EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000054378 (Gene tree)
Gene ID: 553765
Gene Symbol: pcbp3
Alias: zgc:109966
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 86672 bases
Position: chr9:42040557-42127228
Accession: ZDB-GENE-050522-157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116994	KH_1	PF00013.29	3.4e-55	1	3
ENSDARP00000116994	KH_1	PF00013.29	3.4e-55	2	3
ENSDARP00000116994	KH_1	PF00013.29	3.4e-55	3	3
ENSDARP00000048892	KH_1	PF00013.29	3.7e-55	1	3
ENSDARP00000048892	KH_1	PF00013.29	3.7e-55	2	3
ENSDARP00000048892	KH_1	PF00013.29	3.7e-55	3	3
ENSDARP00000115582	KH_1	PF00013.29	3.7e-55	1	3
ENSDARP00000115582	KH_1	PF00013.29	3.7e-55	2	3
ENSDARP00000115582	KH_1	PF00013.29	3.7e-55	3	3
ENSDARP00000146158	KH_1	PF00013.29	3.7e-55	1	3
ENSDARP00000146158	KH_1	PF00013.29	3.7e-55	2	3
ENSDARP00000146158	KH_1	PF00013.29	3.7e-55	3	3
ENSDARP00000016097	KH_1	PF00013.29	1.3e-36	1	2
ENSDARP00000016097	KH_1	PF00013.29	1.3e-36	2	2
ENSDARP00000116994	KH_2	PF07650.17	4.1e-14	1	1
ENSDARP00000048892	KH_2	PF07650.17	4.5e-14	1	1
ENSDARP00000115582	KH_2	PF07650.17	4.5e-14	1	1
ENSDARP00000146158	KH_2	PF07650.17	4.5e-14	1	1
ENSDARP00000016097	KH_2	PF07650.17	5.4e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000185311	-	3104	XM_021478671	ENSDARP00000146158	350 (aa)	XP_021334346	A8WHQ1
ENSDART00000134431	-	1035	XM_005167894	ENSDARP00000116994	344 (aa)	XP_005167951	A8WHQ0
ENSDART00000148317	-	1053	XM_005167892	ENSDARP00000115582	350 (aa)	XP_005167949	A8WHQ1
ENSDART00000144448	-	780	-	ENSDARP00000122845	167 (aa)	-	F1QQV4
ENSDART00000015267	-	977	-	ENSDARP00000016097	241 (aa)	-	Q504B8
ENSDART00000048893	-	1963	XM_021478672	ENSDARP00000048892	350 (aa)	XP_021334347	A8WHQ1
ENSDART00000132930	-	280	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000054378's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000054378's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000054378	pcbp3	72	52.857	ENSDARG00000007034	hnrpkl	58	52.857
ENSDARG00000054378	pcbp3	97	76.347	ENSDARG00000099039	pcbp2	98	76.380
ENSDARG00000054378	pcbp3	97	63.689	ENSDARG00000024276	pcbp4	93	62.651
ENSDARG00000054378	pcbp3	82	81.313	ENSDARG00000057141	zgc:110045	87	81.313
ENSDARG00000054378	pcbp3	65	40.845	ENSDARG00000017673	nova2	86	31.532
ENSDARG00000054378	pcbp3	62	38.235	ENSDARG00000026489	khsrp	57	38.235
ENSDARG00000054378	pcbp3	94	37.097	ENSDARG00000099758	igf2bp2b	83	37.097
ENSDARG00000054378	pcbp3	68	32.653	ENSDARG00000010266	igf2bp3	60	32.653
ENSDARG00000054378	pcbp3	93	36.937	ENSDARG00000003421	igf2bp2a	88	36.937
ENSDARG00000054378	pcbp3	71	53.030	ENSDARG00000018914	hnrnpk	59	53.030
ENSDARG00000054378	pcbp3	65	40.845	ENSDARG00000020178	nova1	95	39.655
ENSDARG00000054378	pcbp3	64	31.387	ENSDARG00000061478	igf2bp1	58	31.387

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000054378	pcbp3	99	87.390	ENSAPOG00000020003	pcbp3	89	87.390	Acanthochromis_polyacanthus
