EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053446 (Gene tree)
Gene ID: 553561
Gene Symbol: sub1a
Alias: zgc:109973
Full Name: SUB1 homolog%2C transcriptional regulator a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6956 bases
Position: chr10:8091144-8098099
Accession: ZDB-GENE-050522-151
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000069967	PC4	PF02229.16	5.9e-25	1	1
ENSDARP00000118111	PC4	PF02229.16	5.9e-25	1	1
ENSDARP00000149014	PC4	PF02229.16	5.9e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143848	-	734	-	ENSDARP00000118111	123 (aa)	-	Q504B1
ENSDART00000189915	-	381	-	ENSDARP00000149014	123 (aa)	-	Q504B1
ENSDART00000075485	-	714	-	ENSDARP00000069967	123 (aa)	-	Q504B1

Gene Model

Click here to download ENSDARG00000053446's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053446's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000053446	sub1a	99	79.675	ENSDARG00000007720	sub1b	99	77.236

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053446	sub1a	100	75.591	ENSG00000113387	SUB1	99	76.984	Homo_sapiens
ENSDARG00000053446	sub1a	100	80.000	ENSAPOG00000005917	SUB1	99	77.419	Acanthochromis_polyacanthus
ENSDARG00000053446	sub1a	100	76.378	ENSAMEG00000006238	SUB1	94	77.778	Ailuropoda_melanoleuca
ENSDARG00000053446	sub1a	100	81.600	ENSACIG00000015976	sub1b	99	83.871	Amphilophus_citrinellus
ENSDARG00000053446	sub1a	92	73.913	ENSAOCG00000007313	-	83	74.510	Amphiprion_ocellaris
ENSDARG00000053446	sub1a	76	77.895	ENSAOCG00000002323	-	86	64.762	Amphiprion_ocellaris
ENSDARG00000053446	sub1a	76	79.787	ENSAPEG00000017151	-	71	72.222	Amphiprion_percula
ENSDARG00000053446	sub1a	65	67.500	ENSAPEG00000014618	-	62	78.462	Amphiprion_percula
ENSDARG00000053446	sub1a	100	81.600	ENSAPEG00000024347	sub1b	100	78.400	Amphiprion_percula
ENSDARG00000053446	sub1a	100	83.200	ENSATEG00000010340	sub1b	99	79.839	Anabas_testudineus
ENSDARG00000053446	sub1a	99	69.697	ENSACAG00000007974	SUB1	99	72.727	Anolis_carolinensis
ENSDARG00000053446	sub1a	99	75.610	ENSANAG00000023392	-	83	78.049	Aotus_nancymaae
ENSDARG00000053446	sub1a	100	75.591	ENSANAG00000011651	-	99	76.984	Aotus_nancymaae
ENSDARG00000053446	sub1a	100	81.600	ENSACLG00000016875	sub1b	63	83.871	Astatotilapia_calliptera
ENSDARG00000053446	sub1a	100	78.571	ENSAMXG00000037104	sub1b	99	77.600	Astyanax_mexicanus
ENSDARG00000053446	sub1a	100	75.591	ENSBTAG00000021965	SUB1	99	76.984	Bos_taurus
ENSDARG00000053446	sub1a	80	74.510	ENSCJAG00000018718	SUB1	98	75.490	Callithrix_jacchus
ENSDARG00000053446	sub1a	99	76.800	ENSCAFG00000024488	-	99	75.000	Canis_familiaris
ENSDARG00000053446	sub1a	99	76.984	ENSCAFG00000018879	-	88	77.778	Canis_familiaris
