EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000054154 (Gene tree)
Gene ID: 553241
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1 ribosome biogenesis factor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 30239 bases
Position: chr12:29240124-29270362
Accession: ZDB-GENE-060720-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000104852	AARP2CN	PF08142.12	2.6e-30	1	1
ENSDARP00000053760	AARP2CN	PF08142.12	3.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000130172	-	1776	-	ENSDARP00000104852	549 (aa)	-	E7EXI9
ENSDART00000053761	-	4620	-	ENSDARP00000053760	1221 (aa)	-	E7F349

Gene Model

Click here to download ENSDARG00000054154's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000054154's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000054154	bms1	99	61.115	ENSG00000165733	BMS1	88	67.195	Homo_sapiens
ENSDARG00000054154	bms1	56	82.085	ENSAPOG00000016107	-	82	82.085	Acanthochromis_polyacanthus
ENSDARG00000054154	bms1	80	77.409	ENSAPOG00000002296	bms1	100	70.364	Acanthochromis_polyacanthus
ENSDARG00000054154	bms1	64	86.441	ENSAPOG00000020157	-	98	85.989	Acanthochromis_polyacanthus
ENSDARG00000054154	bms1	94	67.857	ENSAMEG00000016834	BMS1	88	67.402	Ailuropoda_melanoleuca
ENSDARG00000054154	bms1	97	71.739	ENSACIG00000002588	bms1	100	71.173	Amphilophus_citrinellus
ENSDARG00000054154	bms1	99	73.448	ENSAOCG00000018088	bms1	99	73.198	Amphiprion_ocellaris
ENSDARG00000054154	bms1	99	73.426	ENSAPEG00000014673	bms1	99	73.074	Amphiprion_percula
ENSDARG00000054154	bms1	99	72.771	ENSATEG00000023465	bms1	99	72.632	Anabas_testudineus
ENSDARG00000054154	bms1	92	65.891	ENSANAG00000023432	BMS1	88	66.719	Aotus_nancymaae
ENSDARG00000054154	bms1	99	72.891	ENSACLG00000001294	bms1	99	71.948	Astatotilapia_calliptera
ENSDARG00000054154	bms1	91	76.515	ENSAMXG00000011236	bms1	99	75.059	Astyanax_mexicanus
ENSDARG00000054154	bms1	99	62.229	ENSBTAG00000012878	BMS1	88	67.987	Bos_taurus
ENSDARG00000054154	bms1	84	52.369	WBGene00022021	Y61A9LA.10	95	52.618	Caenorhabditis_elegans
ENSDARG00000054154	bms1	92	65.143	ENSCJAG00000021705	BMS1	88	67.192	Callithrix_jacchus
ENSDARG00000054154	bms1	94	67.391	ENSCAFG00000007114	BMS1	82	72.248	Canis_familiaris
ENSDARG00000054154	bms1	94	67.391	ENSCAFG00020025282	BMS1	82	72.248	Canis_lupus_dingo
ENSDARG00000054154	bms1	99	62.355	ENSCHIG00000023251	BMS1	82	73.165	Capra_hircus
ENSDARG00000054154	bms1	99	58.586	ENSCAPG00000008652	BMS1	82	70.413	Cavia_aperea
ENSDARG00000054154	bms1	99	61.694	ENSCPOG00000000502	BMS1	83	72.018	Cavia_porcellus
ENSDARG00000054154	bms1	99	61.253	ENSCHOG00000011055	BMS1	88	66.797	Choloepus_hoffmanni
ENSDARG00000054154	bms1	99	61.843	ENSCPBG00000025581	BMS1	86	67.512	Chrysemys_picta_bellii
ENSDARG00000054154	bms1	83	61.139	ENSCING00000003181	-	96	61.139	Ciona_intestinalis
ENSDARG00000054154	bms1	82	48.871	ENSCSAVG00000004113	-	86	56.032	Ciona_savignyi