ENSDARG00000054378	pcbp3	100	92.857	ENSAPOG00000016582	-	100	92.857	Acanthochromis_polyacanthus
ENSDARG00000054378	pcbp3	99	88.920	ENSAMEG00000001697	-	99	88.920	Ailuropoda_melanoleuca
ENSDARG00000054378	pcbp3	100	94.857	ENSACIG00000010933	pcbp3	100	94.857	Amphilophus_citrinellus
ENSDARG00000054378	pcbp3	100	91.279	ENSACIG00000002739	-	100	91.279	Amphilophus_citrinellus
ENSDARG00000054378	pcbp3	96	87.975	ENSAOCG00000007806	-	100	87.975	Amphiprion_ocellaris
ENSDARG00000054378	pcbp3	97	91.291	ENSAOCG00000008592	-	98	91.291	Amphiprion_ocellaris
ENSDARG00000054378	pcbp3	100	90.698	ENSAPEG00000005209	-	100	90.698	Amphiprion_percula
ENSDARG00000054378	pcbp3	100	97.159	ENSAPEG00000008011	pcbp3	100	97.159	Amphiprion_percula
ENSDARG00000054378	pcbp3	100	90.407	ENSATEG00000009833	-	100	90.407	Anabas_testudineus
ENSDARG00000054378	pcbp3	97	95.195	ENSATEG00000015787	-	100	95.195	Anabas_testudineus
ENSDARG00000054378	pcbp3	99	87.324	ENSAPLG00000002975	-	99	87.324	Anas_platyrhynchos
ENSDARG00000054378	pcbp3	98	79.292	ENSAPLG00000008951	-	77	86.000	Anas_platyrhynchos
ENSDARG00000054378	pcbp3	99	92.244	ENSACAG00000004607	-	99	92.244	Anolis_carolinensis
ENSDARG00000054378	pcbp3	98	88.131	ENSACAG00000009819	-	98	88.131	Anolis_carolinensis
ENSDARG00000054378	pcbp3	99	89.091	ENSANAG00000030702	-	100	89.324	Aotus_nancymaae
ENSDARG00000054378	pcbp3	100	92.286	ENSACLG00000003801	-	100	92.286	Astatotilapia_calliptera
ENSDARG00000054378	pcbp3	100	96.307	ENSACLG00000011835	pcbp3	100	96.307	Astatotilapia_calliptera
ENSDARG00000054378	pcbp3	97	86.486	ENSAMXG00000013588	-	100	86.486	Astyanax_mexicanus
ENSDARG00000054378	pcbp3	100	99.429	ENSAMXG00000003440	pcbp3	100	99.429	Astyanax_mexicanus
ENSDARG00000054378	pcbp3	95	65.805	ENSAMXG00000001760	zgc:110045	73	65.330	Astyanax_mexicanus
ENSDARG00000054378	pcbp3	97	89.744	ENSCAFG00020019472	-	82	89.744	Canis_lupus_dingo
ENSDARG00000054378	pcbp3	99	91.202	ENSCSAG00000007440	-	90	91.202	Chlorocebus_sabaeus
ENSDARG00000054378	pcbp3	98	88.626	ENSCPBG00000000733	-	86	88.208	Chrysemys_picta_bellii
ENSDARG00000054378	pcbp3	96	91.239	ENSCPBG00000012151	-	99	86.150	Chrysemys_picta_bellii
ENSDARG00000054378	pcbp3	94	93.833	ENSCSEG00000000822	pcbp3	93	93.833	Cynoglossus_semilaevis
ENSDARG00000054378	pcbp3	80	95.876	ENSCSEG00000016984	-	100	74.054	Cynoglossus_semilaevis
ENSDARG00000054378	pcbp3	100	92.571	ENSCVAG00000005262	-	100	92.571	Cyprinodon_variegatus
ENSDARG00000054378	pcbp3	100	96.875	ENSCVAG00000014482	pcbp3	100	96.875	Cyprinodon_variegatus
ENSDARG00000054378	pcbp3	99	78.006	ENSETEG00000015988	-	99	78.006	Echinops_telfairi
ENSDARG00000054378	pcbp3	98	76.176	ENSEBUG00000007485	-	92	74.793	Eptatretus_burgeri
ENSDARG00000054378	pcbp3	96	67.987	ENSEBUG00000016192	pcbp3	99	68.151	Eptatretus_burgeri
ENSDARG00000054378	pcbp3	92	64.444	ENSEBUG00000005495	pcbp3	74	64.444	Eptatretus_burgeri
