EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000054096 (Gene tree)
Gene ID: 492764
Gene Symbol: rbm41
Alias: zgc:101754
Full Name: RNA binding motif protein 41
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 34317 bases
Position: chr21:37996822-38031138
Accession: ZDB-GENE-041114-107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000144569	RRM_1	PF00076.22	1.3e-07	1	1
ENSDARP00000070715	RRM_1	PF00076.22	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000076238	-	2291	-	ENSDARP00000070715	439 (aa)	-	F1QN27
ENSDART00000179483	-	2295	-	ENSDARP00000144569	425 (aa)	-	A0A286YBY7

Gene Model

Click here to download ENSDARG00000054096's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000054096's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000054096	rbm41	99	41.568	ENSG00000089682	RBM41	98	41.667	Homo_sapiens
ENSDARG00000054096	rbm41	96	41.523	ENSAMEG00000010490	RBM41	93	41.849	Ailuropoda_melanoleuca
ENSDARG00000054096	rbm41	96	56.909	ENSACIG00000014038	rbm41	96	56.813	Amphilophus_citrinellus
ENSDARG00000054096	rbm41	96	55.610	ENSAOCG00000020927	rbm41	99	55.172	Amphiprion_ocellaris
ENSDARG00000054096	rbm41	96	55.610	ENSAPEG00000001223	rbm41	99	54.713	Amphiprion_percula
ENSDARG00000054096	rbm41	99	53.738	ENSATEG00000022968	rbm41	99	53.846	Anabas_testudineus
ENSDARG00000054096	rbm41	63	50.336	ENSACAG00000014146	RBM41	83	36.548	Anolis_carolinensis
ENSDARG00000054096	rbm41	99	41.913	ENSANAG00000037624	RBM41	97	41.458	Aotus_nancymaae
ENSDARG00000054096	rbm41	96	57.143	ENSACLG00000024125	rbm41	97	57.044	Astatotilapia_calliptera
ENSDARG00000054096	rbm41	97	65.340	ENSAMXG00000007109	rbm41	95	62.796	Astyanax_mexicanus
ENSDARG00000054096	rbm41	99	41.667	ENSBTAG00000000955	RBM41	96	43.256	Bos_taurus
ENSDARG00000054096	rbm41	99	41.667	ENSCJAG00000007957	RBM41	98	41.330	Callithrix_jacchus
ENSDARG00000054096	rbm41	96	42.506	ENSCAFG00000017959	RBM41	92	42.506	Canis_familiaris
ENSDARG00000054096	rbm41	95	42.716	ENSCAFG00020006764	RBM41	93	44.019	Canis_lupus_dingo
ENSDARG00000054096	rbm41	99	41.667	ENSCHIG00000015945	RBM41	96	41.981	Capra_hircus
ENSDARG00000054096	rbm41	99	42.143	ENSTSYG00000006980	RBM41	96	41.905	Carlito_syrichta
ENSDARG00000054096	rbm41	99	41.905	ENSCPOG00000025052	RBM41	96	41.905	Cavia_porcellus
ENSDARG00000054096	rbm41	99	42.381	ENSCCAG00000028014	RBM41	97	42.043	Cebus_capucinus
ENSDARG00000054096	rbm41	99	41.371	ENSCATG00000020042	RBM41	97	40.662	Cercocebus_atys
ENSDARG00000054096	rbm41	99	42.518	ENSCLAG00000002330	RBM41	100	40.830	Chinchilla_lanigera
ENSDARG00000054096	rbm41	99	39.326	ENSCSAG00000009146	RBM41	91	42.694	Chlorocebus_sabaeus
ENSDARG00000054096	rbm41	97	45.411	ENSCPBG00000001728	RBM41	94	44.310	Chrysemys_picta_bellii
ENSDARG00000054096	rbm41	99	41.608	ENSCANG00000028836	RBM41	97	40.898	Colobus_angolensis_palliatus
ENSDARG00000054096	rbm41	99	40.476	ENSCGRG00001012295	Rbm41	99	40.315	Cricetulus_griseus_chok1gshd
