EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053810 (Gene tree)
Gene ID: 406352
Gene Symbol: hnrnpc
Alias: fb57h12|fi16b11|wu:fb57h12|wu:fi16b11|zgc:55701
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 8931 bases
Position: chr2:38025260-38034190
Accession: ZDB-GENE-040426-2043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000070385	RRM_1	PF00076.22	3.4e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000075905	-	1726	XM_017358046	ENSDARP00000070385	313 (aa)	XP_017213535	Q803J4

Gene Model

Click here to download ENSDARG00000053810's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053810's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000053810	hnrnpc	82	80.233	ENSDARG00000103845	zgc:55733	88	80.252
ENSDARG00000053810	hnrnpc	51	56.790	ENSDARG00000090292	ralyl	76	56.604
ENSDARG00000053810	hnrnpc	81	44.151	ENSDARG00000059972	raly	86	50.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053810	hnrnpc	69	54.545	ENSG00000184672	RALYL	92	74.359	Homo_sapiens
ENSDARG00000053810	hnrnpc	78	82.143	ENSAPOG00000006963	hnrnpc	78	80.165	Acanthochromis_polyacanthus
ENSDARG00000053810	hnrnpc	80	77.907	ENSACIG00000000270	-	84	80.543	Amphilophus_citrinellus
ENSDARG00000053810	hnrnpc	96	74.267	ENSACIG00000016568	-	82	83.028	Amphilophus_citrinellus
ENSDARG00000053810	hnrnpc	95	72.816	ENSAOCG00000021616	-	77	80.567	Amphiprion_ocellaris
ENSDARG00000053810	hnrnpc	78	81.746	ENSAOCG00000003896	-	78	80.165	Amphiprion_ocellaris
ENSDARG00000053810	hnrnpc	78	81.746	ENSAPEG00000001489	-	78	80.165	Amphiprion_percula
ENSDARG00000053810	hnrnpc	80	75.781	ENSAPEG00000019962	-	79	80.972	Amphiprion_percula
ENSDARG00000053810	hnrnpc	84	73.684	ENSATEG00000018006	-	79	83.028	Anabas_testudineus
ENSDARG00000053810	hnrnpc	80	78.210	ENSATEG00000011734	-	78	80.169	Anabas_testudineus
ENSDARG00000053810	hnrnpc	71	50.424	ENSAPLG00000015574	RALYL	80	52.119	Anas_platyrhynchos
ENSDARG00000053810	hnrnpc	71	50.211	ENSACAG00000028464	RALYL	79	51.695	Anolis_carolinensis
ENSDARG00000053810	hnrnpc	69	53.636	ENSANAG00000023383	RALYL	78	54.425	Aotus_nancymaae
ENSDARG00000053810	hnrnpc	82	76.136	ENSACLG00000005707	-	83	81.633	Astatotilapia_calliptera
ENSDARG00000053810	hnrnpc	78	78.968	ENSACLG00000013636	-	80	80.165	Astatotilapia_calliptera
ENSDARG00000053810	hnrnpc	78	79.365	ENSACLG00000000995	-	82	79.821	Astatotilapia_calliptera
ENSDARG00000053810	hnrnpc	88	65.493	ENSAMXG00000042946	hnrnpc	97	80.311	Astyanax_mexicanus
ENSDARG00000053810	hnrnpc	82	75.969	ENSAMXG00000034915	zgc:55733	86	75.918	Astyanax_mexicanus
ENSDARG00000053810	hnrnpc	69	54.091	ENSCJAG00000000402	RALYL	78	54.867	Callithrix_jacchus
