EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053805 (Gene tree)
Gene ID: 556642
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7482 bases
Position: chr12:30036425-30043906
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000070369	TruB_N	PF01509.18	2.4e-48	1	1
ENSDARP00000123987	TruB_N	PF01509.18	2.4e-36	1	1
ENSDARP00000124035	TruB_N	PF01509.18	3.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000150220	-	400	-	ENSDARP00000124035	133 (aa)	-	F8W3T9
ENSDART00000148847	-	892	-	ENSDARP00000123987	258 (aa)	-	F8W456
ENSDART00000149077	-	973	-	ENSDARP00000124954	89 (aa)	-	F8W5W3
ENSDART00000075889	-	1197	-	ENSDARP00000070369	290 (aa)	-	B3DHG0

Gene Model

Click here to download ENSDARG00000053805's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053805's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000053805	trub1	68	31.111	ENSDARG00000028379	trub2	55	32.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053805	trub1	90	66.920	ENSG00000165832	TRUB1	75	66.920	Homo_sapiens
ENSDARG00000053805	trub1	99	85.294	ENSAPOG00000020565	trub1	99	71.533	Acanthochromis_polyacanthus
ENSDARG00000053805	trub1	93	63.830	ENSAMEG00000014931	TRUB1	80	63.830	Ailuropoda_melanoleuca
ENSDARG00000053805	trub1	84	74.537	ENSACIG00000003060	trub1	81	74.537	Amphilophus_citrinellus
ENSDARG00000053805	trub1	99	85.294	ENSAOCG00000017188	trub1	99	71.898	Amphiprion_ocellaris
ENSDARG00000053805	trub1	99	85.294	ENSAPEG00000015209	trub1	99	71.533	Amphiprion_percula
ENSDARG00000053805	trub1	95	69.675	ENSATEG00000023291	trub1	94	69.675	Anabas_testudineus
ENSDARG00000053805	trub1	94	63.139	ENSAPLG00000006808	TRUB1	99	63.139	Anas_platyrhynchos
ENSDARG00000053805	trub1	90	63.846	ENSACAG00000009282	TRUB1	94	63.846	Anolis_carolinensis
ENSDARG00000053805	trub1	89	67.181	ENSANAG00000022870	TRUB1	74	67.181	Aotus_nancymaae
ENSDARG00000053805	trub1	99	82.353	ENSACLG00000000823	trub1	94	71.374	Astatotilapia_calliptera
ENSDARG00000053805	trub1	99	85.294	ENSAMXG00000015845	trub1	95	78.246	Astyanax_mexicanus
ENSDARG00000053805	trub1	90	67.300	ENSBTAG00000012955	TRUB1	75	67.300	Bos_taurus
ENSDARG00000053805	trub1	89	67.181	ENSCJAG00000047815	TRUB1	74	67.181	Callithrix_jacchus
ENSDARG00000053805	trub1	93	64.286	ENSCAFG00000011688	TRUB1	80	64.286	Canis_familiaris
ENSDARG00000053805	trub1	93	64.286	ENSCAFG00020013237	TRUB1	80	64.286	Canis_lupus_dingo
ENSDARG00000053805	trub1	99	70.588	ENSCHIG00000020884	TRUB1	79	66.920	Capra_hircus
ENSDARG00000053805	trub1	90	65.019	ENSTSYG00000000446	TRUB1	75	65.019	Carlito_syrichta
ENSDARG00000053805	trub1	79	58.228	ENSCAPG00000017088	TRUB1	93	58.228	Cavia_aperea
