EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000053963 (Gene tree)
Gene ID: 555786
Gene Symbol: npm2b
Alias: npm2|zgc:163013
Full Name: nucleophosmin/nucleoplasmin%2C 2b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7755 bases
Position: chr10:44552548-44560302
Accession: ZDB-GENE-070410-125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000070563	Nucleoplasmin	PF03066.15	7e-35	1	1
ENSDARP00000156090	Nucleoplasmin	PF03066.15	8.2e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000076084	-	734	XM_021479177	ENSDARP00000070563	182 (aa)	XP_021334852	B2CQD3
ENSDART00000181217	-	2721	-	ENSDARP00000156090	193 (aa)	-	A0A2R8QS89

Gene Model

Click here to download ENSDARG00000053963's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000053963's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000053963	npm2b	58	39.252	ENSDARG00000103594	npm3	64	39.423
ENSDARG00000053963	npm2b	58	40.000	ENSDARG00000014329	npm1a	66	36.792
ENSDARG00000053963	npm2b	55	44.554	ENSDARG00000076391	npm2a	63	44.554

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000053963	npm2b	59	40.541	ENSG00000158806	NPM2	92	36.264	Homo_sapiens
ENSDARG00000053963	npm2b	99	43.169	ENSACAG00000000163	-	97	40.206	Anolis_carolinensis
ENSDARG00000053963	npm2b	57	40.741	ENSANAG00000038138	-	82	40.541	Aotus_nancymaae
ENSDARG00000053963	npm2b	100	82.353	ENSAMXG00000038475	npm2b	98	83.957	Astyanax_mexicanus
ENSDARG00000053963	npm2b	57	43.689	ENSAMXG00000001084	npm2a	68	43.564	Astyanax_mexicanus
ENSDARG00000053963	npm2b	56	44.340	ENSBTAG00000046918	NPM2	55	44.340	Bos_taurus
ENSDARG00000053963	npm2b	55	40.952	ENSCJAG00000020389	NPM2	79	40.741	Callithrix_jacchus
ENSDARG00000053963	npm2b	79	39.103	ENSCAFG00020015227	-	50	41.121	Canis_lupus_dingo
ENSDARG00000053963	npm2b	98	37.037	ENSCAFG00020007666	-	54	40.171	Canis_lupus_dingo
ENSDARG00000053963	npm2b	95	38.764	ENSCAFG00020015194	-	51	42.308	Canis_lupus_dingo
ENSDARG00000053963	npm2b	56	45.283	ENSCHIG00000026056	NPM2	53	45.283	Capra_hircus
ENSDARG00000053963	npm2b	55	42.157	ENSTSYG00000026275	NPM2	77	41.346	Carlito_syrichta
ENSDARG00000053963	npm2b	53	38.542	ENSCAPG00000006057	NPM2	53	37.755	Cavia_aperea
ENSDARG00000053963	npm2b	53	38.542	ENSCPOG00000039799	NPM2	52	38.144	Cavia_porcellus
ENSDARG00000053963	npm2b	55	38.835	ENSCCAG00000035076	NPM2	76	38.835	Cebus_capucinus
ENSDARG00000053963	npm2b	59	40.541	ENSCATG00000031833	NPM2	82	40.541	Cercocebus_atys
ENSDARG00000053963	npm2b	58	38.889	ENSCLAG00000013600	NPM2	52	39.000	Chinchilla_lanigera
ENSDARG00000053963	npm2b	89	38.421	ENSCSAG00000016588	NPM2	96	40.659	Chlorocebus_sabaeus
ENSDARG00000053963	npm2b	59	40.541	ENSCANG00000040109	NPM2	82	40.541	Colobus_angolensis_palliatus
ENSDARG00000053963	npm2b	55	45.631	ENSEASG00005018856	NPM2	54	45.631	Equus_asinus_asinus
ENSDARG00000053963	npm2b	62	42.478	ENSELUG00000017306	-	86	42.478	Esox_lucius
ENSDARG00000053963	npm2b	93	62.295	ENSELUG00000004822	npm2b	100	63.006	Esox_lucius
ENSDARG00000053963	npm2b	77	36.875	ENSFDAG00000007971	NPM2	53	40.594	Fukomys_damarensis
ENSDARG00000053963	npm2b	67	36.885	ENSGALG00000054664	-	75	37.615	Gallus_gallus
ENSDARG00000053963	npm2b	96	44.382	ENSGALG00000050870	NPM2	95	44.920	Gallus_gallus
ENSDARG00000053963	npm2b	59	40.541	ENSGGOG00000007071	NPM2	82	40.541	Gorilla_gorilla
ENSDARG00000053963	npm2b	53	38.000	ENSHGLG00000006243	NPM2	87	37.097	Heterocephalus_glaber_female
ENSDARG00000053963	npm2b	95	87.283	ENSIPUG00000013175	npm2b	100	85.549	Ictalurus_punctatus
ENSDARG00000053963	npm2b	58	44.762	ENSIPUG00000010101	npm2a	71	43.243	Ictalurus_punctatus
ENSDARG00000053963	npm2b	59	39.091	ENSSTOG00000013623	NPM2	51	38.739	Ictidomys_tridecemlineatus