ENSDARG00000054378	pcbp3	100	97.167	ENSELUG00000003521	pcbp3	100	97.167	Esox_lucius
ENSDARG00000054378	pcbp3	100	92.571	ENSELUG00000001560	-	99	86.072	Esox_lucius
ENSDARG00000054378	pcbp3	99	90.323	ENSFALG00000003949	-	93	96.875	Ficedula_albicollis
ENSDARG00000054378	pcbp3	98	79.564	ENSFALG00000004411	-	77	79.564	Ficedula_albicollis
ENSDARG00000054378	pcbp3	100	90.407	ENSFHEG00000006539	-	100	90.407	Fundulus_heteroclitus
ENSDARG00000054378	pcbp3	98	88.393	ENSFHEG00000016615	pcbp3	96	88.393	Fundulus_heteroclitus
ENSDARG00000054378	pcbp3	96	67.989	ENSGMOG00000008611	-	100	67.989	Gadus_morhua
ENSDARG00000054378	pcbp3	97	76.257	ENSGMOG00000011992	pcbp3	97	76.257	Gadus_morhua
ENSDARG00000054378	pcbp3	99	89.751	ENSGALG00000004394	-	99	89.751	Gallus_gallus
ENSDARG00000054378	pcbp3	98	86.765	ENSGALG00000013155	-	99	84.731	Gallus_gallus
ENSDARG00000054378	pcbp3	100	92.286	ENSGAFG00000010274	-	100	92.286	Gambusia_affinis
ENSDARG00000054378	pcbp3	100	91.570	ENSGAFG00000011430	pcbp3	99	91.570	Gambusia_affinis
ENSDARG00000054378	pcbp3	100	81.593	ENSGACG00000014955	-	100	81.593	Gasterosteus_aculeatus
ENSDARG00000054378	pcbp3	100	86.027	ENSGACG00000002266	-	100	86.027	Gasterosteus_aculeatus
ENSDARG00000054378	pcbp3	90	88.636	ENSGAGG00000006956	-	88	88.636	Gopherus_agassizii
ENSDARG00000054378	pcbp3	92	86.585	ENSGAGG00000000271	-	100	82.759	Gopherus_agassizii
ENSDARG00000054378	pcbp3	100	96.307	ENSHBUG00000010697	pcbp3	100	96.307	Haplochromis_burtoni
ENSDARG00000054378	pcbp3	100	92.286	ENSHBUG00000021782	-	100	92.286	Haplochromis_burtoni
ENSDARG00000054378	pcbp3	100	97.151	ENSHCOG00000017868	pcbp3	100	97.151	Hippocampus_comes
ENSDARG00000054378	pcbp3	100	87.500	ENSHCOG00000006067	-	93	97.970	Hippocampus_comes
ENSDARG00000054378	pcbp3	100	99.128	ENSIPUG00000006238	pcbp3	100	99.128	Ictalurus_punctatus
ENSDARG00000054378	pcbp3	100	91.429	ENSKMAG00000018530	-	100	91.429	Kryptolebias_marmoratus
ENSDARG00000054378	pcbp3	100	97.159	ENSKMAG00000003046	pcbp3	100	97.159	Kryptolebias_marmoratus
ENSDARG00000054378	pcbp3	99	87.683	ENSLBEG00000006201	pcbp3	98	87.683	Labrus_bergylta
ENSDARG00000054378	pcbp3	100	79.651	ENSLBEG00000006542	-	100	81.143	Labrus_bergylta
ENSDARG00000054378	pcbp3	96	90.395	ENSLACG00000010386	pcbp3	69	96.644	Latimeria_chalumnae
ENSDARG00000054378	pcbp3	100	77.976	ENSLACG00000010804	zgc:110045	76	84.722	Latimeria_chalumnae
ENSDARG00000054378	pcbp3	95	87.462	ENSLOCG00000005058	zgc:110045	80	87.768	Lepisosteus_oculatus
ENSDARG00000054378	pcbp3	99	98.534	ENSLOCG00000009369	pcbp3	99	98.534	Lepisosteus_oculatus
ENSDARG00000054378	pcbp3	100	89.244	ENSMAMG00000011620	-	100	89.244	Mastacembelus_armatus
ENSDARG00000054378	pcbp3	97	88.589	ENSMAMG00000022336	pcbp3	93	88.589	Mastacembelus_armatus
ENSDARG00000054378	pcbp3	100	94.571	ENSMZEG00005008993	pcbp3	100	94.571	Maylandia_zebra
ENSDARG00000054378	pcbp3	100	88.571	ENSMZEG00005014882	-	100	88.669	Maylandia_zebra