ENSDARG00000053810	hnrnpc	86	47.719	ENSCPOG00000012314	RALYL	79	52.941	Cavia_porcellus
ENSDARG00000053810	hnrnpc	69	54.545	ENSCCAG00000025003	RALYL	76	74.359	Cebus_capucinus
ENSDARG00000053810	hnrnpc	69	54.545	ENSCATG00000042145	RALYL	78	55.310	Cercocebus_atys
ENSDARG00000053810	hnrnpc	71	51.489	ENSCLAG00000005228	RALYL	79	52.941	Chinchilla_lanigera
ENSDARG00000053810	hnrnpc	67	51.339	ENSCHOG00000013228	RALYL	75	51.339	Choloepus_hoffmanni
ENSDARG00000053810	hnrnpc	69	54.545	ENSCANG00000039144	RALYL	78	55.310	Colobus_angolensis_palliatus
ENSDARG00000053810	hnrnpc	92	45.395	ENSCGRG00001009241	Ralyl	79	52.119	Cricetulus_griseus_chok1gshd
ENSDARG00000053810	hnrnpc	71	71.556	ENSCSEG00000019769	-	75	72.000	Cynoglossus_semilaevis
ENSDARG00000053810	hnrnpc	82	73.745	ENSCSEG00000021349	-	77	79.098	Cynoglossus_semilaevis
ENSDARG00000053810	hnrnpc	84	61.397	ENSCVAG00000002797	-	79	63.445	Cyprinodon_variegatus
ENSDARG00000053810	hnrnpc	96	75.000	ENSCVAG00000016981	-	76	80.894	Cyprinodon_variegatus
ENSDARG00000053810	hnrnpc	71	51.271	ENSDORG00000003721	Ralyl	81	52.675	Dipodomys_ordii
ENSDARG00000053810	hnrnpc	52	55.233	ENSETEG00000014028	RALYL	85	58.333	Echinops_telfairi
ENSDARG00000053810	hnrnpc	69	44.737	ENSEBUG00000012363	hnrnpc	67	45.833	Eptatretus_burgeri
ENSDARG00000053810	hnrnpc	66	48.372	ENSEBUG00000006049	RALYL	74	48.826	Eptatretus_burgeri
ENSDARG00000053810	hnrnpc	71	51.695	ENSEEUG00000007202	RALYL	80	52.966	Erinaceus_europaeus
ENSDARG00000053810	hnrnpc	79	74.242	ENSELUG00000007714	-	88	74.806	Esox_lucius
ENSDARG00000053810	hnrnpc	82	78.519	ENSELUG00000004132	-	84	80.723	Esox_lucius
ENSDARG00000053810	hnrnpc	67	53.953	ENSFALG00000008647	RALYL	96	55.556	Ficedula_albicollis
ENSDARG00000053810	hnrnpc	80	76.296	ENSFHEG00000007278	-	77	76.892	Fundulus_heteroclitus
ENSDARG00000053810	hnrnpc	86	71.841	ENSFHEG00000003605	-	79	73.663	Fundulus_heteroclitus
ENSDARG00000053810	hnrnpc	71	51.982	ENSGALG00000036938	RALYL	78	52.119	Gallus_gallus
ENSDARG00000053810	hnrnpc	97	71.246	ENSGAFG00000020992	-	78	83.410	Gambusia_affinis
ENSDARG00000053810	hnrnpc	86	73.285	ENSGAFG00000020486	-	81	75.229	Gambusia_affinis
ENSDARG00000053810	hnrnpc	71	70.435	ENSGACG00000018932	-	90	70.130	Gasterosteus_aculeatus
ENSDARG00000053810	hnrnpc	78	80.315	ENSGACG00000017772	-	91	79.412	Gasterosteus_aculeatus
ENSDARG00000053810	hnrnpc	69	54.545	ENSGGOG00000000841	RALYL	78	55.310	Gorilla_gorilla
ENSDARG00000053810	hnrnpc	99	73.125	ENSHBUG00000010527	-	78	80.645	Haplochromis_burtoni
ENSDARG00000053810	hnrnpc	78	79.762	ENSHBUG00000018342	-	78	81.405	Haplochromis_burtoni
