EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000054597 (Gene tree)
Gene ID: 553665
Gene Symbol: cnot6l
Alias: zgc:111987
Full Name: CCR4-NOT transcription complex%2C subunit 6-like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 37986 bases
Position: chr5:38786481-38824466
Accession: ZDB-GENE-050522-302
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000071278	Exo_endo_phos	PF03372.23	8.9e-18	1	1
ENSDARP00000156384	Exo_endo_phos	PF03372.23	8.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000076807	-	2613	XM_005165315	ENSDARP00000071278	559 (aa)	XP_005165372	A2BHJ4
ENSDART00000182886	-	1681	-	ENSDARP00000156384	559 (aa)	-	A2BHJ4
ENSDART00000147121	-	594	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000054597's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000054597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000054597	cnot6l	98	74.549	ENSDARG00000008255	cnot6a	99	74.549
ENSDARG00000054597	cnot6l	98	74.327	ENSDARG00000101072	cnot6b	99	74.327

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000054597	cnot6l	98	83.424	ENSG00000138767	CNOT6L	100	89.873	Homo_sapiens
ENSDARG00000054597	cnot6l	98	90.217	ENSAPOG00000005894	cnot6l	99	91.123	Acanthochromis_polyacanthus
ENSDARG00000054597	cnot6l	98	83.424	ENSAMEG00000005570	CNOT6L	99	84.335	Ailuropoda_melanoleuca
ENSDARG00000054597	cnot6l	98	90.580	ENSACIG00000002515	cnot6l	99	91.486	Amphilophus_citrinellus
ENSDARG00000054597	cnot6l	98	86.775	ENSAOCG00000006705	cnot6l	99	87.681	Amphiprion_ocellaris
ENSDARG00000054597	cnot6l	98	85.870	ENSAPEG00000020035	cnot6l	99	86.594	Amphiprion_percula
ENSDARG00000054597	cnot6l	98	91.486	ENSATEG00000008774	cnot6l	99	91.848	Anabas_testudineus
ENSDARG00000054597	cnot6l	98	81.949	ENSAPLG00000003448	CNOT6L	99	82.852	Anas_platyrhynchos
ENSDARG00000054597	cnot6l	98	83.725	ENSACAG00000012099	CNOT6L	99	83.725	Anolis_carolinensis
ENSDARG00000054597	cnot6l	98	83.424	ENSANAG00000023917	CNOT6L	99	84.335	Aotus_nancymaae
ENSDARG00000054597	cnot6l	98	89.674	ENSACLG00000000879	cnot6l	99	90.580	Astatotilapia_calliptera
ENSDARG00000054597	cnot6l	99	92.559	ENSAMXG00000008943	cnot6l	98	92.559	Astyanax_mexicanus
ENSDARG00000054597	cnot6l	98	83.424	ENSBTAG00000049571	CNOT6L	99	84.335	Bos_taurus
ENSDARG00000054597	cnot6l	98	83.607	ENSCJAG00000014846	CNOT6L	99	84.517	Callithrix_jacchus
ENSDARG00000054597	cnot6l	98	83.607	ENSCAFG00000008699	CNOT6L	99	84.517	Canis_familiaris
ENSDARG00000054597	cnot6l	98	83.364	ENSCAFG00020011108	CNOT6L	99	84.278	Canis_lupus_dingo
ENSDARG00000054597	cnot6l	98	83.424	ENSCHIG00000006297	CNOT6L	99	84.335	Capra_hircus
ENSDARG00000054597	cnot6l	98	83.424	ENSTSYG00000009068	CNOT6L	99	84.335	Carlito_syrichta