ENSDARG00000054096	rbm41	99	39.907	ENSCGRG00000010545	Rbm41	99	40.090	Cricetulus_griseus_crigri
ENSDARG00000054096	rbm41	97	55.583	ENSCSEG00000010491	rbm41	97	55.556	Cynoglossus_semilaevis
ENSDARG00000054096	rbm41	99	42.005	ENSDNOG00000013865	RBM41	95	41.469	Dasypus_novemcinctus
ENSDARG00000054096	rbm41	99	43.468	ENSDORG00000008077	Rbm41	97	42.431	Dipodomys_ordii
ENSDARG00000054096	rbm41	99	41.905	ENSECAG00000021846	RBM41	97	41.492	Equus_caballus
ENSDARG00000054096	rbm41	96	41.707	ENSEEUG00000006722	RBM41	95	41.148	Erinaceus_europaeus
ENSDARG00000054096	rbm41	99	57.763	ENSELUG00000007426	rbm41	93	56.948	Esox_lucius
ENSDARG00000054096	rbm41	97	41.787	ENSFCAG00000001982	RBM41	81	42.105	Felis_catus
ENSDARG00000054096	rbm41	96	44.836	ENSFALG00000011221	RBM41	95	44.695	Ficedula_albicollis
ENSDARG00000054096	rbm41	99	42.857	ENSFDAG00000020264	RBM41	100	42.793	Fukomys_damarensis
ENSDARG00000054096	rbm41	88	56.000	ENSFHEG00000006026	rbm41	91	54.813	Fundulus_heteroclitus
ENSDARG00000054096	rbm41	98	50.239	ENSGMOG00000005876	rbm41	99	69.608	Gadus_morhua
ENSDARG00000054096	rbm41	97	45.301	ENSGALG00000004832	RBM41	99	43.981	Gallus_gallus
ENSDARG00000054096	rbm41	98	55.196	ENSGAFG00000011066	rbm41	92	56.905	Gambusia_affinis
ENSDARG00000054096	rbm41	97	53.041	ENSGACG00000020842	rbm41	95	53.041	Gasterosteus_aculeatus
ENSDARG00000054096	rbm41	97	44.787	ENSGAGG00000015064	RBM41	97	42.857	Gopherus_agassizii
ENSDARG00000054096	rbm41	99	41.568	ENSGGOG00000006587	RBM41	98	41.667	Gorilla_gorilla
ENSDARG00000054096	rbm41	96	56.542	ENSHBUG00000014307	rbm41	97	56.221	Haplochromis_burtoni
ENSDARG00000054096	rbm41	98	41.627	ENSHGLG00000003803	RBM41	92	42.431	Heterocephalus_glaber_female
ENSDARG00000054096	rbm41	99	41.905	ENSHGLG00100007396	RBM41	96	42.254	Heterocephalus_glaber_male
ENSDARG00000054096	rbm41	97	44.337	ENSHCOG00000009614	rbm41	96	44.444	Hippocampus_comes
ENSDARG00000054096	rbm41	98	63.573	ENSIPUG00000007379	rbm41	88	63.232	Ictalurus_punctatus
ENSDARG00000054096	rbm41	99	42.619	ENSSTOG00000001604	RBM41	96	43.379	Ictidomys_tridecemlineatus
ENSDARG00000054096	rbm41	99	42.043	ENSJJAG00000010415	Rbm41	98	41.705	Jaculus_jaculus
ENSDARG00000054096	rbm41	96	58.252	ENSKMAG00000013436	rbm41	99	58.134	Kryptolebias_marmoratus
ENSDARG00000054096	rbm41	97	43.318	ENSLACG00000012336	RBM41	99	42.563	Latimeria_chalumnae
ENSDARG00000054096	rbm41	68	81.818	ENSLOCG00000014958	rbm41	80	81.818	Lepisosteus_oculatus
ENSDARG00000054096	rbm41	98	39.091	ENSLAFG00000028266	RBM41	96	41.705	Loxodonta_africana
ENSDARG00000054096	rbm41	99	41.371	ENSMFAG00000041338	RBM41	97	40.662	Macaca_fascicularis
ENSDARG00000054096	rbm41	98	41.148	ENSMMUG00000023172	RBM41	95	40.431	Macaca_mulatta
ENSDARG00000054096	rbm41	99	41.135	ENSMNEG00000009942	RBM41	97	40.426	Macaca_nemestrina
ENSDARG00000054096	rbm41	97	41.587	ENSMLEG00000030890	RBM41	96	40.865	Mandrillus_leucophaeus
ENSDARG00000054096	rbm41	98	58.257	ENSMAMG00000000581	rbm41	97	58.257	Mastacembelus_armatus