ENSDARG00000054378	pcbp3	96	82.000	ENSMGAG00000001883	-	97	81.818	Meleagris_gallopavo
ENSDARG00000054378	pcbp3	99	79.515	ENSMGAG00000006794	-	78	79.515	Meleagris_gallopavo
ENSDARG00000054378	pcbp3	97	87.761	ENSMMOG00000000730	pcbp3	88	87.761	Mola_mola
ENSDARG00000054378	pcbp3	100	89.535	ENSMMOG00000005216	-	100	89.535	Mola_mola
ENSDARG00000054378	pcbp3	97	85.455	ENSMODG00000027884	-	93	88.318	Monodelphis_domestica
ENSDARG00000054378	pcbp3	100	94.872	ENSMALG00000000691	pcbp3	100	94.872	Monopterus_albus
ENSDARG00000054378	pcbp3	99	79.778	ENSMPUG00000001779	-	91	79.778	Mustela_putorius_furo
ENSDARG00000054378	pcbp3	100	94.571	ENSNBRG00000016409	-	100	94.571	Neolamprologus_brichardi
ENSDARG00000054378	pcbp3	100	91.011	ENSNBRG00000016714	-	100	91.011	Neolamprologus_brichardi
ENSDARG00000054378	pcbp3	99	88.485	ENSOPRG00000003431	-	99	88.986	Ochotona_princeps
ENSDARG00000054378	pcbp3	97	91.501	ENSONIG00000012122	-	98	91.501	Oreochromis_niloticus
ENSDARG00000054378	pcbp3	100	92.151	ENSONIG00000004611	-	100	92.151	Oreochromis_niloticus
ENSDARG00000054378	pcbp3	99	90.323	ENSOCUG00000002696	-	90	90.323	Oryctolagus_cuniculus
ENSDARG00000054378	pcbp3	97	91.291	ENSORLG00000000059	pcbp3	100	91.291	Oryzias_latipes
ENSDARG00000054378	pcbp3	100	92.151	ENSORLG00000022739	-	100	92.151	Oryzias_latipes
ENSDARG00000054378	pcbp3	99	90.058	ENSORLG00020012671	pcbp3	99	90.058	Oryzias_latipes_hni
ENSDARG00000054378	pcbp3	100	91.860	ENSORLG00020006124	-	100	91.860	Oryzias_latipes_hni
ENSDARG00000054378	pcbp3	99	90.058	ENSORLG00015000429	pcbp3	99	90.058	Oryzias_latipes_hsok
ENSDARG00000054378	pcbp3	99	91.691	ENSORLG00015008051	-	99	91.691	Oryzias_latipes_hsok
ENSDARG00000054378	pcbp3	100	91.570	ENSOMEG00000020162	-	100	91.570	Oryzias_melastigma
ENSDARG00000054378	pcbp3	95	88.179	ENSOMEG00000020811	pcbp3	99	88.179	Oryzias_melastigma
ENSDARG00000054378	pcbp3	99	85.286	ENSOGAG00000008044	-	99	85.286	Otolemur_garnettii
ENSDARG00000054378	pcbp3	100	91.714	ENSPKIG00000019329	pcbp3	100	91.714	Paramormyrops_kingsleyae
ENSDARG00000054378	pcbp3	90	79.630	ENSPKIG00000020913	-	93	79.630	Paramormyrops_kingsleyae
ENSDARG00000054378	pcbp3	99	78.771	ENSPSIG00000014970	-	99	79.330	Pelodiscus_sinensis
ENSDARG00000054378	pcbp3	92	86.585	ENSPSIG00000008350	-	76	80.000	Pelodiscus_sinensis
ENSDARG00000054378	pcbp3	100	97.429	ENSPMGG00000022383	pcbp3	100	97.429	Periophthalmus_magnuspinnatus
ENSDARG00000054378	pcbp3	98	68.915	ENSPMAG00000004551	pcbp3	91	68.915	Petromyzon_marinus
ENSDARG00000054378	pcbp3	78	89.362	ENSPMAG00000004637	-	97	89.362	Petromyzon_marinus
ENSDARG00000054378	pcbp3	99	97.361	ENSPCIG00000028092	-	99	97.361	Phascolarctos_cinereus
ENSDARG00000054378	pcbp3	90	97.333	ENSPLAG00000011449	pcbp3	100	82.000	Poecilia_latipinna
ENSDARG00000054378	pcbp3	99	86.402	ENSPLAG00000004074	-	92	86.402	Poecilia_latipinna
ENSDARG00000054378	pcbp3	100	90.000	ENSPMEG00000006653	-	100	90.000	Poecilia_mexicana