ENSDARG00000054597	cnot6l	84	92.105	ENSCPOG00000010337	CNOT6L	99	92.105	Cavia_porcellus
ENSDARG00000054597	cnot6l	98	83.424	ENSCCAG00000025000	CNOT6L	99	84.335	Cebus_capucinus
ENSDARG00000054597	cnot6l	98	83.424	ENSCATG00000029623	CNOT6L	99	84.335	Cercocebus_atys
ENSDARG00000054597	cnot6l	98	83.971	ENSCLAG00000004598	CNOT6L	99	83.971	Chinchilla_lanigera
ENSDARG00000054597	cnot6l	98	83.424	ENSCSAG00000004580	CNOT6L	99	84.335	Chlorocebus_sabaeus
ENSDARG00000054597	cnot6l	72	76.119	ENSCHOG00000001108	-	68	83.582	Choloepus_hoffmanni
ENSDARG00000054597	cnot6l	98	82.696	ENSCPBG00000019403	CNOT6L	99	83.607	Chrysemys_picta_bellii
ENSDARG00000054597	cnot6l	98	83.424	ENSCANG00000028583	CNOT6L	99	84.335	Colobus_angolensis_palliatus
ENSDARG00000054597	cnot6l	98	82.696	ENSCGRG00001022099	Cnot6l	99	83.607	Cricetulus_griseus_chok1gshd
ENSDARG00000054597	cnot6l	98	81.967	ENSCGRG00000000543	Cnot6l	99	82.878	Cricetulus_griseus_crigri
ENSDARG00000054597	cnot6l	75	87.290	ENSCSEG00000010395	-	98	87.290	Cynoglossus_semilaevis
ENSDARG00000054597	cnot6l	98	87.840	ENSCSEG00000014001	cnot6l	99	87.840	Cynoglossus_semilaevis
ENSDARG00000054597	cnot6l	96	92.365	ENSCVAG00000021683	cnot6l	96	92.365	Cyprinodon_variegatus
ENSDARG00000054597	cnot6l	98	75.407	ENSDNOG00000004229	CNOT6L	98	79.375	Dasypus_novemcinctus
ENSDARG00000054597	cnot6l	98	75.774	ENSDORG00000011458	Cnot6l	99	75.774	Dipodomys_ordii
ENSDARG00000054597	cnot6l	98	70.714	ENSEBUG00000004849	cnot6l	99	70.714	Eptatretus_burgeri
ENSDARG00000054597	cnot6l	86	84.440	ENSEASG00005016429	CNOT6L	91	84.440	Equus_asinus_asinus
ENSDARG00000054597	cnot6l	91	82.812	ENSECAG00000001582	CNOT6L	88	83.789	Equus_caballus
ENSDARG00000054597	cnot6l	99	88.869	ENSELUG00000013353	cnot6l	89	88.869	Esox_lucius
ENSDARG00000054597	cnot6l	98	83.607	ENSFCAG00000008322	CNOT6L	99	84.517	Felis_catus
ENSDARG00000054597	cnot6l	98	83.394	ENSFALG00000008515	CNOT6L	99	84.124	Ficedula_albicollis
ENSDARG00000054597	cnot6l	98	84.153	ENSFDAG00000007719	CNOT6L	94	84.153	Fukomys_damarensis
ENSDARG00000054597	cnot6l	98	82.491	ENSFHEG00000012364	cnot6l	99	82.852	Fundulus_heteroclitus
ENSDARG00000054597	cnot6l	91	66.008	ENSGMOG00000011077	-	99	66.008	Gadus_morhua
ENSDARG00000054597	cnot6l	86	78.125	ENSGMOG00000000730	cnot6l	99	77.917	Gadus_morhua
ENSDARG00000054597	cnot6l	98	82.664	ENSGALG00000010333	CNOT6L	90	83.577	Gallus_gallus
ENSDARG00000054597	cnot6l	96	89.907	ENSGAFG00000006105	cnot6l	99	89.907	Gambusia_affinis
ENSDARG00000054597	cnot6l	87	82.449	ENSGAGG00000008605	CNOT6L	94	82.449	Gopherus_agassizii
ENSDARG00000054597	cnot6l	98	83.424	ENSGGOG00000023412	CNOT6L	97	84.335	Gorilla_gorilla
ENSDARG00000054597	cnot6l	99	88.909	ENSHBUG00000004755	cnot6l	95	91.250	Haplochromis_burtoni