ENSDARG00000053805	trub1	76	69.608	ENSCPOG00000030129	-	77	64.646	Cavia_porcellus
ENSDARG00000053805	trub1	76	69.608	ENSCPOG00000040236	-	75	67.760	Cavia_porcellus
ENSDARG00000053805	trub1	93	63.929	ENSCCAG00000028842	TRUB1	80	63.929	Cebus_capucinus
ENSDARG00000053805	trub1	89	67.181	ENSCATG00000033431	TRUB1	74	67.181	Cercocebus_atys
ENSDARG00000053805	trub1	76	68.627	ENSCLAG00000008664	TRUB1	75	66.120	Chinchilla_lanigera
ENSDARG00000053805	trub1	89	67.181	ENSCSAG00000004891	TRUB1	74	67.181	Chlorocebus_sabaeus
ENSDARG00000053805	trub1	75	70.297	ENSCHOG00000011931	TRUB1	70	61.728	Choloepus_hoffmanni
ENSDARG00000053805	trub1	92	65.299	ENSCPBG00000003051	TRUB1	93	65.299	Chrysemys_picta_bellii
ENSDARG00000053805	trub1	89	67.181	ENSCANG00000029445	TRUB1	74	67.181	Colobus_angolensis_palliatus
ENSDARG00000053805	trub1	90	57.721	ENSCGRG00001010322	-	78	55.862	Cricetulus_griseus_chok1gshd
ENSDARG00000053805	trub1	81	63.968	ENSCGRG00001016772	-	82	63.855	Cricetulus_griseus_chok1gshd
ENSDARG00000053805	trub1	90	64.103	ENSCGRG00000010806	Trub1	85	63.929	Cricetulus_griseus_crigri
ENSDARG00000053805	trub1	91	69.925	ENSCSEG00000011261	trub1	87	69.231	Cynoglossus_semilaevis
ENSDARG00000053805	trub1	99	82.353	ENSCVAG00000008791	trub1	76	75.000	Cyprinodon_variegatus
ENSDARG00000053805	trub1	92	63.100	ENSDNOG00000001069	TRUB1	77	63.100	Dasypus_novemcinctus
ENSDARG00000053805	trub1	87	66.270	ENSDORG00000010431	Trub1	75	66.023	Dipodomys_ordii
ENSDARG00000053805	trub1	76	69.608	ENSETEG00000009183	TRUB1	58	67.153	Echinops_telfairi
ENSDARG00000053805	trub1	91	65.909	ENSEASG00005014739	TRUB1	75	65.909	Equus_asinus_asinus
ENSDARG00000053805	trub1	91	65.909	ENSECAG00000007177	TRUB1	75	65.909	Equus_caballus
ENSDARG00000053805	trub1	99	70.588	ENSEEUG00000013993	TRUB1	73	58.555	Erinaceus_europaeus
ENSDARG00000053805	trub1	90	76.426	ENSELUG00000000502	trub1	92	76.426	Esox_lucius
ENSDARG00000053805	trub1	90	66.920	ENSFCAG00000031927	TRUB1	75	66.920	Felis_catus
ENSDARG00000053805	trub1	81	66.525	ENSFALG00000002232	TRUB1	91	66.525	Ficedula_albicollis
ENSDARG00000053805	trub1	76	68.627	ENSFDAG00000008140	TRUB1	75	67.213	Fukomys_damarensis
ENSDARG00000053805	trub1	99	79.412	ENSFHEG00000004016	trub1	85	72.984	Fundulus_heteroclitus
ENSDARG00000053805	trub1	90	64.885	ENSGALG00000009091	TRUB1	93	64.885	Gallus_gallus
ENSDARG00000053805	trub1	99	79.412	ENSGAFG00000009193	trub1	86	71.837	Gambusia_affinis
ENSDARG00000053805	trub1	68	74.619	ENSGACG00000015387	trub1	97	74.619	Gasterosteus_aculeatus
ENSDARG00000053805	trub1	93	65.428	ENSGAGG00000009758	TRUB1	75	66.794	Gopherus_agassizii