ENSDARG00000054378	pcbp3	100	96.328	ENSPMEG00000021239	pcbp3	100	96.328	Poecilia_mexicana
ENSDARG00000054378	pcbp3	97	86.866	ENSPREG00000015736	pcbp3	99	86.866	Poecilia_reticulata
ENSDARG00000054378	pcbp3	100	89.535	ENSPREG00000020585	-	100	89.535	Poecilia_reticulata
ENSDARG00000054378	pcbp3	100	89.826	ENSPNYG00000013205	-	100	89.826	Pundamilia_nyererei
ENSDARG00000054378	pcbp3	97	88.589	ENSPNYG00000012326	pcbp3	95	88.589	Pundamilia_nyererei
ENSDARG00000054378	pcbp3	100	95.157	ENSPNAG00000008541	-	100	95.157	Pygocentrus_nattereri
ENSDARG00000054378	pcbp3	100	93.023	ENSPNAG00000015104	pcbp3	100	93.023	Pygocentrus_nattereri
ENSDARG00000054378	pcbp3	99	90.909	ENSRNOG00000001245	Pcbp3	99	90.909	Rattus_norvegicus
ENSDARG00000054378	pcbp3	99	81.769	ENSRBIG00000028177	-	99	81.769	Rhinopithecus_bieti
ENSDARG00000054378	pcbp3	99	86.264	ENSSHAG00000007890	-	91	97.396	Sarcophilus_harrisii
ENSDARG00000054378	pcbp3	94	79.692	ENSSFOG00015007118	-	93	79.692	Scleropages_formosus
ENSDARG00000054378	pcbp3	100	96.857	ENSSFOG00015014706	pcbp3	100	96.857	Scleropages_formosus
ENSDARG00000054378	pcbp3	97	96.997	ENSSFOG00015010205	pcbp3	100	96.997	Scleropages_formosus
ENSDARG00000054378	pcbp3	97	88.889	ENSSMAG00000011929	pcbp3	97	88.889	Scophthalmus_maximus
ENSDARG00000054378	pcbp3	100	92.000	ENSSMAG00000003135	-	100	92.000	Scophthalmus_maximus
ENSDARG00000054378	pcbp3	97	94.328	ENSSDUG00000011608	pcbp3	99	94.328	Seriola_dumerili
ENSDARG00000054378	pcbp3	100	91.143	ENSSDUG00000008502	-	100	91.143	Seriola_dumerili
ENSDARG00000054378	pcbp3	97	94.328	ENSSLDG00000008518	pcbp3	99	94.328	Seriola_lalandi_dorsalis
ENSDARG00000054378	pcbp3	100	92.857	ENSSLDG00000020161	-	100	92.857	Seriola_lalandi_dorsalis
ENSDARG00000054378	pcbp3	92	86.851	ENSSPUG00000013214	-	91	86.851	Sphenodon_punctatus
ENSDARG00000054378	pcbp3	96	88.291	ENSSPAG00000004190	-	100	88.291	Stegastes_partitus
ENSDARG00000054378	pcbp3	100	84.857	ENSSPAG00000023341	-	100	84.857	Stegastes_partitus
ENSDARG00000054378	pcbp3	98	84.273	ENSTGUG00000008158	-	99	84.273	Taeniopygia_guttata
ENSDARG00000054378	pcbp3	99	82.825	ENSTGUG00000003316	-	99	82.825	Taeniopygia_guttata
ENSDARG00000054378	pcbp3	96	91.961	ENSTRUG00000006280	-	92	91.961	Takifugu_rubripes
ENSDARG00000054378	pcbp3	100	92.000	ENSTRUG00000013604	pcbp3	100	92.000	Takifugu_rubripes
ENSDARG00000054378	pcbp3	99	89.751	ENSTTRG00000015075	-	99	89.751	Tursiops_truncatus
ENSDARG00000054378	pcbp3	90	84.667	ENSXETG00000010491	pcbp2	77	78.187	Xenopus_tropicalis
ENSDARG00000054378	pcbp3	98	84.314	ENSXETG00000011483	pcbp1	99	84.314	Xenopus_tropicalis
ENSDARG00000054378	pcbp3	100	96.328	ENSXCOG00000020481	pcbp3	100	96.328	Xiphophorus_couchianus
ENSDARG00000054378	pcbp3	100	97.159	ENSXMAG00000008175	pcbp3	100	97.159	Xiphophorus_maculatus
ENSDARG00000054378	pcbp3	100	92.571	ENSXMAG00000028711	-	100	92.571	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process