ENSDARG00000054154	bms1	92	66.538	ENSCANG00000011609	BMS1	88	67.670	Colobus_angolensis_palliatus
ENSDARG00000054154	bms1	98	61.797	ENSCGRG00001019461	Bms1	89	66.297	Cricetulus_griseus_chok1gshd
ENSDARG00000054154	bms1	98	61.797	ENSCGRG00000009016	Bms1	88	66.297	Cricetulus_griseus_crigri
ENSDARG00000054154	bms1	99	69.769	ENSCSEG00000002469	bms1	99	69.683	Cynoglossus_semilaevis
ENSDARG00000054154	bms1	93	77.496	ENSCVAG00000008371	bms1	99	73.105	Cyprinodon_variegatus
ENSDARG00000054154	bms1	94	67.183	ENSDNOG00000015761	BMS1	88	67.353	Dasypus_novemcinctus
ENSDARG00000054154	bms1	99	62.393	ENSDORG00000002982	Bms1	88	68.713	Dipodomys_ordii
ENSDARG00000054154	bms1	93	54.025	FBgn0036686	CG7728	94	56.542	Drosophila_melanogaster
ENSDARG00000054154	bms1	92	64.453	ENSETEG00000009554	BMS1	79	64.286	Echinops_telfairi
ENSDARG00000054154	bms1	99	61.783	ENSEASG00005006894	BMS1	88	66.341	Equus_asinus_asinus
ENSDARG00000054154	bms1	99	61.801	ENSECAG00000001358	BMS1	88	67.302	Equus_caballus
ENSDARG00000054154	bms1	99	72.240	ENSELUG00000001756	bms1	99	71.014	Esox_lucius
ENSDARG00000054154	bms1	99	61.806	ENSFCAG00000011220	BMS1	88	67.195	Felis_catus
ENSDARG00000054154	bms1	99	60.922	ENSFALG00000006882	BMS1	81	73.516	Ficedula_albicollis
ENSDARG00000054154	bms1	98	63.603	ENSFDAG00000001422	BMS1	88	66.825	Fukomys_damarensis
ENSDARG00000054154	bms1	98	72.255	ENSFHEG00000003367	bms1	99	72.163	Fundulus_heteroclitus
ENSDARG00000054154	bms1	99	66.996	ENSGMOG00000000718	bms1	55	71.275	Gadus_morhua
ENSDARG00000054154	bms1	79	74.483	ENSGALG00000002624	BMS1	82	74.371	Gallus_gallus
ENSDARG00000054154	bms1	77	81.991	ENSGAFG00000009067	bms1	96	63.662	Gambusia_affinis
ENSDARG00000054154	bms1	93	75.000	ENSGACG00000015334	bms1	88	74.051	Gasterosteus_aculeatus
ENSDARG00000054154	bms1	99	64.035	ENSGAGG00000003467	BMS1	50	67.250	Gopherus_agassizii
ENSDARG00000054154	bms1	99	72.114	ENSHBUG00000022628	bms1	99	72.146	Haplochromis_burtoni
ENSDARG00000054154	bms1	99	72.104	ENSHCOG00000017604	bms1	99	71.102	Hippocampus_comes
ENSDARG00000054154	bms1	99	76.457	ENSIPUG00000017855	bms1	100	75.810	Ictalurus_punctatus
ENSDARG00000054154	bms1	99	61.128	ENSSTOG00000015063	BMS1	88	67.451	Ictidomys_tridecemlineatus
ENSDARG00000054154	bms1	96	72.523	ENSKMAG00000021982	bms1	90	74.219	Kryptolebias_marmoratus
ENSDARG00000054154	bms1	90	72.016	ENSLBEG00000028208	bms1	99	69.611	Labrus_bergylta
ENSDARG00000054154	bms1	98	74.108	ENSLOCG00000012914	bms1	99	74.330	Lepisosteus_oculatus
ENSDARG00000054154	bms1	96	65.455	ENSLAFG00000006250	BMS1	88	66.667	Loxodonta_africana
ENSDARG00000054154	bms1	92	67.315	ENSMFAG00000037771	BMS1	95	66.994	Macaca_fascicularis
ENSDARG00000054154	bms1	82	64.471	ENSMMUG00000007426	-	83	63.564	Macaca_mulatta
ENSDARG00000054154	bms1	90	53.267	ENSMLEG00000029084	-	77	57.035	Mandrillus_leucophaeus
ENSDARG00000054154	bms1	99	71.337	ENSMAMG00000020855	bms1	99	69.760	Mastacembelus_armatus