ENSDARG00000053805	trub1	90	66.920	ENSGGOG00000004583	TRUB1	75	66.920	Gorilla_gorilla
ENSDARG00000053805	trub1	99	82.353	ENSHBUG00000016787	trub1	97	69.853	Haplochromis_burtoni
ENSDARG00000053805	trub1	84	66.939	ENSHGLG00000015314	TRUB1	70	66.939	Heterocephalus_glaber_female
ENSDARG00000053805	trub1	76	67.647	ENSHGLG00100009183	TRUB1	77	66.667	Heterocephalus_glaber_male
ENSDARG00000053805	trub1	99	82.353	ENSHCOG00000017877	trub1	96	74.532	Hippocampus_comes
ENSDARG00000053805	trub1	97	75.265	ENSIPUG00000017559	trub1	95	78.067	Ictalurus_punctatus
ENSDARG00000053805	trub1	93	63.971	ENSSTOG00000003641	TRUB1	81	63.971	Ictidomys_tridecemlineatus
ENSDARG00000053805	trub1	94	64.130	ENSJJAG00000011800	Trub1	77	66.160	Jaculus_jaculus
ENSDARG00000053805	trub1	99	82.353	ENSKMAG00000006232	trub1	92	71.595	Kryptolebias_marmoratus
ENSDARG00000053805	trub1	99	85.294	ENSLBEG00000026722	trub1	91	73.077	Labrus_bergylta
ENSDARG00000053805	trub1	96	63.082	ENSLACG00000014885	TRUB1	94	63.082	Latimeria_chalumnae
ENSDARG00000053805	trub1	93	69.231	ENSLOCG00000012979	trub1	93	69.231	Lepisosteus_oculatus
ENSDARG00000053805	trub1	84	68.571	ENSLAFG00000015452	TRUB1	79	63.538	Loxodonta_africana
ENSDARG00000053805	trub1	89	67.181	ENSMFAG00000031767	TRUB1	74	67.181	Macaca_fascicularis
ENSDARG00000053805	trub1	89	67.181	ENSMMUG00000001902	TRUB1	74	67.181	Macaca_mulatta
ENSDARG00000053805	trub1	89	61.390	ENSMNEG00000044646	TRUB1	73	61.390	Macaca_nemestrina
ENSDARG00000053805	trub1	89	67.181	ENSMLEG00000042655	TRUB1	74	67.181	Mandrillus_leucophaeus
ENSDARG00000053805	trub1	99	82.353	ENSMZEG00005024095	trub1	94	71.374	Maylandia_zebra
ENSDARG00000053805	trub1	96	62.724	ENSMGAG00000011135	TRUB1	96	62.724	Meleagris_gallopavo
ENSDARG00000053805	trub1	87	65.098	ENSMAUG00000011101	Trub1	77	64.885	Mesocricetus_auratus
ENSDARG00000053805	trub1	90	66.160	ENSMICG00000016324	TRUB1	75	66.160	Microcebus_murinus
ENSDARG00000053805	trub1	88	67.315	ENSMOCG00000017759	Trub1	80	67.045	Microtus_ochrogaster
ENSDARG00000053805	trub1	92	65.441	ENSMODG00000009676	TRUB1	79	63.509	Monodelphis_domestica
ENSDARG00000053805	trub1	89	65.385	MGP_CAROLIEiJ_G0023100	Trub1	78	65.152	Mus_caroli
ENSDARG00000053805	trub1	89	64.615	ENSMUSG00000025086	Trub1	78	64.394	Mus_musculus
ENSDARG00000053805	trub1	90	65.019	MGP_PahariEiJ_G0014588	Trub1	78	65.019	Mus_pahari
ENSDARG00000053805	trub1	89	64.615	MGP_SPRETEiJ_G0024021	Trub1	78	64.394	Mus_spretus
ENSDARG00000053805	trub1	93	64.643	ENSMPUG00000003556	TRUB1	80	64.643	Mustela_putorius_furo
ENSDARG00000053805	trub1	98	60.943	ENSMLUG00000017686	TRUB1	86	60.943	Myotis_lucifugus