ENSDARG00000053446	sub1a	100	75.591	ENSCAFG00000016713	-	95	76.984	Canis_familiaris
ENSDARG00000053446	sub1a	99	76.984	ENSCAFG00020016840	-	99	77.778	Canis_lupus_dingo
ENSDARG00000053446	sub1a	100	74.219	ENSCAFG00020011479	-	76	75.591	Canis_lupus_dingo
ENSDARG00000053446	sub1a	100	75.591	ENSCHIG00000008460	SUB1	99	76.984	Capra_hircus
ENSDARG00000053446	sub1a	99	68.992	ENSTSYG00000014069	-	92	70.543	Carlito_syrichta
ENSDARG00000053446	sub1a	100	75.591	ENSTSYG00000029948	-	99	76.984	Carlito_syrichta
ENSDARG00000053446	sub1a	100	67.717	ENSTSYG00000035366	-	82	68.254	Carlito_syrichta
ENSDARG00000053446	sub1a	100	75.591	ENSCPOG00000031334	SUB1	99	76.984	Cavia_porcellus
ENSDARG00000053446	sub1a	99	67.200	ENSCCAG00000017043	-	92	70.400	Cebus_capucinus
ENSDARG00000053446	sub1a	100	75.591	ENSCCAG00000023605	-	99	76.984	Cebus_capucinus
ENSDARG00000053446	sub1a	100	74.016	ENSCCAG00000033751	-	95	72.222	Cebus_capucinus
ENSDARG00000053446	sub1a	99	73.016	ENSCCAG00000020604	-	99	70.635	Cebus_capucinus
ENSDARG00000053446	sub1a	100	75.591	ENSCATG00000031199	SUB1	99	76.984	Cercocebus_atys
ENSDARG00000053446	sub1a	100	74.219	ENSCLAG00000007522	SUB1	99	75.591	Chinchilla_lanigera
ENSDARG00000053446	sub1a	100	74.016	ENSCSAG00000019449	-	99	77.778	Chlorocebus_sabaeus
ENSDARG00000053446	sub1a	100	75.591	ENSCSAG00000017172	-	99	76.984	Chlorocebus_sabaeus
ENSDARG00000053446	sub1a	99	78.400	ENSCPBG00000024218	SUB1	78	77.600	Chrysemys_picta_bellii
ENSDARG00000053446	sub1a	100	62.903	ENSCANG00000028665	-	89	67.480	Colobus_angolensis_palliatus
ENSDARG00000053446	sub1a	100	75.591	ENSCANG00000029372	SUB1	99	76.984	Colobus_angolensis_palliatus
ENSDARG00000053446	sub1a	69	71.591	ENSCGRG00001016254	-	54	79.688	Cricetulus_griseus_chok1gshd
ENSDARG00000053446	sub1a	100	73.228	ENSCGRG00001003473	-	99	74.603	Cricetulus_griseus_chok1gshd
ENSDARG00000053446	sub1a	100	60.630	ENSCGRG00001014660	-	99	59.350	Cricetulus_griseus_chok1gshd
ENSDARG00000053446	sub1a	100	73.228	ENSCGRG00000001133	-	99	74.603	Cricetulus_griseus_crigri
ENSDARG00000053446	sub1a	100	62.097	ENSCGRG00000001489	-	99	66.667	Cricetulus_griseus_crigri
ENSDARG00000053446	sub1a	100	60.630	ENSCGRG00000019368	-	99	59.350	Cricetulus_griseus_crigri
ENSDARG00000053446	sub1a	100	74.016	ENSDNOG00000040794	-	99	75.397	Dasypus_novemcinctus
ENSDARG00000053446	sub1a	99	73.016	ENSDNOG00000032396	-	99	73.810	Dasypus_novemcinctus
ENSDARG00000053446	sub1a	99	76.190	ENSDORG00000013916	Sub1	99	76.984	Dipodomys_ordii
ENSDARG00000053446	sub1a	77	52.632	ENSEBUG00000008746	sub1a	52	52.632	Eptatretus_burgeri