ENSDARG00000053810	hnrnpc	71	51.064	ENSHGLG00000004866	RALYL	79	52.521	Heterocephalus_glaber_female
ENSDARG00000053810	hnrnpc	71	51.064	ENSHGLG00100017480	RALYL	79	52.521	Heterocephalus_glaber_male
ENSDARG00000053810	hnrnpc	81	74.725	ENSHCOG00000012333	hnrnpc	84	75.290	Hippocampus_comes
ENSDARG00000053810	hnrnpc	80	84.127	ENSIPUG00000011271	hnrnpc	98	82.667	Ictalurus_punctatus
ENSDARG00000053810	hnrnpc	82	80.233	ENSIPUG00000008666	zgc:55733	99	78.855	Ictalurus_punctatus
ENSDARG00000053810	hnrnpc	71	50.847	ENSSTOG00000012583	RALYL	82	52.263	Ictidomys_tridecemlineatus
ENSDARG00000053810	hnrnpc	85	75.182	ENSKMAG00000011170	-	77	79.167	Kryptolebias_marmoratus
ENSDARG00000053810	hnrnpc	96	71.753	ENSKMAG00000018265	-	77	79.839	Kryptolebias_marmoratus
ENSDARG00000053810	hnrnpc	98	72.381	ENSLBEG00000006193	-	76	80.165	Labrus_bergylta
ENSDARG00000053810	hnrnpc	86	73.551	ENSLBEG00000006979	-	79	78.541	Labrus_bergylta
ENSDARG00000053810	hnrnpc	87	69.896	ENSLBEG00000024418	-	80	71.951	Labrus_bergylta
ENSDARG00000053810	hnrnpc	80	68.199	ENSLOCG00000002560	hnrnpc	82	72.614	Lepisosteus_oculatus
ENSDARG00000053810	hnrnpc	69	54.545	ENSMNEG00000033288	RALYL	78	55.310	Macaca_nemestrina
ENSDARG00000053810	hnrnpc	69	54.545	ENSMLEG00000038284	RALYL	78	55.310	Mandrillus_leucophaeus
ENSDARG00000053810	hnrnpc	78	80.159	ENSMAMG00000012236	-	79	79.435	Mastacembelus_armatus
ENSDARG00000053810	hnrnpc	99	70.807	ENSMAMG00000008033	-	82	80.169	Mastacembelus_armatus
ENSDARG00000053810	hnrnpc	78	79.365	ENSMZEG00005020460	-	78	80.992	Maylandia_zebra
ENSDARG00000053810	hnrnpc	99	73.125	ENSMZEG00005024249	-	78	80.645	Maylandia_zebra
ENSDARG00000053810	hnrnpc	92	45.395	ENSMAUG00000015149	Ralyl	79	52.119	Mesocricetus_auratus
ENSDARG00000053810	hnrnpc	71	53.982	ENSMICG00000005558	RALYL	79	74.359	Microcebus_murinus
ENSDARG00000053810	hnrnpc	71	50.424	ENSMOCG00000017371	Ralyl	79	52.119	Microtus_ochrogaster
ENSDARG00000053810	hnrnpc	89	74.828	ENSMMOG00000019520	-	87	82.743	Mola_mola
ENSDARG00000053810	hnrnpc	80	77.344	ENSMMOG00000021465	-	82	81.356	Mola_mola
ENSDARG00000053810	hnrnpc	80	70.800	ENSMALG00000007520	-	80	73.799	Monopterus_albus
ENSDARG00000053810	hnrnpc	82	76.226	ENSMALG00000014623	-	78	78.862	Monopterus_albus
ENSDARG00000053810	hnrnpc	92	45.066	ENSMUSG00000039717	Ralyl	92	73.077	Mus_musculus
ENSDARG00000053810	hnrnpc	71	52.542	ENSMPUG00000010724	RALYL	79	52.542	Mustela_putorius_furo
ENSDARG00000053810	hnrnpc	71	50.847	ENSNGAG00000013375	Ralyl	81	52.263	Nannospalax_galili
ENSDARG00000053810	hnrnpc	99	72.812	ENSNBRG00000015676	-	79	83.186	Neolamprologus_brichardi
ENSDARG00000053810	hnrnpc	80	78.906	ENSNBRG00000004912	-	95	76.190	Neolamprologus_brichardi