ENSDARG00000054154	bms1	99	72.809	ENSMZEG00005005663	bms1	99	71.867	Maylandia_zebra
ENSDARG00000054154	bms1	98	61.635	ENSMAUG00000002195	Bms1	89	66.456	Mesocricetus_auratus
ENSDARG00000054154	bms1	94	66.407	ENSMICG00000009977	BMS1	88	66.825	Microcebus_murinus
ENSDARG00000054154	bms1	96	63.235	ENSMOCG00000002038	Bms1	88	66.719	Microtus_ochrogaster
ENSDARG00000054154	bms1	99	70.423	ENSMMOG00000000977	bms1	99	70.407	Mola_mola
ENSDARG00000054154	bms1	99	60.290	ENSMODG00000001177	BMS1	81	73.455	Monodelphis_domestica
ENSDARG00000054154	bms1	99	71.822	ENSMALG00000009680	bms1	99	70.445	Monopterus_albus
ENSDARG00000054154	bms1	81	79.487	MGP_CAROLIEiJ_G0028785	-	77	79.487	Mus_caroli
ENSDARG00000054154	bms1	98	61.376	ENSMUSG00000030138	Bms1	88	65.873	Mus_musculus
ENSDARG00000054154	bms1	98	61.159	MGP_PahariEiJ_G0022539	Bms1	88	66.561	Mus_pahari
ENSDARG00000054154	bms1	92	65.896	ENSMPUG00000017276	BMS1	88	67.717	Mustela_putorius_furo
ENSDARG00000054154	bms1	99	56.619	ENSNGAG00000015258	Bms1	86	66.878	Nannospalax_galili
ENSDARG00000054154	bms1	78	82.135	ENSNBRG00000023627	bms1	97	82.448	Neolamprologus_brichardi
ENSDARG00000054154	bms1	85	73.571	ENSOPRG00000005195	BMS1	80	73.571	Ochotona_princeps
ENSDARG00000054154	bms1	99	72.016	ENSONIG00000007227	bms1	99	71.716	Oreochromis_niloticus
ENSDARG00000054154	bms1	99	61.580	ENSOANG00000000662	-	82	74.771	Ornithorhynchus_anatinus
ENSDARG00000054154	bms1	94	68.562	ENSOCUG00000005354	BMS1	88	67.619	Oryctolagus_cuniculus
ENSDARG00000054154	bms1	93	76.825	ENSORLG00000014655	bms1	100	72.808	Oryzias_latipes
ENSDARG00000054154	bms1	97	75.246	ENSORLG00020016246	bms1	100	71.099	Oryzias_latipes_hni
ENSDARG00000054154	bms1	90	75.889	ENSORLG00015014183	bms1	100	71.692	Oryzias_latipes_hsok
ENSDARG00000054154	bms1	99	72.638	ENSOMEG00000015042	bms1	100	73.453	Oryzias_melastigma
ENSDARG00000054154	bms1	94	67.236	ENSOGAG00000006511	BMS1	88	67.670	Otolemur_garnettii
ENSDARG00000054154	bms1	99	62.250	ENSOARG00000003900	BMS1	82	72.500	Ovis_aries
ENSDARG00000054154	bms1	92	66.602	ENSPPAG00000027837	BMS1	87	66.732	Pan_paniscus
ENSDARG00000054154	bms1	99	61.912	ENSPPRG00000001311	BMS1	88	67.036	Panthera_pardus
ENSDARG00000054154	bms1	99	61.313	ENSPTIG00000009652	BMS1	88	68.249	Panthera_tigris_altaica
ENSDARG00000054154	bms1	99	61.270	ENSPTRG00000002441	BMS1	88	67.512	Pan_troglodytes
ENSDARG00000054154	bms1	96	75.079	ENSPKIG00000008165	bms1	87	74.335	Paramormyrops_kingsleyae
ENSDARG00000054154	bms1	99	62.452	ENSPSIG00000006481	BMS1	83	73.804	Pelodiscus_sinensis
ENSDARG00000054154	bms1	73	84.864	ENSPMGG00000012075	bms1	99	84.864	Periophthalmus_magnuspinnatus
ENSDARG00000054154	bms1	93	66.981	ENSPCIG00000001339	BMS1	81	73.455	Phascolarctos_cinereus
ENSDARG00000054154	bms1	88	75.301	ENSPFOG00000015180	bms1	99	69.391	Poecilia_formosa
ENSDARG00000054154	bms1	88	75.502	ENSPLAG00000007150	bms1	86	75.246	Poecilia_latipinna
ENSDARG00000054154	bms1	99	71.323	ENSPMEG00000023176	bms1	50	74.295	Poecilia_mexicana