ENSDARG00000053446	sub1a	100	75.591	ENSEASG00005007099	SUB1	99	76.984	Equus_asinus_asinus
ENSDARG00000053446	sub1a	100	75.591	ENSECAG00000012399	SUB1	99	76.984	Equus_caballus
ENSDARG00000053446	sub1a	79	81.000	ENSEEUG00000000436	SUB1	98	77.000	Erinaceus_europaeus
ENSDARG00000053446	sub1a	99	76.984	ENSFCAG00000037288	SUB1	99	77.778	Felis_catus
ENSDARG00000053446	sub1a	99	78.400	ENSFALG00000002143	SUB1	86	76.000	Ficedula_albicollis
ENSDARG00000053446	sub1a	100	75.591	ENSFDAG00000017179	SUB1	99	76.984	Fukomys_damarensis
ENSDARG00000053446	sub1a	100	76.984	ENSGALG00000034905	-	99	75.200	Gallus_gallus
ENSDARG00000053446	sub1a	99	48.800	ENSGALG00000027147	-	99	48.000	Gallus_gallus
ENSDARG00000053446	sub1a	100	78.571	ENSGALG00000003248	SUB1	99	76.800	Gallus_gallus
ENSDARG00000053446	sub1a	100	80.800	ENSGACG00000003912	sub1b	99	76.613	Gasterosteus_aculeatus
ENSDARG00000053446	sub1a	100	77.778	ENSGAGG00000013535	SUB1	99	76.000	Gopherus_agassizii
ENSDARG00000053446	sub1a	100	75.591	ENSGGOG00000040900	SUB1	99	76.984	Gorilla_gorilla
ENSDARG00000053446	sub1a	99	68.548	ENSHBUG00000013953	sub1b	76	81.373	Haplochromis_burtoni
ENSDARG00000053446	sub1a	100	75.591	ENSHGLG00000006749	SUB1	99	76.984	Heterocephalus_glaber_female
ENSDARG00000053446	sub1a	100	75.591	ENSHGLG00100014344	SUB1	99	76.984	Heterocephalus_glaber_male
ENSDARG00000053446	sub1a	98	77.236	ENSHCOG00000001809	sub1b	98	76.423	Hippocampus_comes
ENSDARG00000053446	sub1a	100	84.375	ENSIPUG00000024367	SUB1	99	82.677	Ictalurus_punctatus
ENSDARG00000053446	sub1a	99	79.032	ENSIPUG00000008166	sub1	99	78.226	Ictalurus_punctatus
ENSDARG00000053446	sub1a	100	74.803	ENSSTOG00000019364	SUB1	99	76.190	Ictidomys_tridecemlineatus
ENSDARG00000053446	sub1a	99	69.841	ENSJJAG00000018885	Sub1	99	73.810	Jaculus_jaculus
ENSDARG00000053446	sub1a	100	79.200	ENSLBEG00000010728	sub1b	100	75.200	Labrus_bergylta
ENSDARG00000053446	sub1a	53	87.692	ENSLACG00000001068	SUB1	98	89.062	Latimeria_chalumnae
ENSDARG00000053446	sub1a	100	84.800	ENSLOCG00000006692	sub1b	99	82.258	Lepisosteus_oculatus
ENSDARG00000053446	sub1a	100	74.016	ENSLAFG00000032088	-	99	77.778	Loxodonta_africana
ENSDARG00000053446	sub1a	100	74.016	ENSLAFG00000011006	-	99	77.778	Loxodonta_africana
ENSDARG00000053446	sub1a	99	68.254	ENSMFAG00000045643	-	60	68.254	Macaca_fascicularis
ENSDARG00000053446	sub1a	100	75.591	ENSMFAG00000040728	SUB1	99	76.984	Macaca_fascicularis
ENSDARG00000053446	sub1a	100	75.591	ENSMMUG00000046181	SUB1	99	76.984	Macaca_mulatta
ENSDARG00000053446	sub1a	100	75.591	ENSMNEG00000037046	SUB1	99	76.984	Macaca_nemestrina
ENSDARG00000053446	sub1a	100	60.484	ENSMLEG00000043436	-	89	66.667	Mandrillus_leucophaeus