ENSDARG00000053810	hnrnpc	71	53.778	ENSNLEG00000002702	RALYL	74	55.310	Nomascus_leucogenys
ENSDARG00000053810	hnrnpc	57	46.875	ENSOPRG00000013650	-	98	46.875	Ochotona_princeps
ENSDARG00000053810	hnrnpc	71	51.915	ENSODEG00000001012	RALYL	79	53.617	Octodon_degus
ENSDARG00000053810	hnrnpc	78	79.762	ENSONIG00000007859	-	86	76.400	Oreochromis_niloticus
ENSDARG00000053810	hnrnpc	99	73.438	ENSONIG00000018350	-	78	80.645	Oreochromis_niloticus
ENSDARG00000053810	hnrnpc	78	70.472	ENSORLG00000009999	-	78	71.311	Oryzias_latipes
ENSDARG00000053810	hnrnpc	95	71.429	ENSORLG00000003144	-	77	79.921	Oryzias_latipes
ENSDARG00000053810	hnrnpc	78	70.079	ENSORLG00020018228	hnrnpc	78	70.902	Oryzias_latipes_hni
ENSDARG00000053810	hnrnpc	78	70.472	ENSORLG00015019755	-	78	71.311	Oryzias_latipes_hsok
ENSDARG00000053810	hnrnpc	95	71.293	ENSORLG00015009460	-	76	79.921	Oryzias_latipes_hsok
ENSDARG00000053810	hnrnpc	96	72.876	ENSOMEG00000022665	-	77	81.781	Oryzias_melastigma
ENSDARG00000053810	hnrnpc	78	71.654	ENSOMEG00000020488	-	78	72.131	Oryzias_melastigma
ENSDARG00000053810	hnrnpc	69	54.545	ENSPPAG00000038705	RALYL	78	55.310	Pan_paniscus
ENSDARG00000053810	hnrnpc	71	53.947	ENSPPRG00000018612	RALYL	78	54.113	Panthera_pardus
ENSDARG00000053810	hnrnpc	71	53.947	ENSPTIG00000020331	RALYL	78	54.113	Panthera_tigris_altaica
ENSDARG00000053810	hnrnpc	69	54.545	ENSPTRG00000020381	RALYL	78	55.310	Pan_troglodytes
ENSDARG00000053810	hnrnpc	69	54.545	ENSPANG00000029305	RALYL	78	55.310	Papio_anubis
ENSDARG00000053810	hnrnpc	81	75.000	ENSPKIG00000022837	-	76	81.557	Paramormyrops_kingsleyae
ENSDARG00000053810	hnrnpc	82	76.103	ENSPKIG00000008592	-	78	79.839	Paramormyrops_kingsleyae
ENSDARG00000053810	hnrnpc	71	50.000	ENSPSIG00000011135	RALYL	78	51.695	Pelodiscus_sinensis
ENSDARG00000053810	hnrnpc	65	77.184	ENSPMGG00000017774	-	96	63.636	Periophthalmus_magnuspinnatus
ENSDARG00000053810	hnrnpc	69	82.949	ENSPMGG00000013144	-	82	80.184	Periophthalmus_magnuspinnatus
ENSDARG00000053810	hnrnpc	92	45.724	ENSPEMG00000016447	Ralyl	79	52.542	Peromyscus_maniculatus_bairdii
ENSDARG00000053810	hnrnpc	67	54.222	ENSPMAG00000002407	RALYL	97	54.222	Petromyzon_marinus
ENSDARG00000053810	hnrnpc	86	73.188	ENSPFOG00000001583	-	79	74.897	Poecilia_formosa
ENSDARG00000053810	hnrnpc	96	72.816	ENSPFOG00000002643	-	78	80.000	Poecilia_formosa
ENSDARG00000053810	hnrnpc	86	72.101	ENSPLAG00000015305	-	79	73.663	Poecilia_latipinna
ENSDARG00000053810	hnrnpc	96	73.463	ENSPLAG00000000061	-	76	81.301	Poecilia_latipinna
ENSDARG00000053810	hnrnpc	96	72.816	ENSPMEG00000016524	-	76	81.301	Poecilia_mexicana
