	2
ENSDARP00000069644	zf-met	PF12874.7	3e-06	2	2
ENSDARP00000097007	zf-met	PF12874.7	3e-06	1	2
ENSDARP00000097007	zf-met	PF12874.7	3e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000075159	-	1745	XM_009293312	ENSDARP00000069644	315 (aa)	XP_009291587	F1Q5S4
ENSDART00000106229	-	948	-	ENSDARP00000097007	315 (aa)	-	F1Q5S4

Gene Model

Click here to download ENSDARG00000053165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053165's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000053165	zgc:113377	100	54.000	ENSDARG00000099890	CU207221.2	99	54.054
ENSDARG00000053165	zgc:113377	79	61.062	ENSDARG00000098923	zgc:173577	95	61.062
ENSDARG00000053165	zgc:113377	80	63.492	ENSDARG00000096851	znf1143	100	63.492
ENSDARG00000053165	zgc:113377	80	60.853	ENSDARG00000102411	CR847850.1	97	60.853
ENSDARG00000053165	zgc:113377	99	49.215	ENSDARG00000101093	zgc:162971	98	49.215
ENSDARG00000053165	zgc:113377	91	51.712	ENSDARG00000111899	zgc:171435	89	51.712
ENSDARG00000053165	zgc:113377	80	61.633	ENSDARG00000090740	zmp:0000001003	100	61.633
ENSDARG00000053165	zgc:113377	80	62.281	ENSDARG00000106565	CABZ01066720.1	91	62.281
ENSDARG00000053165	zgc:113377	80	60.811	ENSDARG00000115737	AL954741.2	100	60.811
ENSDARG00000053165	zgc:113377	82	58.755	ENSDARG00000098248	CABZ01081730.1	90	58.755
ENSDARG00000053165	zgc:113377	100	48.410	ENSDARG00000112141	znf1169	84	48.410
ENSDARG00000053165	zgc:113377	80	63.959	ENSDARG00000102401	znf1001	97	63.959
ENSDARG00000053165	zgc:113377	80	61.674	ENSDARG00000105074	BX000701.2	95	61.674
ENSDARG00000053165	zgc:113377	80	72.222	ENSDARG00000094484	si:ch211-162i8.4	98	72.222
ENSDARG00000053165	zgc:113377	79	61.504	ENSDARG00000103530	zgc:113102	95	61.504
ENSDARG00000053165	zgc:113377	80	71.204	ENSDARG00000069869	zgc:113030	99	71.204
ENSDARG00000053165	zgc:113377	80	57.895	ENSDARG00000101463	si:dkey-176f19.1	99	53.903
ENSDARG00000053165	zgc:113377	80	62.400	ENSDARG00000099731	CABZ01066719.1	93	62.400
ENSDARG00000053165	zgc:113377	100	54.603	ENSDARG00000100803	zgc:173517	100	54.603
ENSDARG00000053165	zgc:113377	100	56.098	ENSDARG00000101694	znf1184	94	56.098
ENSDARG00000053165	zgc:113377	90	56.327	ENSDARG00000099618	si:dkey-1b17.6	100	56.327
ENSDARG00000053165	zgc:113377	100	53.571	ENSDARG00000111506	BX470259.1	97	52.396
ENSDARG00000053165	zgc:113377	80	61.947	ENSDARG00000099172	BX000701.1	90	61.947
ENSDARG00000053165	zgc:113377	80	63.745	ENSDARG00000088051	AL935044.1	100	63.745
ENSDARG00000053165	zgc:113377	100	48.223	ENSDARG00000102678	znf1181	89	50.000
ENSDARG00000053165	zgc:113377	100	57.798	ENSDARG00000105056	znf45l	100	57.798
ENSDARG00000053165	zgc:113377	99	51.399	ENSDARG00000101044	si:ch73-138e16.6	96	51.399
ENSDARG00000053165	zgc:113377	80	63.959	ENSDARG00000115857	znf1001	97	63.959
ENSDARG00000053165	zgc:113377	100	56.311	ENSDARG00000078281	zgc:173575	100	56.311
ENSDARG00000053165	zgc:113377	95	52.525	ENSDARG00000078814	si:dkey-34m19.3	94	50.685
ENSDARG00000053165	zgc:113377	100	59.474	ENSDARG00000104065	znf1154	97	59.474
ENSDARG00000053165	zgc:113377	100	58.261	ENSDARG00000092605	znf1003	94	58.261
ENSDARG00000053165	zgc:113377	100	56.934	ENSDARG00000089947	BX005085.1	99	56.934