ENSDARG00000054597	cnot6l	98	84.153	ENSHGLG00000006452	CNOT6L	99	84.153	Heterocephalus_glaber_female
ENSDARG00000054597	cnot6l	98	84.153	ENSHGLG00100012384	CNOT6L	97	84.153	Heterocephalus_glaber_male
ENSDARG00000054597	cnot6l	98	78.483	ENSHCOG00000009512	cnot6l	99	78.483	Hippocampus_comes
ENSDARG00000054597	cnot6l	98	92.701	ENSIPUG00000009879	cnot6l	99	92.701	Ictalurus_punctatus
ENSDARG00000054597	cnot6l	98	83.424	ENSSTOG00000015293	CNOT6L	99	84.335	Ictidomys_tridecemlineatus
ENSDARG00000054597	cnot6l	98	82.878	ENSJJAG00000020583	Cnot6l	99	83.789	Jaculus_jaculus
ENSDARG00000054597	cnot6l	98	89.493	ENSKMAG00000004165	cnot6l	99	89.855	Kryptolebias_marmoratus
ENSDARG00000054597	cnot6l	98	88.364	ENSLBEG00000027202	cnot6l	99	88.364	Labrus_bergylta
ENSDARG00000054597	cnot6l	97	83.333	ENSLACG00000004684	CNOT6L	99	83.150	Latimeria_chalumnae
ENSDARG00000054597	cnot6l	98	84.489	ENSLOCG00000007420	cnot6l	92	84.307	Lepisosteus_oculatus
ENSDARG00000054597	cnot6l	98	83.424	ENSLAFG00000011449	CNOT6L	99	82.531	Loxodonta_africana
ENSDARG00000054597	cnot6l	98	83.424	ENSMFAG00000044296	CNOT6L	99	84.335	Macaca_fascicularis
ENSDARG00000054597	cnot6l	98	83.424	ENSMMUG00000045609	CNOT6L	98	84.335	Macaca_mulatta
ENSDARG00000054597	cnot6l	98	83.424	ENSMNEG00000041259	CNOT6L	99	84.335	Macaca_nemestrina
ENSDARG00000054597	cnot6l	98	83.424	ENSMLEG00000029198	CNOT6L	98	84.335	Mandrillus_leucophaeus
ENSDARG00000054597	cnot6l	98	90.597	ENSMAMG00000016954	cnot6l	99	91.501	Mastacembelus_armatus
ENSDARG00000054597	cnot6l	98	89.674	ENSMZEG00005020235	cnot6l	99	90.580	Maylandia_zebra
ENSDARG00000054597	cnot6l	98	82.664	ENSMGAG00000005144	CNOT6L	99	83.577	Meleagris_gallopavo
ENSDARG00000054597	cnot6l	98	83.060	ENSMICG00000017026	CNOT6L	99	83.971	Microcebus_murinus
ENSDARG00000054597	cnot6l	98	82.696	ENSMOCG00000009451	Cnot6l	99	83.607	Microtus_ochrogaster
ENSDARG00000054597	cnot6l	98	90.580	ENSMMOG00000014621	cnot6l	99	90.580	Mola_mola
ENSDARG00000054597	cnot6l	98	82.696	ENSMODG00000011744	CNOT6L	74	83.607	Monodelphis_domestica
ENSDARG00000054597	cnot6l	98	90.054	ENSMALG00000006354	cnot6l	99	90.778	Monopterus_albus
ENSDARG00000054597	cnot6l	98	82.696	MGP_CAROLIEiJ_G0027429	Cnot6l	99	84.404	Mus_caroli
ENSDARG00000054597	cnot6l	98	82.696	ENSMUSG00000034724	Cnot6l	99	84.404	Mus_musculus
ENSDARG00000054597	cnot6l	98	82.696	MGP_PahariEiJ_G0017207	Cnot6l	99	83.607	Mus_pahari
ENSDARG00000054597	cnot6l	98	82.696	MGP_SPRETEiJ_G0028426	Cnot6l	99	83.607	Mus_spretus
ENSDARG00000054597	cnot6l	93	78.776	ENSMPUG00000003895	CNOT6L	99	79.732	Mustela_putorius_furo
ENSDARG00000054597	cnot6l	91	83.236	ENSMLUG00000000936	CNOT6L	99	84.211	Myotis_lucifugus