ENSDARG00000054154	bms1	88	74.798	ENSPREG00000002695	bms1	99	71.160	Poecilia_reticulata
ENSDARG00000054154	bms1	92	66.082	ENSPPYG00000002836	-	82	66.798	Pongo_abelii
ENSDARG00000054154	bms1	92	64.808	ENSPCAG00000014528	BMS1	70	71.789	Procavia_capensis
ENSDARG00000054154	bms1	89	66.094	ENSPCOG00000023834	-	86	67.849	Propithecus_coquereli
ENSDARG00000054154	bms1	99	72.172	ENSPNYG00000018866	bms1	99	71.913	Pundamilia_nyererei
ENSDARG00000054154	bms1	99	76.220	ENSPNAG00000000676	bms1	99	76.675	Pygocentrus_nattereri
ENSDARG00000054154	bms1	92	66.085	ENSRNOG00000006576	Bms1	87	66.585	Rattus_norvegicus
ENSDARG00000054154	bms1	70	50.914	YPL217C	-	79	47.368	Saccharomyces_cerevisiae
ENSDARG00000054154	bms1	99	58.939	ENSSHAG00000005062	BMS1	60	55.875	Sarcophilus_harrisii
ENSDARG00000054154	bms1	99	72.340	ENSSFOG00015022313	bms1	50	76.698	Scleropages_formosus
ENSDARG00000054154	bms1	99	69.792	ENSSMAG00000019966	bms1	59	69.829	Scophthalmus_maximus
ENSDARG00000054154	bms1	91	74.717	ENSSDUG00000016875	bms1	99	73.098	Seriola_dumerili
ENSDARG00000054154	bms1	99	71.815	ENSSLDG00000015199	bms1	99	71.553	Seriola_lalandi_dorsalis
ENSDARG00000054154	bms1	62	65.764	ENSSARG00000014407	BMS1	68	71.287	Sorex_araneus
ENSDARG00000054154	bms1	95	65.018	ENSSPUG00000014454	BMS1	82	73.103	Sphenodon_punctatus
ENSDARG00000054154	bms1	99	62.897	ENSSSCG00000010198	BMS1	88	67.987	Sus_scrofa
ENSDARG00000054154	bms1	91	65.085	ENSTGUG00000006302	-	82	73.804	Taeniopygia_guttata
ENSDARG00000054154	bms1	99	66.558	ENSTRUG00000008028	bms1	99	65.928	Takifugu_rubripes
ENSDARG00000054154	bms1	97	69.797	ENSTNIG00000006216	bms1	89	71.146	Tetraodon_nigroviridis
ENSDARG00000054154	bms1	64	69.737	ENSTBEG00000001673	-	62	67.987	Tupaia_belangeri
ENSDARG00000054154	bms1	99	60.775	ENSTTRG00000007983	BMS1	80	75.000	Tursiops_truncatus
ENSDARG00000054154	bms1	91	66.406	ENSUAMG00000023996	BMS1	88	67.559	Ursus_americanus
ENSDARG00000054154	bms1	91	66.406	ENSUMAG00000016523	BMS1	88	67.244	Ursus_maritimus
ENSDARG00000054154	bms1	65	63.812	ENSVPAG00000007477	BMS1	80	73.378	Vicugna_pacos
ENSDARG00000054154	bms1	94	67.391	ENSVVUG00000021305	BMS1	84	72.248	Vulpes_vulpes
ENSDARG00000054154	bms1	98	62.744	ENSXETG00000008158	bms1	99	62.996	Xenopus_tropicalis
ENSDARG00000054154	bms1	99	69.130	ENSXCOG00000000506	bms1	96	84.069	Xiphophorus_couchianus
ENSDARG00000054154	bms1	88	74.349	ENSXMAG00000014236	bms1	99	70.752	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001889	liver development	23021545.	IMP	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005515	protein binding	27474224.	IPI	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	27474224.	IDA	Component
GO:0006364	rRNA processing	23021545.	IMP	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0031016	pancreas development	23021545.	IMP	Process
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process