ENSDARG00000053805	trub1	89	66.795	ENSNGAG00000018682	Trub1	74	66.795	Nannospalax_galili
ENSDARG00000053805	trub1	99	85.294	ENSNBRG00000023393	trub1	91	73.828	Neolamprologus_brichardi
ENSDARG00000053805	trub1	90	66.920	ENSNLEG00000016345	TRUB1	75	66.920	Nomascus_leucogenys
ENSDARG00000053805	trub1	76	69.608	ENSMEUG00000006603	TRUB1	79	66.981	Notamacropus_eugenii
ENSDARG00000053805	trub1	93	63.100	ENSOPRG00000009371	TRUB1	79	63.100	Ochotona_princeps
ENSDARG00000053805	trub1	93	63.971	ENSODEG00000010854	TRUB1	78	63.971	Octodon_degus
ENSDARG00000053805	trub1	99	82.353	ENSONIG00000007249	trub1	90	74.597	Oreochromis_niloticus
ENSDARG00000053805	trub1	85	65.992	ENSOANG00000001556	TRUB1	83	65.882	Ornithorhynchus_anatinus
ENSDARG00000053805	trub1	91	64.773	ENSOCUG00000009456	TRUB1	76	64.773	Oryctolagus_cuniculus
ENSDARG00000053805	trub1	93	69.485	ENSORLG00000029719	trub1	99	67.944	Oryzias_latipes
ENSDARG00000053805	trub1	93	69.485	ENSORLG00020016767	trub1	98	67.944	Oryzias_latipes_hni
ENSDARG00000053805	trub1	88	72.763	ENSORLG00015014728	trub1	97	70.956	Oryzias_latipes_hsok
ENSDARG00000053805	trub1	89	73.106	ENSOMEG00000014556	trub1	93	73.106	Oryzias_melastigma
ENSDARG00000053805	trub1	89	67.181	ENSOGAG00000015895	TRUB1	74	67.181	Otolemur_garnettii
ENSDARG00000053805	trub1	99	68.224	ENSOARG00000015591	TRUB1	77	65.556	Ovis_aries
ENSDARG00000053805	trub1	90	66.920	ENSPPAG00000043645	TRUB1	75	66.920	Pan_paniscus
ENSDARG00000053805	trub1	90	67.300	ENSPPRG00000007096	TRUB1	75	67.300	Panthera_pardus
ENSDARG00000053805	trub1	90	67.300	ENSPTIG00000006378	TRUB1	75	67.300	Panthera_tigris_altaica
ENSDARG00000053805	trub1	90	66.920	ENSPTRG00000002964	TRUB1	75	66.920	Pan_troglodytes
ENSDARG00000053805	trub1	89	67.181	ENSPANG00000020712	TRUB1	74	67.181	Papio_anubis
ENSDARG00000053805	trub1	75	69.231	ENSPKIG00000003852	trub1	84	69.231	Paramormyrops_kingsleyae
ENSDARG00000053805	trub1	94	64.706	ENSPSIG00000012877	TRUB1	94	64.706	Pelodiscus_sinensis
ENSDARG00000053805	trub1	99	82.353	ENSPMGG00000000075	trub1	92	72.941	Periophthalmus_magnuspinnatus
ENSDARG00000053805	trub1	91	64.015	ENSPEMG00000011156	Trub1	78	64.015	Peromyscus_maniculatus_bairdii
ENSDARG00000053805	trub1	92	65.441	ENSPCIG00000009729	TRUB1	77	63.958	Phascolarctos_cinereus
ENSDARG00000053805	trub1	99	82.353	ENSPFOG00000009950	trub1	97	70.149	Poecilia_formosa
ENSDARG00000053805	trub1	92	70.149	ENSPLAG00000013855	trub1	93	70.149	Poecilia_latipinna
ENSDARG00000053805	trub1	99	82.353	ENSPMEG00000009064	trub1	96	70.149	Poecilia_mexicana
ENSDARG00000053805	trub1	99	82.353	ENSPREG00000003343	trub1	96	70.522	Poecilia_reticulata