ENSDARG00000053446	sub1a	100	75.591	ENSMLEG00000037017	-	99	76.984	Mandrillus_leucophaeus
ENSDARG00000053446	sub1a	99	74.603	ENSMLEG00000030509	-	93	74.603	Mandrillus_leucophaeus
ENSDARG00000053446	sub1a	100	80.000	ENSMAMG00000018428	sub1b	99	77.419	Mastacembelus_armatus
ENSDARG00000053446	sub1a	100	81.600	ENSMZEG00005021252	sub1b	99	83.871	Maylandia_zebra
ENSDARG00000053446	sub1a	100	78.571	ENSMGAG00000002906	SUB1	99	76.800	Meleagris_gallopavo
ENSDARG00000053446	sub1a	100	73.228	ENSMAUG00000020232	Sub1	99	74.603	Mesocricetus_auratus
ENSDARG00000053446	sub1a	100	75.591	ENSMICG00000014535	SUB1	99	76.984	Microcebus_murinus
ENSDARG00000053446	sub1a	100	61.111	ENSMOCG00000016424	-	99	61.475	Microtus_ochrogaster
ENSDARG00000053446	sub1a	100	72.441	ENSMOCG00000018930	-	99	73.810	Microtus_ochrogaster
ENSDARG00000053446	sub1a	100	69.784	ENSMODG00000020410	SUB1	99	71.739	Monodelphis_domestica
ENSDARG00000053446	sub1a	100	81.600	ENSMALG00000007163	sub1b	81	79.032	Monopterus_albus
ENSDARG00000053446	sub1a	100	73.228	MGP_CAROLIEiJ_G0019676	Sub1	99	74.603	Mus_caroli
ENSDARG00000053446	sub1a	100	74.016	ENSMUSG00000022205	Sub1	99	75.397	Mus_musculus
ENSDARG00000053446	sub1a	100	72.441	MGP_PahariEiJ_G0016056	Sub1	99	73.810	Mus_pahari
ENSDARG00000053446	sub1a	100	74.016	MGP_SPRETEiJ_G0020573	Sub1	99	75.397	Mus_spretus
ENSDARG00000053446	sub1a	99	76.984	ENSMPUG00000015185	-	99	77.778	Mustela_putorius_furo
ENSDARG00000053446	sub1a	99	76.190	ENSMPUG00000018418	-	99	76.984	Mustela_putorius_furo
ENSDARG00000053446	sub1a	100	75.591	ENSMLUG00000013685	-	94	76.984	Myotis_lucifugus
ENSDARG00000053446	sub1a	99	71.429	ENSMLUG00000009236	-	94	71.429	Myotis_lucifugus
ENSDARG00000053446	sub1a	100	69.841	ENSNGAG00000010782	-	83	72.000	Nannospalax_galili
ENSDARG00000053446	sub1a	100	73.228	ENSNGAG00000014072	-	99	74.603	Nannospalax_galili
ENSDARG00000053446	sub1a	100	64.286	ENSNGAG00000017212	-	99	61.290	Nannospalax_galili
ENSDARG00000053446	sub1a	83	77.885	ENSNBRG00000008451	sub1b	83	80.392	Neolamprologus_brichardi
ENSDARG00000053446	sub1a	99	71.200	ENSNLEG00000035968	-	99	72.000	Nomascus_leucogenys
ENSDARG00000053446	sub1a	100	74.803	ENSNLEG00000018383	-	94	76.984	Nomascus_leucogenys
ENSDARG00000053446	sub1a	100	74.803	ENSNLEG00000036068	SUB1	99	76.190	Nomascus_leucogenys
ENSDARG00000053446	sub1a	100	76.984	ENSMEUG00000007770	SUB1	99	79.200	Notamacropus_eugenii
ENSDARG00000053446	sub1a	100	73.228	ENSOPRG00000012887	SUB1	99	77.778	Ochotona_princeps
ENSDARG00000053446	sub1a	85	75.926	ENSODEG00000014558	-	71	76.636	Octodon_degus
ENSDARG00000053446	sub1a	85	78.505	ENSODEG00000015114	-	86	74.766	Octodon_degus