ENSDARG00000053165	zgc:113377	93	60.664	ENSDARG00000073821	znf1177	75	60.664
ENSDARG00000053165	zgc:113377	99	58.000	ENSDARG00000103954	znf1152	97	58.000
ENSDARG00000053165	zgc:113377	89	53.414	ENSDARG00000091679	FO704858.1	99	53.414
ENSDARG00000053165	zgc:113377	79	64.706	ENSDARG00000103777	znf1001	99	64.706
ENSDARG00000053165	zgc:113377	80	66.368	ENSDARG00000099917	znf1005	95	66.368
ENSDARG00000053165	zgc:113377	81	54.483	ENSDARG00000116814	CU570894.2	99	65.263
ENSDARG00000053165	zgc:113377	100	51.282	ENSDARG00000113011	zgc:113102	100	60.185
ENSDARG00000053165	zgc:113377	100	68.712	ENSDARG00000100587	zgc:113886	99	68.712
ENSDARG00000053165	zgc:113377	100	57.143	ENSDARG00000109703	FO834825.1	98	55.556
ENSDARG00000053165	zgc:113377	100	50.000	ENSDARG00000098613	si:dkey-15h8.16	90	50.000
ENSDARG00000053165	zgc:113377	100	58.559	ENSDARG00000100361	znf1174	89	58.559
ENSDARG00000053165	zgc:113377	100	70.833	ENSDARG00000093378	si:ch211-235i11.5	99	70.833
ENSDARG00000053165	zgc:113377	99	61.988	ENSDARG00000100882	znf1154	91	61.988
ENSDARG00000053165	zgc:113377	80	51.383	ENSDARG00000101562	znf1014	86	51.383
ENSDARG00000053165	zgc:113377	97	66.400	ENSDARG00000111465	znf1104	92	61.404
ENSDARG00000053165	zgc:113377	80	47.826	ENSDARG00000098898	si:ch211-255f4.2	97	51.504
ENSDARG00000053165	zgc:113377	100	58.800	ENSDARG00000088507	znf982	100	53.082
ENSDARG00000053165	zgc:113377	100	63.889	ENSDARG00000098021	si:dkey-111k8.2	100	62.948
ENSDARG00000053165	zgc:113377	100	60.185	ENSDARG00000094736	znf1157	98	60.185
ENSDARG00000053165	zgc:113377	90	52.191	ENSDARG00000110710	CU210890.1	96	52.191
ENSDARG00000053165	zgc:113377	100	53.412	ENSDARG00000097521	si:dkey-111k8.5	100	53.412
ENSDARG00000053165	zgc:113377	82	69.058	ENSDARG00000077712	zgc:113886	99	69.058

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053165	zgc:113377	98	43.450	ENSACIG00000000360	si:ch211-241b2.1	97	43.450	Amphilophus_citrinellus
ENSDARG00000053165	zgc:113377	80	45.294	ENSACIG00000007882	-	73	45.294	Amphilophus_citrinellus
ENSDARG00000053165	zgc:113377	80	46.667	ENSACIG00000008886	znf1164	87	46.667	Amphilophus_citrinellus
ENSDARG00000053165	zgc:113377	100	44.000	ENSATEG00000008683	si:ch211-241b2.1	90	44.000	Anabas_testudineus
ENSDARG00000053165	zgc:113377	99	44.915	ENSATEG00000008667	-	79	44.915	Anabas_testudineus
ENSDARG00000053165	zgc:113377	80	44.444	ENSACLG00000017449	-	58	44.444	Astatotilapia_calliptera
ENSDARG00000053165	zgc:113377	80	50.888	ENSACLG00000024670	-	94	50.888	Astatotilapia_calliptera
ENSDARG00000053165	zgc:113377	80	44.767	ENSACLG00000000521	-	93	44.767	Astatotilapia_calliptera
ENSDARG00000053165	zgc:113377	89	52.105	ENSAMXG00000041650	-	97	52.105	Astyanax_mexicanus
ENSDARG00000053165	zgc:113377	80	55.172	ENSAMXG00000043291	-	64	55.172	Astyanax_mexicanus
ENSDARG00000053165	zgc:113377	97	48.276	ENSAMXG00000029660	-	66	39.617	Astyanax_mexicanus
ENSDARG00000053165	zgc:113377	97	50.439	ENSAMXG00000035349	-	55	50.439	Astyanax_mexicanus
ENSDARG00000053165	zgc:113377	80	47.619	ENSCSEG00000015585	-	82	47.619	Cynoglossus_semilaevis