ENSDARG00000054597	cnot6l	98	82.514	ENSNGAG00000019803	Cnot6l	99	83.424	Nannospalax_galili
ENSDARG00000054597	cnot6l	90	87.033	ENSNBRG00000016345	cnot6l	83	88.605	Neolamprologus_brichardi
ENSDARG00000054597	cnot6l	98	83.424	ENSNLEG00000028820	CNOT6L	99	84.335	Nomascus_leucogenys
ENSDARG00000054597	cnot6l	78	69.773	ENSMEUG00000009767	-	79	71.269	Notamacropus_eugenii
ENSDARG00000054597	cnot6l	98	84.153	ENSODEG00000004161	CNOT6L	98	84.153	Octodon_degus
ENSDARG00000054597	cnot6l	98	89.408	ENSONIG00000013992	cnot6l	96	90.305	Oreochromis_niloticus
ENSDARG00000054597	cnot6l	98	83.424	ENSOANG00000003561	CNOT6L	99	83.818	Ornithorhynchus_anatinus
ENSDARG00000054597	cnot6l	98	83.424	ENSOCUG00000002497	CNOT6L	99	84.335	Oryctolagus_cuniculus
ENSDARG00000054597	cnot6l	98	86.957	ENSORLG00000018874	cnot6l	99	87.319	Oryzias_latipes
ENSDARG00000054597	cnot6l	98	87.862	ENSOMEG00000010026	cnot6l	99	87.862	Oryzias_melastigma
ENSDARG00000054597	cnot6l	98	80.144	ENSOGAG00000012122	CNOT6L	99	81.047	Otolemur_garnettii
ENSDARG00000054597	cnot6l	98	83.424	ENSOARG00000017771	CNOT6L	99	84.335	Ovis_aries
ENSDARG00000054597	cnot6l	98	80.874	ENSPPAG00000030178	-	99	81.785	Pan_paniscus
ENSDARG00000054597	cnot6l	82	92.105	ENSPPAG00000034242	-	98	92.105	Pan_paniscus
ENSDARG00000054597	cnot6l	98	83.607	ENSPPRG00000008857	CNOT6L	99	84.517	Panthera_pardus
ENSDARG00000054597	cnot6l	98	83.607	ENSPTIG00000015698	CNOT6L	99	84.517	Panthera_tigris_altaica
ENSDARG00000054597	cnot6l	98	83.424	ENSPTRG00000016198	CNOT6L	99	84.335	Pan_troglodytes
ENSDARG00000054597	cnot6l	82	92.105	ENSPTRG00000045291	-	99	92.105	Pan_troglodytes
ENSDARG00000054597	cnot6l	98	83.424	ENSPANG00000007831	CNOT6L	99	84.335	Papio_anubis
ENSDARG00000054597	cnot6l	98	88.686	ENSPKIG00000002892	cnot6l	99	88.686	Paramormyrops_kingsleyae
ENSDARG00000054597	cnot6l	98	82.696	ENSPSIG00000016241	CNOT6L	99	83.971	Pelodiscus_sinensis
ENSDARG00000054597	cnot6l	97	84.799	ENSPMGG00000004021	cnot6l	99	84.799	Periophthalmus_magnuspinnatus
ENSDARG00000054597	cnot6l	98	82.696	ENSPEMG00000011554	Cnot6l	99	83.607	Peromyscus_maniculatus_bairdii
ENSDARG00000054597	cnot6l	94	70.686	ENSPMAG00000005706	cnot6l	99	69.627	Petromyzon_marinus
ENSDARG00000054597	cnot6l	98	82.149	ENSPCIG00000027504	-	99	83.060	Phascolarctos_cinereus
ENSDARG00000054597	cnot6l	99	89.483	ENSPFOG00000013163	cnot6l	99	90.217	Poecilia_formosa
ENSDARG00000054597	cnot6l	98	89.855	ENSPLAG00000019862	cnot6l	99	89.855	Poecilia_latipinna
ENSDARG00000054597	cnot6l	98	90.399	ENSPMEG00000015834	cnot6l	99	90.399	Poecilia_mexicana
ENSDARG00000054597	cnot6l	98	90.036	ENSPREG00000003561	cnot6l	99	90.036	Poecilia_reticulata
ENSDARG00000054597	cnot6l	98	83.424	ENSPPYG00000014869	CNOT6L	99	84.335	Pongo_abelii