ENSDARG00000054096	rbm41	96	57.176	ENSMZEG00005011676	rbm41	97	57.077	Maylandia_zebra
ENSDARG00000054096	rbm41	72	41.967	ENSMGAG00000009663	RBM41	93	41.639	Meleagris_gallopavo
ENSDARG00000054096	rbm41	99	41.647	ENSMAUG00000016409	Rbm41	96	41.725	Mesocricetus_auratus
ENSDARG00000054096	rbm41	99	42.180	ENSMICG00000009750	RBM41	96	41.943	Microcebus_murinus
ENSDARG00000054096	rbm41	99	40.868	ENSMOCG00000008323	Rbm41	96	41.218	Microtus_ochrogaster
ENSDARG00000054096	rbm41	97	53.253	ENSMMOG00000014574	rbm41	99	52.771	Mola_mola
ENSDARG00000054096	rbm41	99	45.024	ENSMODG00000002312	RBM41	96	45.154	Monodelphis_domestica
ENSDARG00000054096	rbm41	96	57.845	ENSMALG00000010729	rbm41	97	57.968	Monopterus_albus
ENSDARG00000054096	rbm41	98	46.617	MGP_CAROLIEiJ_G0033447	Rbm41	96	42.389	Mus_caroli
ENSDARG00000054096	rbm41	99	42.143	ENSMUSG00000031433	Rbm41	96	42.143	Mus_musculus
ENSDARG00000054096	rbm41	99	41.190	MGP_PahariEiJ_G0031986	Rbm41	96	42.389	Mus_pahari
ENSDARG00000054096	rbm41	99	41.905	MGP_SPRETEiJ_G0034617	Rbm41	96	41.667	Mus_spretus
ENSDARG00000054096	rbm41	95	42.222	ENSMPUG00000003751	RBM41	79	42.336	Mustela_putorius_furo
ENSDARG00000054096	rbm41	98	41.866	ENSMLUG00000005943	RBM41	95	41.330	Myotis_lucifugus
ENSDARG00000054096	rbm41	99	40.724	ENSNGAG00000014004	Rbm41	96	42.759	Nannospalax_galili
ENSDARG00000054096	rbm41	96	58.696	ENSNBRG00000014480	rbm41	96	58.413	Neolamprologus_brichardi
ENSDARG00000054096	rbm41	99	41.093	ENSNLEG00000013861	RBM41	98	41.469	Nomascus_leucogenys
ENSDARG00000054096	rbm41	97	44.860	ENSMEUG00000002663	RBM41	95	44.988	Notamacropus_eugenii
ENSDARG00000054096	rbm41	99	41.514	ENSODEG00000010074	RBM41	97	41.071	Octodon_degus
ENSDARG00000054096	rbm41	97	58.571	ENSONIG00000013260	rbm41	99	58.095	Oreochromis_niloticus
ENSDARG00000054096	rbm41	98	42.056	ENSOCUG00000015937	RBM41	96	42.056	Oryctolagus_cuniculus
ENSDARG00000054096	rbm41	98	56.738	ENSORLG00000015367	rbm41	99	56.028	Oryzias_latipes
ENSDARG00000054096	rbm41	98	52.516	ENSORLG00020008056	rbm41	99	52.516	Oryzias_latipes_hni
ENSDARG00000054096	rbm41	98	58.333	ENSORLG00015014350	rbm41	99	57.041	Oryzias_latipes_hsok
ENSDARG00000054096	rbm41	96	58.795	ENSOMEG00000023816	rbm41	98	58.273	Oryzias_melastigma
ENSDARG00000054096	rbm41	98	41.766	ENSOGAG00000009280	RBM41	97	41.274	Otolemur_garnettii
ENSDARG00000054096	rbm41	98	41.627	ENSOARG00000018817	RBM41	90	41.943	Ovis_aries
ENSDARG00000054096	rbm41	99	41.568	ENSPPAG00000000213	RBM41	96	41.667	Pan_paniscus
ENSDARG00000054096	rbm41	99	40.952	ENSPPRG00000021500	RBM41	96	41.274	Panthera_pardus
ENSDARG00000054096	rbm41	99	41.568	ENSPTRG00000022158	RBM41	98	41.667	Pan_troglodytes
ENSDARG00000054096	rbm41	99	41.371	ENSPANG00000012935	RBM41	97	40.662	Papio_anubis
ENSDARG00000054096	rbm41	98	57.701	ENSPKIG00000008793	rbm41	100	57.471	Paramormyrops_kingsleyae
ENSDARG00000054096	rbm41	99	41.469	ENSPEMG00000015991	Rbm41	96	41.232	Peromyscus_maniculatus_bairdii