ENSDARG00000053165	zgc:113377	80	45.492	ENSEBUG00000015073	-	86	46.964	Eptatretus_burgeri
ENSDARG00000053165	zgc:113377	84	54.618	ENSFHEG00000018009	-	53	54.618	Fundulus_heteroclitus
ENSDARG00000053165	zgc:113377	97	45.701	ENSFHEG00000018209	-	99	45.701	Fundulus_heteroclitus
ENSDARG00000053165	zgc:113377	81	46.154	ENSHBUG00000009953	-	66	46.154	Haplochromis_burtoni
ENSDARG00000053165	zgc:113377	99	52.381	ENSHBUG00000018916	-	88	52.381	Haplochromis_burtoni
ENSDARG00000053165	zgc:113377	80	52.381	ENSKMAG00000009563	-	56	43.200	Kryptolebias_marmoratus
ENSDARG00000053165	zgc:113377	99	50.000	ENSLBEG00000020461	-	92	48.235	Labrus_bergylta
ENSDARG00000053165	zgc:113377	99	43.069	ENSMAMG00000014743	-	69	43.069	Mastacembelus_armatus
ENSDARG00000053165	zgc:113377	97	50.000	ENSMZEG00005027943	-	99	55.208	Maylandia_zebra
ENSDARG00000053165	zgc:113377	80	41.767	ENSMZEG00005025568	-	79	44.118	Maylandia_zebra
ENSDARG00000053165	zgc:113377	99	52.976	ENSMZEG00005026470	-	66	52.976	Maylandia_zebra
ENSDARG00000053165	zgc:113377	79	43.137	ENSMZEG00005022161	-	90	41.860	Maylandia_zebra
ENSDARG00000053165	zgc:113377	86	41.489	ENSMZEG00005005162	-	76	41.206	Maylandia_zebra
ENSDARG00000053165	zgc:113377	99	53.012	ENSMZEG00005027793	-	84	53.012	Maylandia_zebra
ENSDARG00000053165	zgc:113377	80	52.632	ENSMZEG00005007426	-	64	52.632	Maylandia_zebra
ENSDARG00000053165	zgc:113377	80	47.030	ENSMZEG00005021426	-	75	47.030	Maylandia_zebra
ENSDARG00000053165	zgc:113377	80	47.000	ENSMZEG00005025729	-	92	47.000	Maylandia_zebra
ENSDARG00000053165	zgc:113377	85	38.929	ENSMALG00000008638	-	58	38.929	Monopterus_albus
ENSDARG00000053165	zgc:113377	80	44.690	ENSONIG00000013908	-	100	44.690	Oreochromis_niloticus
ENSDARG00000053165	zgc:113377	80	44.928	ENSONIG00000006585	-	95	41.667	Oreochromis_niloticus
ENSDARG00000053165	zgc:113377	80	43.784	ENSONIG00000003363	-	99	41.667	Oreochromis_niloticus
ENSDARG00000053165	zgc:113377	80	43.229	ENSPKIG00000020324	-	54	42.331	Paramormyrops_kingsleyae
ENSDARG00000053165	zgc:113377	79	41.353	ENSPMGG00000001558	znf1174	63	41.353	Periophthalmus_magnuspinnatus
ENSDARG00000053165	zgc:113377	80	44.395	ENSPFOG00000011766	-	98	44.395	Poecilia_formosa
ENSDARG00000053165	zgc:113377	80	50.758	ENSPFOG00000001144	-	100	46.117	Poecilia_formosa
ENSDARG00000053165	zgc:113377	99	46.729	ENSPLAG00000016561	zgc:113348	91	46.358	Poecilia_latipinna
ENSDARG00000053165	zgc:113377	85	42.143	ENSPREG00000014105	-	66	37.209	Poecilia_reticulata
ENSDARG00000053165	zgc:113377	93	36.090	ENSPREG00000005538	-	81	43.796	Poecilia_reticulata
ENSDARG00000053165	zgc:113377	79	41.379	ENSPNYG00000024183	zgc:173577	98	41.379	Pundamilia_nyererei
ENSDARG00000053165	zgc:113377	100	50.000	ENSSDUG00000008682	-	99	50.000	Seriola_dumerili
ENSDARG00000053165	zgc:113377	99	47.807	ENSSPAG00000013109	si:ch211-241b2.1	91	47.807	Stegastes_partitus
ENSDARG00000053165	zgc:113377	80	42.986	ENSSPAG00000006539	-	97	42.986	Stegastes_partitus
ENSDARG00000053165	zgc:113377	80	39.766	ENSSPAG00000009426	-	63	39.766	Stegastes_partitus
ENSDARG00000053165	zgc:113377	80	47.802	ENSTNIG00000000277	-	93	47.802	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function