ENSDARG00000054597	cnot6l	98	54.098	ENSPCAG00000016617	CNOT6L	94	55.009	Procavia_capensis
ENSDARG00000054597	cnot6l	98	83.424	ENSPCOG00000014669	CNOT6L	99	84.335	Propithecus_coquereli
ENSDARG00000054597	cnot6l	81	89.189	ENSPVAG00000002690	CNOT6L	78	89.189	Pteropus_vampyrus
ENSDARG00000054597	cnot6l	90	87.377	ENSPNYG00000006717	cnot6l	93	88.363	Pundamilia_nyererei
ENSDARG00000054597	cnot6l	98	93.431	ENSPNAG00000003537	cnot6l	98	93.431	Pygocentrus_nattereri
ENSDARG00000054597	cnot6l	98	82.696	ENSRNOG00000002075	Cnot6l	99	83.607	Rattus_norvegicus
ENSDARG00000054597	cnot6l	98	83.424	ENSRBIG00000027644	CNOT6L	99	84.335	Rhinopithecus_bieti
ENSDARG00000054597	cnot6l	98	83.607	ENSRROG00000031003	CNOT6L	99	84.517	Rhinopithecus_roxellana
ENSDARG00000054597	cnot6l	98	83.424	ENSSBOG00000028521	CNOT6L	99	84.335	Saimiri_boliviensis_boliviensis
ENSDARG00000054597	cnot6l	98	82.696	ENSSHAG00000006072	CNOT6L	99	83.607	Sarcophilus_harrisii
ENSDARG00000054597	cnot6l	98	88.686	ENSSFOG00015019044	cnot6l	99	88.686	Scleropages_formosus
ENSDARG00000054597	cnot6l	98	88.587	ENSSMAG00000015568	cnot6l	99	88.587	Scophthalmus_maximus
ENSDARG00000054597	cnot6l	98	91.486	ENSSDUG00000018426	cnot6l	99	91.486	Seriola_dumerili
ENSDARG00000054597	cnot6l	98	91.304	ENSSLDG00000000335	cnot6l	99	91.304	Seriola_lalandi_dorsalis
ENSDARG00000054597	cnot6l	98	83.789	ENSSPUG00000002016	CNOT6L	99	83.789	Sphenodon_punctatus
ENSDARG00000054597	cnot6l	98	90.761	ENSSPAG00000022932	cnot6l	99	91.667	Stegastes_partitus
ENSDARG00000054597	cnot6l	98	83.424	ENSSSCG00000008989	CNOT6L	99	84.335	Sus_scrofa
ENSDARG00000054597	cnot6l	98	83.029	ENSTGUG00000001737	-	99	83.942	Taeniopygia_guttata
ENSDARG00000054597	cnot6l	98	88.768	ENSTRUG00000004332	cnot6l	99	88.768	Takifugu_rubripes
ENSDARG00000054597	cnot6l	98	87.500	ENSTNIG00000016717	cnot6l	99	87.500	Tetraodon_nigroviridis
ENSDARG00000054597	cnot6l	86	79.046	ENSTBEG00000016519	CNOT6L	96	79.046	Tupaia_belangeri
ENSDARG00000054597	cnot6l	86	84.025	ENSTTRG00000005606	CNOT6L	99	84.025	Tursiops_truncatus
ENSDARG00000054597	cnot6l	98	83.424	ENSUAMG00000026982	CNOT6L	99	84.335	Ursus_americanus
ENSDARG00000054597	cnot6l	98	83.424	ENSUMAG00000007955	CNOT6L	99	84.335	Ursus_maritimus
ENSDARG00000054597	cnot6l	98	79.964	ENSVPAG00000010892	CNOT6L	99	80.874	Vicugna_pacos
ENSDARG00000054597	cnot6l	98	83.607	ENSVVUG00000024858	CNOT6L	99	87.870	Vulpes_vulpes
ENSDARG00000054597	cnot6l	98	82.878	ENSXETG00000000372	cnot6l	99	82.878	Xenopus_tropicalis
ENSDARG00000054597	cnot6l	98	89.855	ENSXMAG00000002900	cnot6l	99	89.855	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030014	CCR4-NOT complex	-	ISS	Component
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function