ENSDARG00000054096	rbm41	95	45.813	ENSPCIG00000007079	RBM41	95	45.813	Phascolarctos_cinereus
ENSDARG00000054096	rbm41	98	58.432	ENSPFOG00000000848	rbm41	94	57.042	Poecilia_formosa
ENSDARG00000054096	rbm41	88	56.316	ENSPLAG00000022761	rbm41	88	54.805	Poecilia_latipinna
ENSDARG00000054096	rbm41	97	58.413	ENSPMEG00000002394	rbm41	94	58.195	Poecilia_mexicana
ENSDARG00000054096	rbm41	96	57.349	ENSPREG00000013759	rbm41	93	57.143	Poecilia_reticulata
ENSDARG00000054096	rbm41	99	41.568	ENSPPYG00000020609	RBM41	96	41.667	Pongo_abelii
ENSDARG00000054096	rbm41	99	41.469	ENSPCAG00000003991	RBM41	96	41.549	Procavia_capensis
ENSDARG00000054096	rbm41	99	41.429	ENSPCOG00000014296	RBM41	96	41.190	Propithecus_coquereli
ENSDARG00000054096	rbm41	96	57.311	ENSPNYG00000012687	rbm41	97	57.209	Pundamilia_nyererei
ENSDARG00000054096	rbm41	100	63.431	ENSPNAG00000003395	rbm41	98	63.431	Pygocentrus_nattereri
ENSDARG00000054096	rbm41	99	41.469	ENSRNOG00000057622	Rbm41	96	41.274	Rattus_norvegicus
ENSDARG00000054096	rbm41	99	41.371	ENSRBIG00000030599	RBM41	97	40.662	Rhinopithecus_bieti
ENSDARG00000054096	rbm41	99	41.371	ENSRROG00000009201	RBM41	97	40.662	Rhinopithecus_roxellana
ENSDARG00000054096	rbm41	99	42.381	ENSSBOG00000030042	RBM41	97	42.043	Saimiri_boliviensis_boliviensis
ENSDARG00000054096	rbm41	99	44.159	ENSSHAG00000002285	RBM41	96	44.522	Sarcophilus_harrisii
ENSDARG00000054096	rbm41	98	55.631	ENSSFOG00015009956	rbm41	96	57.011	Scleropages_formosus
ENSDARG00000054096	rbm41	97	55.952	ENSSMAG00000014485	rbm41	99	55.765	Scophthalmus_maximus
ENSDARG00000054096	rbm41	99	57.931	ENSSDUG00000008808	rbm41	99	57.798	Seriola_dumerili
ENSDARG00000054096	rbm41	96	58.216	ENSSLDG00000002232	rbm41	99	56.591	Seriola_lalandi_dorsalis
ENSDARG00000054096	rbm41	99	42.280	ENSSARG00000004377	RBM41	99	41.898	Sorex_araneus
ENSDARG00000054096	rbm41	96	45.833	ENSSPUG00000018486	RBM41	95	44.153	Sphenodon_punctatus
ENSDARG00000054096	rbm41	96	58.865	ENSSPAG00000018885	rbm41	97	59.112	Stegastes_partitus
ENSDARG00000054096	rbm41	99	42.453	ENSSSCG00000012556	RBM41	96	42.453	Sus_scrofa
ENSDARG00000054096	rbm41	71	43.464	ENSTGUG00000006473	-	92	43.607	Taeniopygia_guttata
ENSDARG00000054096	rbm41	98	54.502	ENSTRUG00000009805	rbm41	99	53.957	Takifugu_rubripes
ENSDARG00000054096	rbm41	100	52.000	ENSTNIG00000004692	rbm41	99	51.620	Tetraodon_nigroviridis
ENSDARG00000054096	rbm41	96	42.015	ENSUAMG00000021897	RBM41	93	42.790	Ursus_americanus
ENSDARG00000054096	rbm41	99	41.568	ENSVPAG00000003647	RBM41	98	41.705	Vicugna_pacos
ENSDARG00000054096	rbm41	95	42.716	ENSVVUG00000009707	RBM41	79	42.716	Vulpes_vulpes
ENSDARG00000054096	rbm41	96	57.627	ENSXCOG00000018744	rbm41	99	55.909	Xiphophorus_couchianus
ENSDARG00000054096	rbm41	97	58.696	ENSXMAG00000015338	rbm41	99	55.882	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0030626	U12 snRNA binding	21873635.	IBA	Function
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function