EuRBPDB

Description
Ensembl ID
ENSDARG00000053805 (Gene tree)
Gene ID
556642
Gene Symbol
trub1
Alias
zgc:195155
Full Name
TruB pseudouridine (psi) synthase family member 1
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
7482 bases
Position
chr12:30036425-30043906
Accession
ZDB-GENE-080723-73
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein ID
Domain
Pfam ID
E-value
Domain number
Total number
ENSDARP00000070369TruB_NPF01509.182.4e-4811
ENSDARP00000123987TruB_NPF01509.182.4e-3611
ENSDARP00000124035TruB_NPF01509.183.5e-2011
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
ENSDART00000150220-400-ENSDARP00000124035133 (aa)-F8W3T9
ENSDART00000148847-892-ENSDARP00000123987258 (aa)-F8W456
ENSDART00000149077-973-ENSDARP0000012495489 (aa)-F8W5W3
ENSDART00000075889-1197-ENSDARP00000070369290 (aa)-B3DHG0
Gene Model
Protein-Protein Interaction (PPI)
Paralogs
Ensembl ID
Gene Symbol
Coverage
Identiy
Paralog
Gene Symbol
Coverage
Identiy
ENSDARG00000053805trub16831.111ENSDARG00000028379trub25532.821
Orthologs
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
ENSDARG00000053805trub19066.920ENSG00000165832TRUB17566.920Homo_sapiens
ENSDARG00000053805trub19985.294ENSAPOG00000020565trub19971.533Acanthochromis_polyacanthus
ENSDARG00000053805trub19363.830ENSAMEG00000014931TRUB18063.830Ailuropoda_melanoleuca
ENSDARG00000053805trub18474.537ENSACIG00000003060trub18174.537Amphilophus_citrinellus
ENSDARG00000053805trub19985.294ENSAOCG00000017188trub19971.898Amphiprion_ocellaris
ENSDARG00000053805trub19985.294ENSAPEG00000015209trub19971.533Amphiprion_percula
ENSDARG00000053805trub19569.675ENSATEG00000023291trub19469.675Anabas_testudineus
ENSDARG00000053805trub19463.139ENSAPLG00000006808TRUB19963.139Anas_platyrhynchos
ENSDARG00000053805trub19063.846ENSACAG00000009282TRUB19463.846Anolis_carolinensis
ENSDARG00000053805trub18967.181ENSANAG00000022870TRUB17467.181Aotus_nancymaae
ENSDARG00000053805trub19982.353ENSACLG00000000823trub19471.374Astatotilapia_calliptera
ENSDARG00000053805trub19985.294ENSAMXG00000015845trub19578.246Astyanax_mexicanus
ENSDARG00000053805trub19067.300ENSBTAG00000012955TRUB17567.300Bos_taurus
ENSDARG00000053805trub18967.181ENSCJAG00000047815TRUB17467.181Callithrix_jacchus
ENSDARG00000053805trub19364.286ENSCAFG00000011688TRUB18064.286Canis_familiaris
ENSDARG00000053805trub19364.286ENSCAFG00020013237TRUB18064.286Canis_lupus_dingo
ENSDARG00000053805trub19970.588ENSCHIG00000020884TRUB17966.920Capra_hircus
ENSDARG00000053805trub19065.019ENSTSYG00000000446TRUB17565.019Carlito_syrichta
ENSDARG00000053805trub17958.228ENSCAPG00000017088TRUB19358.228Cavia_aperea
ENSDARG00000053805trub17669.608ENSCPOG00000030129-7764.646Cavia_porcellus
ENSDARG00000053805trub17669.608ENSCPOG00000040236-7567.760Cavia_porcellus
ENSDARG00000053805trub19363.929ENSCCAG00000028842TRUB18063.929Cebus_capucinus
ENSDARG00000053805trub18967.181ENSCATG00000033431TRUB17467.181Cercocebus_atys
ENSDARG00000053805trub17668.627ENSCLAG00000008664TRUB17566.120Chinchilla_lanigera
ENSDARG00000053805trub18967.181ENSCSAG00000004891TRUB17467.181Chlorocebus_sabaeus