ENSDARG00000053446	sub1a	100	75.591	ENSODEG00000001937	-	99	76.984	Octodon_degus
ENSDARG00000053446	sub1a	99	77.600	ENSOANG00000002328	SUB1	94	79.200	Ornithorhynchus_anatinus
ENSDARG00000053446	sub1a	99	75.397	ENSOCUG00000006262	SUB1	60	73.016	Oryctolagus_cuniculus
ENSDARG00000053446	sub1a	100	75.591	ENSOGAG00000009012	-	99	76.984	Otolemur_garnettii
ENSDARG00000053446	sub1a	98	76.613	ENSOGAG00000000337	-	100	77.419	Otolemur_garnettii
ENSDARG00000053446	sub1a	100	75.591	ENSOARG00000012154	SUB1	99	76.984	Ovis_aries
ENSDARG00000053446	sub1a	100	75.591	ENSPPAG00000011212	SUB1	99	76.984	Pan_paniscus
ENSDARG00000053446	sub1a	99	76.984	ENSPPRG00000008557	SUB1	99	77.778	Panthera_pardus
ENSDARG00000053446	sub1a	99	76.984	ENSPTIG00000009466	SUB1	99	77.778	Panthera_tigris_altaica
ENSDARG00000053446	sub1a	100	75.591	ENSPTRG00000048895	SUB1	99	76.984	Pan_troglodytes
ENSDARG00000053446	sub1a	99	70.635	ENSPTRG00000041644	-	99	72.222	Pan_troglodytes
ENSDARG00000053446	sub1a	100	75.591	ENSPANG00000002644	-	94	76.984	Papio_anubis
ENSDARG00000053446	sub1a	100	74.016	ENSPANG00000000672	-	90	74.603	Papio_anubis
ENSDARG00000053446	sub1a	100	75.591	ENSPANG00000000339	-	96	76.984	Papio_anubis
ENSDARG00000053446	sub1a	100	64.516	ENSPANG00000033272	-	89	65.854	Papio_anubis
ENSDARG00000053446	sub1a	100	70.968	ENSPANG00000035601	-	99	75.610	Papio_anubis
ENSDARG00000053446	sub1a	99	79.032	ENSPKIG00000016923	sub1b	99	78.226	Paramormyrops_kingsleyae
ENSDARG00000053446	sub1a	100	76.984	ENSPSIG00000005731	SUB1	94	76.800	Pelodiscus_sinensis
ENSDARG00000053446	sub1a	100	76.984	ENSPCIG00000020907	-	99	79.200	Phascolarctos_cinereus
ENSDARG00000053446	sub1a	99	77.236	ENSPCIG00000020827	-	99	76.423	Phascolarctos_cinereus
ENSDARG00000053446	sub1a	99	73.016	ENSPPYG00000018347	-	99	74.603	Pongo_abelii
ENSDARG00000053446	sub1a	100	75.591	ENSPPYG00000015379	SUB1	99	76.984	Pongo_abelii
ENSDARG00000053446	sub1a	100	75.591	ENSPCOG00000014391	SUB1	99	76.984	Propithecus_coquereli
ENSDARG00000053446	sub1a	100	75.591	ENSPVAG00000004785	SUB1	99	76.984	Pteropus_vampyrus
ENSDARG00000053446	sub1a	100	81.600	ENSPNYG00000010975	sub1b	99	83.871	Pundamilia_nyererei
ENSDARG00000053446	sub1a	100	84.921	ENSPNAG00000008693	sub1a	99	87.200	Pygocentrus_nattereri
ENSDARG00000053446	sub1a	100	79.200	ENSPNAG00000005998	sub1b	100	79.200	Pygocentrus_nattereri
ENSDARG00000053446	sub1a	100	74.016	ENSRNOG00000050563	Sub1	99	75.397	Rattus_norvegicus
ENSDARG00000053446	sub1a	100	70.866	ENSRBIG00000031233	SUB1	99	72.222	Rhinopithecus_bieti
ENSDARG00000053446	sub1a	100	68.548	ENSRROG00000042718	-	90	71.545	Rhinopithecus_roxellana