ENSDARG00000053805	trub1	90	67.300	ENSPPYG00000002676	TRUB1	75	67.300	Pongo_abelii
ENSDARG00000053805	trub1	92	58.955	ENSPCAG00000008427	TRUB1	74	60.618	Procavia_capensis
ENSDARG00000053805	trub1	90	60.456	ENSPCOG00000024360	TRUB1	74	60.456	Propithecus_coquereli
ENSDARG00000053805	trub1	76	70.588	ENSPVAG00000007575	TRUB1	77	69.307	Pteropus_vampyrus
ENSDARG00000053805	trub1	99	82.353	ENSPNYG00000018614	trub1	94	71.103	Pundamilia_nyererei
ENSDARG00000053805	trub1	100	74.806	ENSPNAG00000006881	trub1	96	74.806	Pygocentrus_nattereri
ENSDARG00000053805	trub1	93	63.469	ENSRNOG00000017321	Trub1	79	63.469	Rattus_norvegicus
ENSDARG00000053805	trub1	99	52.809	ENSRBIG00000033423	TRUB1	72	59.004	Rhinopithecus_bieti
ENSDARG00000053805	trub1	89	67.181	ENSRROG00000033902	TRUB1	74	67.181	Rhinopithecus_roxellana
ENSDARG00000053805	trub1	93	63.929	ENSSBOG00000024237	TRUB1	80	63.929	Saimiri_boliviensis_boliviensis
ENSDARG00000053805	trub1	82	65.432	ENSSHAG00000009346	TRUB1	81	65.432	Sarcophilus_harrisii
ENSDARG00000053805	trub1	99	87.500	ENSSFOG00015022124	trub1	99	70.000	Scleropages_formosus
ENSDARG00000053805	trub1	90	74.427	ENSSMAG00000001020	trub1	92	74.427	Scophthalmus_maximus
ENSDARG00000053805	trub1	82	76.151	ENSSDUG00000016414	trub1	90	76.707	Seriola_dumerili
ENSDARG00000053805	trub1	82	76.151	ENSSLDG00000015486	trub1	90	76.707	Seriola_lalandi_dorsalis
ENSDARG00000053805	trub1	91	66.160	ENSSPUG00000001642	TRUB1	91	66.160	Sphenodon_punctatus
ENSDARG00000053805	trub1	99	85.294	ENSSPAG00000001217	trub1	90	75.502	Stegastes_partitus
ENSDARG00000053805	trub1	90	66.160	ENSSSCG00000010653	TRUB1	77	66.160	Sus_scrofa
ENSDARG00000053805	trub1	91	67.925	ENSTGUG00000010971	TRUB1	95	67.925	Taeniopygia_guttata
ENSDARG00000053805	trub1	76	75.714	ENSTBEG00000002880	TRUB1	94	55.230	Tupaia_belangeri
ENSDARG00000053805	trub1	76	69.608	ENSTTRG00000005767	TRUB1	77	68.812	Tursiops_truncatus
ENSDARG00000053805	trub1	93	64.286	ENSUAMG00000024876	TRUB1	80	64.286	Ursus_americanus
ENSDARG00000053805	trub1	93	64.286	ENSUMAG00000002411	TRUB1	86	62.887	Ursus_maritimus
ENSDARG00000053805	trub1	90	66.540	ENSVPAG00000005507	TRUB1	75	66.540	Vicugna_pacos
ENSDARG00000053805	trub1	93	64.286	ENSVVUG00000010085	TRUB1	67	64.286	Vulpes_vulpes
ENSDARG00000053805	trub1	99	76.471	ENSXETG00000023828	trub1	99	65.125	Xenopus_tropicalis
ENSDARG00000053805	trub1	90	69.466	ENSXCOG00000017847	trub1	90	69.466	Xiphophorus_couchianus
ENSDARG00000053805	trub1	99	82.353	ENSXMAG00000014701	trub1	90	73.494	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006400	tRNA modification	21873635.	IBA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process