ENSDARG00000053810	hnrnpc	86	75.090	ENSPMEG00000004802	-	79	74.897	Poecilia_mexicana
ENSDARG00000053810	hnrnpc	78	73.123	ENSPREG00000007928	-	79	73.251	Poecilia_reticulata
ENSDARG00000053810	hnrnpc	78	76.892	ENSPREG00000001852	-	82	80.488	Poecilia_reticulata
ENSDARG00000053810	hnrnpc	71	50.638	ENSPVAG00000010821	RALYL	78	51.915	Pteropus_vampyrus
ENSDARG00000053810	hnrnpc	80	78.516	ENSPNYG00000020293	-	87	76.444	Pundamilia_nyererei
ENSDARG00000053810	hnrnpc	99	68.910	ENSPNYG00000003747	-	83	80.645	Pundamilia_nyererei
ENSDARG00000053810	hnrnpc	82	72.348	ENSPNAG00000019200	zgc:55733	82	74.206	Pygocentrus_nattereri
ENSDARG00000053810	hnrnpc	82	82.375	ENSPNAG00000015686	hnrnpc	89	83.525	Pygocentrus_nattereri
ENSDARG00000053810	hnrnpc	69	54.545	ENSRROG00000023925	RALYL	81	73.750	Rhinopithecus_roxellana
ENSDARG00000053810	hnrnpc	82	75.277	ENSSFOG00015012015	-	93	73.123	Scleropages_formosus
ENSDARG00000053810	hnrnpc	79	78.030	ENSSFOG00015012924	-	81	91.250	Scleropages_formosus
ENSDARG00000053810	hnrnpc	78	77.510	ENSSMAG00000013592	-	77	80.992	Scophthalmus_maximus
ENSDARG00000053810	hnrnpc	99	71.914	ENSSMAG00000011147	-	79	84.404	Scophthalmus_maximus
ENSDARG00000053810	hnrnpc	86	77.455	ENSSDUG00000001723	-	78	80.165	Seriola_dumerili
ENSDARG00000053810	hnrnpc	99	77.287	ENSSDUG00000006730	-	78	82.927	Seriola_dumerili
ENSDARG00000053810	hnrnpc	82	79.623	ENSSLDG00000007474	-	85	82.520	Seriola_lalandi_dorsalis
ENSDARG00000053810	hnrnpc	82	79.545	ENSSLDG00000007454	-	79	80.579	Seriola_lalandi_dorsalis
ENSDARG00000053810	hnrnpc	82	80.303	ENSSPAG00000023204	-	78	81.818	Stegastes_partitus
ENSDARG00000053810	hnrnpc	99	71.875	ENSSPAG00000013996	-	78	80.162	Stegastes_partitus
ENSDARG00000053810	hnrnpc	69	51.515	ENSTGUG00000011689	RALYL	78	53.247	Taeniopygia_guttata
ENSDARG00000053810	hnrnpc	80	74.609	ENSTRUG00000020158	-	87	67.376	Takifugu_rubripes
ENSDARG00000053810	hnrnpc	80	70.498	ENSTNIG00000007427	-	78	73.859	Tetraodon_nigroviridis
ENSDARG00000053810	hnrnpc	79	73.413	ENSTNIG00000000334	-	87	78.298	Tetraodon_nigroviridis
ENSDARG00000053810	hnrnpc	69	46.725	ENSTBEG00000005551	RALYL	89	48.035	Tupaia_belangeri
ENSDARG00000053810	hnrnpc	71	50.216	ENSTTRG00000015762	RALYL	78	50.649	Tursiops_truncatus
ENSDARG00000053810	hnrnpc	69	49.774	ENSVPAG00000008501	RALYL	79	50.870	Vicugna_pacos
ENSDARG00000053810	hnrnpc	86	68.817	ENSXCOG00000006552	-	78	68.699	Xiphophorus_couchianus
ENSDARG00000053810	hnrnpc	86	73.646	ENSXMAG00000009333	-	79	73.663	Xiphophorus_maculatus
ENSDARG00000053810	hnrnpc	78	76.892	ENSXMAG00000022849	-	80	80.488	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component