ENSDARG00000053805trub17570.297ENSCHOG00000011931TRUB17061.728Choloepus_hoffmanni
ENSDARG00000053805trub19265.299ENSCPBG00000003051TRUB19365.299Chrysemys_picta_bellii
ENSDARG00000053805trub18967.181ENSCANG00000029445TRUB17467.181Colobus_angolensis_palliatus
ENSDARG00000053805trub19057.721ENSCGRG00001010322-7855.862Cricetulus_griseus_chok1gshd
ENSDARG00000053805trub18163.968ENSCGRG00001016772-8263.855Cricetulus_griseus_chok1gshd
ENSDARG00000053805trub19064.103ENSCGRG00000010806Trub18563.929Cricetulus_griseus_crigri
ENSDARG00000053805trub19169.925ENSCSEG00000011261trub18769.231Cynoglossus_semilaevis
ENSDARG00000053805trub19982.353ENSCVAG00000008791trub17675.000Cyprinodon_variegatus
ENSDARG00000053805trub19263.100ENSDNOG00000001069TRUB17763.100Dasypus_novemcinctus
ENSDARG00000053805trub18766.270ENSDORG00000010431Trub17566.023Dipodomys_ordii
ENSDARG00000053805trub17669.608ENSETEG00000009183TRUB15867.153Echinops_telfairi
ENSDARG00000053805trub19165.909ENSEASG00005014739TRUB17565.909Equus_asinus_asinus
ENSDARG00000053805trub19165.909ENSECAG00000007177TRUB17565.909Equus_caballus
ENSDARG00000053805trub19970.588ENSEEUG00000013993TRUB17358.555Erinaceus_europaeus
ENSDARG00000053805trub19076.426ENSELUG00000000502trub19276.426Esox_lucius
ENSDARG00000053805trub19066.920ENSFCAG00000031927TRUB17566.920Felis_catus
ENSDARG00000053805trub18166.525ENSFALG00000002232TRUB19166.525Ficedula_albicollis
ENSDARG00000053805trub17668.627ENSFDAG00000008140TRUB17567.213Fukomys_damarensis
ENSDARG00000053805trub19979.412ENSFHEG00000004016trub18572.984Fundulus_heteroclitus
ENSDARG00000053805trub19064.885ENSGALG00000009091TRUB19364.885Gallus_gallus
ENSDARG00000053805trub19979.412ENSGAFG00000009193trub18671.837Gambusia_affinis
ENSDARG00000053805trub16874.619ENSGACG00000015387trub19774.619Gasterosteus_aculeatus
ENSDARG00000053805trub19365.428ENSGAGG00000009758TRUB17566.794Gopherus_agassizii
ENSDARG00000053805trub19066.920ENSGGOG00000004583TRUB17566.920Gorilla_gorilla
ENSDARG00000053805trub19982.353ENSHBUG00000016787trub19769.853Haplochromis_burtoni
ENSDARG00000053805trub18466.939ENSHGLG00000015314TRUB17066.939Heterocephalus_glaber_female
ENSDARG00000053805trub17667.647ENSHGLG00100009183TRUB17766.667Heterocephalus_glaber_male
ENSDARG00000053805trub19982.353ENSHCOG00000017877trub19674.532Hippocampus_comes
ENSDARG00000053805trub19775.265ENSIPUG00000017559trub19578.067Ictalurus_punctatus
ENSDARG00000053805trub19363.971ENSSTOG00000003641TRUB18163.971Ictidomys_tridecemlineatus
ENSDARG00000053805trub19464.130ENSJJAG00000011800Trub17766.160Jaculus_jaculus
ENSDARG00000053805trub19982.353ENSKMAG00000006232trub19271.595Kryptolebias_marmoratus
ENSDARG00000053805trub19985.294ENSLBEG00000026722trub19173.077Labrus_bergylta
ENSDARG00000053805trub19663.082ENSLACG00000014885TRUB19463.082Latimeria_chalumnae
ENSDARG00000053805trub19369.231ENSLOCG00000012979trub19369.231Lepisosteus_oculatus
ENSDARG00000053805trub18468.571ENSLAFG00000015452TRUB17963.538Loxodonta_africana
ENSDARG00000053805trub18967.181ENSMFAG00000031767TRUB17467.181Macaca_fascicularis
ENSDARG00000053805trub18967.181ENSMMUG00000001902TRUB17467.181Macaca_mulatta