ENSDARG00000053446	sub1a	100	75.591	ENSRROG00000040438	SUB1	99	76.984	Rhinopithecus_roxellana
ENSDARG00000053446	sub1a	100	75.591	ENSSBOG00000026994	SUB1	99	76.984	Saimiri_boliviensis_boliviensis
ENSDARG00000053446	sub1a	100	76.984	ENSSHAG00000014986	SUB1	99	79.200	Sarcophilus_harrisii
ENSDARG00000053446	sub1a	100	81.102	ENSSFOG00015018386	sub1b	99	80.952	Scleropages_formosus
ENSDARG00000053446	sub1a	99	80.645	ENSSFOG00015017283	sub1b	99	79.839	Scleropages_formosus
ENSDARG00000053446	sub1a	100	80.800	ENSSMAG00000000313	sub1b	99	75.806	Scophthalmus_maximus
ENSDARG00000053446	sub1a	100	83.200	ENSSDUG00000013854	sub1b	76	78.226	Seriola_dumerili
ENSDARG00000053446	sub1a	100	83.200	ENSSLDG00000000852	sub1b	99	78.226	Seriola_lalandi_dorsalis
ENSDARG00000053446	sub1a	100	76.984	ENSSPUG00000016817	SUB1	99	75.200	Sphenodon_punctatus
ENSDARG00000053446	sub1a	100	83.200	ENSSPAG00000019363	sub1b	99	78.226	Stegastes_partitus
ENSDARG00000053446	sub1a	100	75.591	ENSSSCG00000032650	-	99	76.984	Sus_scrofa
ENSDARG00000053446	sub1a	100	75.591	ENSSSCG00000040294	-	86	76.984	Sus_scrofa
ENSDARG00000053446	sub1a	99	77.600	ENSTGUG00000001918	SUB1	99	78.400	Taeniopygia_guttata
ENSDARG00000053446	sub1a	100	79.200	ENSTRUG00000024420	sub1b	99	75.806	Takifugu_rubripes
ENSDARG00000053446	sub1a	100	77.600	ENSTNIG00000002700	sub1b	99	74.194	Tetraodon_nigroviridis
ENSDARG00000053446	sub1a	99	74.603	ENSTBEG00000001790	-	99	70.635	Tupaia_belangeri
ENSDARG00000053446	sub1a	100	77.165	ENSTBEG00000011247	-	98	74.603	Tupaia_belangeri
ENSDARG00000053446	sub1a	99	76.984	ENSTBEG00000012861	-	99	71.429	Tupaia_belangeri
ENSDARG00000053446	sub1a	100	74.016	ENSTBEG00000004053	-	99	75.397	Tupaia_belangeri
ENSDARG00000053446	sub1a	100	74.803	ENSTBEG00000006504	-	99	76.190	Tupaia_belangeri
ENSDARG00000053446	sub1a	99	68.254	ENSTBEG00000015821	-	100	69.048	Tupaia_belangeri
ENSDARG00000053446	sub1a	80	81.373	ENSTTRG00000017324	SUB1	98	78.218	Tursiops_truncatus
ENSDARG00000053446	sub1a	99	76.984	ENSUAMG00000000182	SUB1	99	77.778	Ursus_americanus
ENSDARG00000053446	sub1a	99	76.984	ENSUMAG00000013792	SUB1	99	77.778	Ursus_maritimus
ENSDARG00000053446	sub1a	100	68.254	ENSVPAG00000011012	SUB1	99	72.000	Vicugna_pacos
ENSDARG00000053446	sub1a	86	72.727	ENSVVUG00000025193	-	95	70.796	Vulpes_vulpes
ENSDARG00000053446	sub1a	99	76.984	ENSVVUG00000022166	-	99	77.778	Vulpes_vulpes
ENSDARG00000053446	sub1a	100	71.094	ENSXETG00000027218	sub1	99	75.591	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003713	transcription coactivator activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005667	transcription factor complex	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process