ENSDARG00000053963	npm2b	83	37.888	ENSJJAG00000018214	Npm2	84	41.477	Jaculus_jaculus
ENSDARG00000053963	npm2b	86	48.765	ENSLACG00000016196	NPM2	66	53.913	Latimeria_chalumnae
ENSDARG00000053963	npm2b	99	59.677	ENSLOCG00000014878	npm2b	95	64.706	Lepisosteus_oculatus
ENSDARG00000053963	npm2b	86	37.500	ENSLAFG00000015584	NPM2	52	42.857	Loxodonta_africana
ENSDARG00000053963	npm2b	59	40.541	ENSMFAG00000032098	NPM2	82	40.541	Macaca_fascicularis
ENSDARG00000053963	npm2b	59	40.541	ENSMMUG00000002034	NPM2	82	40.541	Macaca_mulatta
ENSDARG00000053963	npm2b	59	40.541	ENSMNEG00000010994	NPM2	82	40.541	Macaca_nemestrina
ENSDARG00000053963	npm2b	59	40.541	ENSMLEG00000030071	NPM2	82	40.541	Mandrillus_leucophaeus
ENSDARG00000053963	npm2b	59	40.541	ENSMICG00000030722	-	82	40.179	Microcebus_murinus
ENSDARG00000053963	npm2b	56	42.308	ENSMOCG00000017251	Npm2	56	41.905	Microtus_ochrogaster
ENSDARG00000053963	npm2b	56	40.385	ENSMODG00000009677	-	53	40.385	Monodelphis_domestica
ENSDARG00000053963	npm2b	53	45.361	ENSMUSG00000047911	Npm2	57	45.361	Mus_musculus
ENSDARG00000053963	npm2b	81	42.105	MGP_SPRETEiJ_G0020384	Npm2	78	42.593	Mus_spretus
ENSDARG00000053963	npm2b	55	39.806	ENSMLUG00000016075	NPM2	50	39.423	Myotis_lucifugus
ENSDARG00000053963	npm2b	59	39.640	ENSNLEG00000035765	NPM2	82	39.640	Nomascus_leucogenys
ENSDARG00000053963	npm2b	56	39.623	ENSOPRG00000012940	NPM2	50	39.623	Ochotona_princeps
ENSDARG00000053963	npm2b	60	45.133	ENSOANG00000020262	-	52	45.614	Ornithorhynchus_anatinus
ENSDARG00000053963	npm2b	77	40.000	ENSOCUG00000021756	NPM2	52	43.519	Oryctolagus_cuniculus
ENSDARG00000053963	npm2b	60	39.286	ENSOGAG00000011562	NPM2	50	39.252	Otolemur_garnettii
ENSDARG00000053963	npm2b	59	40.541	ENSPPAG00000040749	NPM2	82	40.541	Pan_paniscus
ENSDARG00000053963	npm2b	57	42.056	ENSPPRG00000022157	NPM2	79	42.056	Panthera_pardus
ENSDARG00000053963	npm2b	54	41.584	ENSPTIG00000011553	NPM2	83	41.584	Panthera_tigris_altaica
ENSDARG00000053963	npm2b	59	40.541	ENSPTRG00000020045	NPM2	82	40.541	Pan_troglodytes
ENSDARG00000053963	npm2b	59	40.541	ENSPANG00000031080	NPM2	82	40.541	Papio_anubis
ENSDARG00000053963	npm2b	99	62.234	ENSPKIG00000009700	npm2b	95	62.234	Paramormyrops_kingsleyae
ENSDARG00000053963	npm2b	57	41.748	ENSPKIG00000007241	npm2a	69	41.748	Paramormyrops_kingsleyae
ENSDARG00000053963	npm2b	61	48.214	ENSPSIG00000007722	NPM2	94	44.737	Pelodiscus_sinensis
ENSDARG00000053963	npm2b	65	38.760	ENSPCIG00000012716	-	53	40.708	Phascolarctos_cinereus
ENSDARG00000053963	npm2b	59	41.441	ENSPCOG00000018483	-	82	41.071	Propithecus_coquereli
ENSDARG00000053963	npm2b	55	40.777	ENSPVAG00000009848	NPM2	50	40.777	Pteropus_vampyrus
ENSDARG00000053963	npm2b	55	42.574	ENSPNAG00000018186	npm2a	67	42.574	Pygocentrus_nattereri
ENSDARG00000053963	npm2b	100	89.130	ENSPNAG00000001303	npm2b	98	89.130	Pygocentrus_nattereri
ENSDARG00000053963	npm2b	59	40.541	ENSRBIG00000029235	NPM2	82	40.541	Rhinopithecus_bieti
ENSDARG00000053963	npm2b	59	40.541	ENSRROG00000044119	NPM2	82	40.541	Rhinopithecus_roxellana
ENSDARG00000053963	npm2b	59	40.541	ENSSBOG00000025301	NPM2	82	40.541	Saimiri_boliviensis_boliviensis
ENSDARG00000053963	npm2b	87	60.625	ENSSFOG00015010466	npm2b	91	60.625	Scleropages_formosus
ENSDARG00000053963	npm2b	52	48.958	ENSSPUG00000011509	NPM2	68	48.958	Sphenodon_punctatus
ENSDARG00000053963	npm2b	63	41.525	ENSSSCG00000009610	NPM2	57	44.340	Sus_scrofa
ENSDARG00000053963	npm2b	99	52.356	ENSXETG00000010542	npm2	92	50.270	Xenopus_tropicalis
ENSDARG00000053963	npm2b	60	40.179	ENSXETG00000016499	-	77	41.176	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0007275	multicellular organism development	25009208.	IMP	Process
GO:0042393	histone binding	21873635.	IBA	Function