ENSDARG00000053805trub18961.390ENSMNEG00000044646TRUB17361.390Macaca_nemestrina
ENSDARG00000053805trub18967.181ENSMLEG00000042655TRUB17467.181Mandrillus_leucophaeus
ENSDARG00000053805trub19982.353ENSMZEG00005024095trub19471.374Maylandia_zebra
ENSDARG00000053805trub19662.724ENSMGAG00000011135TRUB19662.724Meleagris_gallopavo
ENSDARG00000053805trub18765.098ENSMAUG00000011101Trub17764.885Mesocricetus_auratus
ENSDARG00000053805trub19066.160ENSMICG00000016324TRUB17566.160Microcebus_murinus
ENSDARG00000053805trub18867.315ENSMOCG00000017759Trub18067.045Microtus_ochrogaster
ENSDARG00000053805trub19265.441ENSMODG00000009676TRUB17963.509Monodelphis_domestica
ENSDARG00000053805trub18965.385MGP_CAROLIEiJ_G0023100Trub17865.152Mus_caroli
ENSDARG00000053805trub18964.615ENSMUSG00000025086Trub17864.394Mus_musculus
ENSDARG00000053805trub19065.019MGP_PahariEiJ_G0014588Trub17865.019Mus_pahari
ENSDARG00000053805trub18964.615MGP_SPRETEiJ_G0024021Trub17864.394Mus_spretus
ENSDARG00000053805trub19364.643ENSMPUG00000003556TRUB18064.643Mustela_putorius_furo
ENSDARG00000053805trub19860.943ENSMLUG00000017686TRUB18660.943Myotis_lucifugus
ENSDARG00000053805trub18966.795ENSNGAG00000018682Trub17466.795Nannospalax_galili
ENSDARG00000053805trub19985.294ENSNBRG00000023393trub19173.828Neolamprologus_brichardi
ENSDARG00000053805trub19066.920ENSNLEG00000016345TRUB17566.920Nomascus_leucogenys
ENSDARG00000053805trub17669.608ENSMEUG00000006603TRUB17966.981Notamacropus_eugenii
ENSDARG00000053805trub19363.100ENSOPRG00000009371TRUB17963.100Ochotona_princeps
ENSDARG00000053805trub19363.971ENSODEG00000010854TRUB17863.971Octodon_degus
ENSDARG00000053805trub19982.353ENSONIG00000007249trub19074.597Oreochromis_niloticus
ENSDARG00000053805trub18565.992ENSOANG00000001556TRUB18365.882Ornithorhynchus_anatinus
ENSDARG00000053805trub19164.773ENSOCUG00000009456TRUB17664.773Oryctolagus_cuniculus
ENSDARG00000053805trub19369.485ENSORLG00000029719trub19967.944Oryzias_latipes
ENSDARG00000053805trub19369.485ENSORLG00020016767trub19867.944Oryzias_latipes_hni
ENSDARG00000053805trub18872.763ENSORLG00015014728trub19770.956Oryzias_latipes_hsok
ENSDARG00000053805trub18973.106ENSOMEG00000014556trub19373.106Oryzias_melastigma
ENSDARG00000053805trub18967.181ENSOGAG00000015895TRUB17467.181Otolemur_garnettii
ENSDARG00000053805trub19968.224ENSOARG00000015591TRUB17765.556Ovis_aries
ENSDARG00000053805trub19066.920ENSPPAG00000043645TRUB17566.920Pan_paniscus
ENSDARG00000053805trub19067.300ENSPPRG00000007096TRUB17567.300Panthera_pardus
ENSDARG00000053805trub19067.300ENSPTIG00000006378TRUB17567.300Panthera_tigris_altaica
ENSDARG00000053805trub19066.920ENSPTRG00000002964TRUB17566.920Pan_troglodytes
ENSDARG00000053805trub18967.181ENSPANG00000020712TRUB17467.181Papio_anubis
ENSDARG00000053805trub17569.231ENSPKIG00000003852trub18469.231Paramormyrops_kingsleyae
ENSDARG00000053805trub19464.706ENSPSIG00000012877TRUB19464.706Pelodiscus_sinensis
ENSDARG00000053805trub19982.353ENSPMGG00000000075trub19272.941Periophthalmus_magnuspinnatus
ENSDARG00000053805trub19164.015ENSPEMG00000011156Trub17864.015Peromyscus_maniculatus_bairdii
ENSDARG00000053805trub19265.441ENSPCIG00000009729TRUB17763.958Phascolarctos_cinereus
ENSDARG00000053805trub19982.353ENSPFOG00000009950trub19770.149Poecilia_formosa
ENSDARG00000053805trub19270.149ENSPLAG00000013855trub19370.149Poecilia_latipinna
ENSDARG00000053805trub19982.353ENSPMEG00000009064trub19670.149Poecilia_mexicana
ENSDARG00000053805trub19982.353ENSPREG00000003343trub19670.522Poecilia_reticulata
ENSDARG00000053805trub19067.300ENSPPYG00000002676TRUB17567.300Pongo_abelii
ENSDARG00000053805trub19258.955ENSPCAG00000008427TRUB17460.618Procavia_capensis
ENSDARG00000053805trub19060.456ENSPCOG00000024360TRUB17460.456Propithecus_coquereli
ENSDARG00000053805trub17670.588ENSPVAG00000007575TRUB17769.307Pteropus_vampyrus
ENSDARG00000053805trub19982.353ENSPNYG00000018614trub19471.103Pundamilia_nyererei
ENSDARG00000053805trub110074.806ENSPNAG00000006881trub19674.806Pygocentrus_nattereri
ENSDARG00000053805trub19363.469ENSRNOG00000017321Trub17963.469Rattus_norvegicus
ENSDARG00000053805trub19952.809ENSRBIG00000033423TRUB17259.004Rhinopithecus_bieti
ENSDARG00000053805trub18967.181ENSRROG00000033902TRUB17467.181Rhinopithecus_roxellana
ENSDARG00000053805trub19363.929ENSSBOG00000024237TRUB18063.929Saimiri_boliviensis_boliviensis
ENSDARG00000053805trub18265.432ENSSHAG00000009346TRUB18165.432Sarcophilus_harrisii
ENSDARG00000053805trub19987.500ENSSFOG00015022124trub19970.000Scleropages_formosus
ENSDARG00000053805trub19074.427ENSSMAG00000001020trub19274.427Scophthalmus_maximus
ENSDARG00000053805trub18276.151ENSSDUG00000016414trub19076.707Seriola_dumerili
ENSDARG00000053805trub18276.151ENSSLDG00000015486trub19076.707Seriola_lalandi_dorsalis
ENSDARG00000053805trub19166.160ENSSPUG00000001642TRUB19166.160Sphenodon_punctatus
ENSDARG00000053805trub19985.294ENSSPAG00000001217trub19075.502Stegastes_partitus
ENSDARG00000053805trub19066.160ENSSSCG00000010653TRUB17766.160Sus_scrofa
ENSDARG00000053805trub19167.925ENSTGUG00000010971TRUB19567.925Taeniopygia_guttata
ENSDARG00000053805trub17675.714ENSTBEG00000002880TRUB19455.230Tupaia_belangeri
ENSDARG00000053805trub17669.608ENSTTRG00000005767TRUB17768.812Tursiops_truncatus
ENSDARG00000053805trub19364.286ENSUAMG00000024876TRUB18064.286Ursus_americanus
ENSDARG00000053805trub19364.286ENSUMAG00000002411TRUB18662.887Ursus_maritimus
ENSDARG00000053805trub19066.540ENSVPAG00000005507TRUB17566.540Vicugna_pacos
ENSDARG00000053805trub19364.286ENSVVUG00000010085TRUB16764.286Vulpes_vulpes
ENSDARG00000053805trub19976.471ENSXETG00000023828trub19965.125Xenopus_tropicalis
ENSDARG00000053805trub19069.466ENSXCOG00000017847trub19069.466Xiphophorus_couchianus
ENSDARG00000053805trub19982.353ENSXMAG00000014701trub19073.494Xiphophorus_maculatus
Gene Ontology
Go ID
Go_term
PubmedID
Evidence
Category
GO:0001522pseudouridine synthesis-IEAProcess
GO:0003723RNA binding-IEAFunction
GO:0005739mitochondrion21873635.IBAComponent
GO:0006396RNA processing-IEAProcess
GO:0006400tRNA modification21873635.IBAProcess
GO:0009451RNA modification-IEAProcess
GO:0009982pseudouridine synthase activity21873635.IBAFunction
GO:0009982pseudouridine synthase activity-IEAFunction
GO:1990481mRNA pseudouridine synthesis21873635.IBAProcess